Miyakogusa Predicted Gene

Lj1g3v4765020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4765020.1 Non Characterized Hit- tr|D8TJX6|D8TJX6_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,34.55,0.00002,coiled-coil,NULL; rRNA_processing,rRNA processing;
seg,NULL,CUFF.33313.1
         (188 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g108100.1 | rRNA processing protein | HC | chr7:43968091-4...   124   7e-29

>Medtr7g108100.1 | rRNA processing protein | HC |
           chr7:43968091-43964306 | 20130731
          Length = 192

 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/191 (43%), Positives = 105/191 (54%), Gaps = 11/191 (5%)

Query: 1   MTKNTDERSSGGDHHKNQLK-------KKKNVSRLGGSGLSLAAFAKAKSRNNNYNPAII 53
           MTKN DERS   D H+++ K       K++NVSRLGGSGLSL AFA AKS N+ YNP++I
Sbjct: 1   MTKNNDERS---DSHEDKQKRLTMKKNKRRNVSRLGGSGLSLNAFANAKSNNSGYNPSLI 57

Query: 54  KRQKEFHKNAKNVNKFKKMMKRENQPNDPALAQRLIENLNETXXXXXXXXXXXXXXXXSA 113
           K+Q+E + NAK V K+KKM+K++N  +DP+++QR IENLNET                SA
Sbjct: 58  KKQREIYNNAKKVKKYKKMLKQQNHQSDPSVSQRHIENLNET-EEDKDKNGRRRRKKDSA 116

Query: 114 FSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKKTRKGQPVMKYR 173
           FS                                            FKKTRKGQP+MKYR
Sbjct: 117 FSLEELYKKQHEEKERERMEREAVFKEKKEQREKAEARRKSLREKMFKKTRKGQPIMKYR 176

Query: 174 IEHLLETINAA 184
           IEHLLETI  +
Sbjct: 177 IEHLLETIQGS 187