Miyakogusa Predicted Gene

Lj1g3v4764360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4764360.1 tr|B9I9Y2|B9I9Y2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_572763 PE=4
SV=1,24.74,0.0005,seg,NULL; BRCT domain,BRCT domain; BRCT,BRCT domain;
coiled-coil,NULL; no description,NULL; PAX TRAN,CUFF.33192.1
         (859 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g107650.1 | hypothetical protein | HC | chr7:43920463-4391...   499   e-141
Medtr3g113850.1 | gibberellin-regulated family protein | HC | ch...   393   e-109
Medtr2g020440.1 | BRCT domain DNA repair protein | HC | chr2:680...   285   1e-76
Medtr2g020440.2 | BRCT domain DNA repair protein | HC | chr2:680...   225   2e-58
Medtr3g113860.1 | hypothetical protein | HC | chr3:53107320-5310...    96   1e-19
Medtr7g090680.1 | N-acetyltransferase | HC | chr7:35694242-35701...    63   1e-09

>Medtr7g107650.1 | hypothetical protein | HC |
           chr7:43920463-43915680 | 20130731
          Length = 949

 Score =  499 bits (1284), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/423 (60%), Positives = 304/423 (71%), Gaps = 33/423 (7%)

Query: 437 LNHQVLVSPRLSATSSFSSIDSWVYLKRPRGKRKRANVQTNPNAPATLCIDGKESNIYST 496
           LNHQ+  SP++S TSSFS IDSW   K PRGKRKRAN      AP  L ID KE+N+YST
Sbjct: 555 LNHQIEFSPQISVTSSFSKIDSWACPKGPRGKRKRAN------APRVLGIDDKENNVYST 608

Query: 497 RCLEGQDVDKSCNTRSPCNASSIVNGRCVLQGTYVQPGSAGNAITSEENLHDIRPLLQAH 556
           R LEG                     R  ++ + + P SAG+AI  E NLHD+RPLL AH
Sbjct: 609 RSLEG---------------------RNAVRKSRLLPVSAGDAIKFE-NLHDMRPLLLAH 646

Query: 557 VEILSNKSAAKLGLDIPATVASSESIKISNASHTYNKNHXXXXXXXXXXXXXXXXXIRLG 616
           VEILSNKS  +   +I A+V  SE IKISNA+HT N++                  IRLG
Sbjct: 647 VEILSNKSVVQSSSEISASVGPSEGIKISNANHTCNEHRKKACEKNLPKSSLLKELIRLG 706

Query: 617 VPESSPVLVWRDLRHRRDMAHVRVLFSQHLEDSVIKKQKKILARFNIPIASSSMEATHFV 676
           VP+S+  ++ +DLRHRRDM +VRVLFSQHL+D+V+K+Q+KILAR NI  ASSSMEATHF+
Sbjct: 707 VPKSTSEMMSKDLRHRRDMTNVRVLFSQHLDDNVLKQQQKILARLNISTASSSMEATHFI 766

Query: 677 ADKFTRTKNMLEVMALGKIVVTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPASL 736
           ADKFTRTKNMLE MALG +V+TH WLESCGQAN  IDEKNYILRDMKKEKEIGFSMP SL
Sbjct: 767 ADKFTRTKNMLEAMALGNLVLTHSWLESCGQANFLIDEKNYILRDMKKEKEIGFSMPVSL 826

Query: 737 ARARQKPLLKGRRVYITPHIKPDKEMVTNLVTAVHGQVLDESQICGXXXXXXXXXXXXXS 796
           ARARQKPLLKG+RVYITPHIKP+KE+V +LVTAVHGQ++DE+QI               S
Sbjct: 827 ARARQKPLLKGKRVYITPHIKPNKEVVASLVTAVHGQLVDENQIFADKNDNILDDLLILS 886

Query: 797 CEDDYAICCDFLKRGTAVYSSELVLNGIVVQKLEFERHKLFMNQVRRINPSTSNRFGKVY 856
           CE+D+AIC  FLKRG AVYSSELVLNGI++QKLE ERHKLF+N++ R      N FGKVY
Sbjct: 887 CEEDFAICRHFLKRGAAVYSSELVLNGIIIQKLELERHKLFVNKLSRC-----NWFGKVY 941

Query: 857 RRR 859
           R+R
Sbjct: 942 RKR 944



 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/440 (52%), Positives = 295/440 (67%), Gaps = 20/440 (4%)

Query: 1   MDSFEGIHCRKITREKSPNVMIAGGVGPLSLAKKIKARTHNEAKEPFKWVGCDKNDKNAD 60
           +D F+G    KI  EKSP V  +   G +SLAKK+KA+T NE K+PFKW   D+N K A 
Sbjct: 187 VDLFQGFQNGKIAMEKSPQV--SSARGSISLAKKVKAQTQNEDKDPFKWADKDQNLKEAG 244

Query: 61  IFCEKVEASANFRSYRLAYKRRRQKKDDPLQNQGNCSPGNRCDKS---------VQGPRM 111
           IFC+K+EAS NF S+ L YKRR+Q+K   LQNQG CS  N CD++         VQ P M
Sbjct: 245 IFCKKLEASFNFGSHGLTYKRRKQQKGSRLQNQGKCSASNGCDENQGNYSDENLVQEPTM 304

Query: 112 ATENNNSLKELDAELRATRENLNVYSNVPHTEGMYDIGLDTQIAAEAMDALANEPPPAFC 171
           A +NNNSLKEL  E RA R+++++YS+V  TE M DIGLDTQIAAEAM ALAN  P  F 
Sbjct: 305 AIDNNNSLKELYVESRAARDDVDIYSSVAGTEDMSDIGLDTQIAAEAMGALANLSPVGFH 364

Query: 172 FNDADQPENAFGGSLSDLNEDCQKSYSYRQDPALHSVTLKSNKINVSSCRFRKLTSSSSC 231
           F+DA QP+N F  SLSDL +  +++ S++++   HS+ LKSNK NVSSCRF K+TS SS 
Sbjct: 365 FSDAHQPKNMFDASLSDLKQAHKENSSFKENHGSHSIALKSNKRNVSSCRFSKVTSKSSS 424

Query: 232 LDTENQEPNCVTGXXXXXXXXXXXVEGQFGNDTSKPIYSEHVPLEDGCSLGKYVSFQPSA 291
             T NQ+ N V+G           +EGQF N+TS  + SE V  ++ C L + +SFQP++
Sbjct: 425 EQTYNQDSNLVSGKMKKIMGSKSTIEGQFKNNTSSSVCSESVSHKEVCLLEEDISFQPAS 484

Query: 292 REPRNLSNESKWTRIKDQPSHHTAKDNNVKEKGVIRHK-KGNGLVADPVKLGVKTKHPKL 350
           +EP+ + N+S+WTR+  QPSH   K+NNV E+ +IR+K KG  LVADPV   VKTK   L
Sbjct: 485 KEPK-IQNKSRWTRMTHQPSHPIEKNNNV-EEDIIRYKRKGKCLVADPVVSDVKTKRLNL 542

Query: 351 PTNSCGEARKSRLNHQVLVSPRLSATSSFSSMDSWVYPKRPRGKGKRANVQINPNAPATL 410
            T S G ARKS LNHQ+  SP++S TSSFS +DSW  PK PRGK KRA      NAP  L
Sbjct: 543 STTSYGVARKSSLNHQIEFSPQISVTSSFSKIDSWACPKGPRGKRKRA------NAPRVL 596

Query: 411 CIDGKESNIYSTRCLEGQDV 430
            ID KE+N+YSTR LEG++ 
Sbjct: 597 GIDDKENNVYSTRSLEGRNA 616


>Medtr3g113850.1 | gibberellin-regulated family protein | HC |
           chr3:53105270-53103170 | 20130731
          Length = 452

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/402 (54%), Positives = 258/402 (64%), Gaps = 57/402 (14%)

Query: 437 LNHQVLVSPRLSATSSFSSIDSWVYLKRPRGKRKRANVQTNPNAPATLCIDGKESNIYST 496
           LNHQV VSP +S TSSFS +DSW Y K PRGKRK+AN      AP  LCID KE+N+YST
Sbjct: 58  LNHQVEVSPHISVTSSFSKVDSWAYPKGPRGKRKQAN------APRVLCIDDKENNVYST 111

Query: 497 RCLEGQD-VDKSCNTRSPCNASSIVNGRCVLQGTYVQPGSAGNAITSEENLHDIRPLLQA 555
           R  EG++ V KSC                      + P SAG+AI  E  LHD+RPLL  
Sbjct: 112 RSPEGRNAVRKSC----------------------LLPVSAGDAIKFE-TLHDMRPLLLE 148

Query: 556 HVEILSNKSAAKLGLDIPATVASSESIKISNASHTYNKNHXXXXXXXXXXXXXXXXXIRL 615
           HVEILSNKS  +   +I A+VA SE IKISNA+HT NK+                   RL
Sbjct: 149 HVEILSNKSVVQSSSEISASVAPSEGIKISNANHTCNKHRKKACEKNLPKSSLLKELSRL 208

Query: 616 GVPESSPVLVWRDLRHRRDMAHVRVLFSQHLEDSVIKKQKKILARFNIPIASSSMEATHF 675
           GVP+S+  ++ +DLRHRRDM +VRVLFSQ L+ +V+K+Q+KILAR NI  AS+S+EATHF
Sbjct: 209 GVPKSTLEMMNKDLRHRRDMTNVRVLFSQQLDGNVLKQQQKILARLNISTASNSVEATHF 268

Query: 676 VADKFTRTKNMLEVMALGKIVVTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPAS 735
           + DKFT TKNMLE MALG +V+TH WLESCGQAN  IDEKNYILRDMKKEKEIGF+MP S
Sbjct: 269 ITDKFTHTKNMLEAMALGNLVLTHSWLESCGQANFLIDEKNYILRDMKKEKEIGFTMPVS 328

Query: 736 LARARQKPLLKGRRVYITPHIKPDKEMVTNLVTAVHGQVLDESQICGXXXXXXXXXXXXX 795
           LARARQKPLLK                           ++DE QI               
Sbjct: 329 LARARQKPLLK---------------------------LVDEKQIFADKNDNILDDLLVL 361

Query: 796 SCEDDYAICCDFLKRGTAVYSSELVLNGIVVQKLEFERHKLF 837
           SCE+D+AIC  FLKRG AVYSSELVLNGI++QKLE ER+ L 
Sbjct: 362 SCEEDFAICRHFLKRGAAVYSSELVLNGIIIQKLELERYNLI 403



 Score =  131 bits (329), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 86/124 (69%), Gaps = 6/124 (4%)

Query: 306 IKDQPSHHTAKDNNVKEKGVIRHKKGNGLVADPVKLGVKTKHPKLPTNSCGEARKSRLNH 365
           +K QPSH   K+NNV+E  +  ++KG  LVADPV   VKTK   L T+S G ARKS LNH
Sbjct: 1   MKHQPSHPREKNNNVEEDIIRYNRKGKCLVADPVASDVKTKCLNLSTSSYGVARKSSLNH 60

Query: 366 QVLVSPRLSATSSFSSMDSWVYPKRPRGKGKRANVQINPNAPATLCIDGKESNIYSTRCL 425
           QV VSP +S TSSFS +DSW YPK PRGK K+A      NAP  LCID KE+N+YSTR  
Sbjct: 61  QVEVSPHISVTSSFSKVDSWAYPKGPRGKRKQA------NAPRVLCIDDKENNVYSTRSP 114

Query: 426 EGQD 429
           EG++
Sbjct: 115 EGRN 118


>Medtr2g020440.1 | BRCT domain DNA repair protein | HC |
            chr2:6801227-6807047 | 20130731
          Length = 1155

 Score =  285 bits (729), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 132/226 (58%), Positives = 169/226 (74%), Gaps = 2/226 (0%)

Query: 620  SSPVLVW--RDLRHRRDMAHVRVLFSQHLEDSVIKKQKKILARFNIPIASSSMEATHFVA 677
            S P L+   +D R R+DM+ VR+L+S+HL++ +IK QKKILAR  + +ASS  +ATHF+ 
Sbjct: 909  SRPELITPSKDSRKRKDMSDVRILYSRHLDEDIIKHQKKILARLGVSVASSVADATHFIT 968

Query: 678  DKFTRTKNMLEVMALGKIVVTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPASLA 737
            D+F RT+NMLE +A GK VVTHLW+ESCGQANCF+DEKNYILRD KKEKE GFSMP SLA
Sbjct: 969  DQFVRTRNMLEAIAFGKPVVTHLWIESCGQANCFMDEKNYILRDAKKEKEFGFSMPVSLA 1028

Query: 738  RARQKPLLKGRRVYITPHIKPDKEMVTNLVTAVHGQVLDESQICGXXXXXXXXXXXXXSC 797
            RA + PLL+GRRV ITP+ KP KE++++LV+AVHGQ ++                   SC
Sbjct: 1029 RASKHPLLEGRRVLITPNTKPSKEIISSLVSAVHGQAVERVGRSALKDHKIPDDLLILSC 1088

Query: 798  EDDYAICCDFLKRGTAVYSSELVLNGIVVQKLEFERHKLFMNQVRR 843
            E+DYA C  FL++G  VYSSEL+LNGIV QKLE+ERH LF + V++
Sbjct: 1089 EEDYASCVPFLEKGAMVYSSELLLNGIVTQKLEYERHLLFADHVKK 1134


>Medtr2g020440.2 | BRCT domain DNA repair protein | HC |
            chr2:6801229-6807035 | 20130731
          Length = 1072

 Score =  225 bits (573), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 101/156 (64%), Positives = 128/156 (82%), Gaps = 2/156 (1%)

Query: 620  SSPVLVW--RDLRHRRDMAHVRVLFSQHLEDSVIKKQKKILARFNIPIASSSMEATHFVA 677
            S P L+   +D R R+DM+ VR+L+S+HL++ +IK QKKILAR  + +ASS  +ATHF+ 
Sbjct: 909  SRPELITPSKDSRKRKDMSDVRILYSRHLDEDIIKHQKKILARLGVSVASSVADATHFIT 968

Query: 678  DKFTRTKNMLEVMALGKIVVTHLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPASLA 737
            D+F RT+NMLE +A GK VVTHLW+ESCGQANCF+DEKNYILRD KKEKE GFSMP SLA
Sbjct: 969  DQFVRTRNMLEAIAFGKPVVTHLWIESCGQANCFMDEKNYILRDAKKEKEFGFSMPVSLA 1028

Query: 738  RARQKPLLKGRRVYITPHIKPDKEMVTNLVTAVHGQ 773
            RA + PLL+GRRV ITP+ KP KE++++LV+AVHGQ
Sbjct: 1029 RASKHPLLEGRRVLITPNTKPSKEIISSLVSAVHGQ 1064


>Medtr3g113860.1 | hypothetical protein | HC |
           chr3:53107320-53105720 | 20130731
          Length = 308

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/159 (39%), Positives = 80/159 (50%), Gaps = 43/159 (27%)

Query: 1   MDSFEGIHCRKITREKSPNVMIAGGVGPLSLAKKIKARTHNEAKEPFKWVGCDKNDKNAD 60
           +D F+G    KI  EKSP V  +   G +SLAKK KART                     
Sbjct: 175 VDLFQGFQNGKIAMEKSPQV--SSARGSISLAKKFKART--------------------- 211

Query: 61  IFCEKVEASANFRSYRLAYKRRRQKKDDPLQNQGNCSPGNRCDKS--------------V 106
                 + S +F S+ L Y RRRQ+K   LQNQG CS  N CD++              V
Sbjct: 212 ------QTSFSFGSHGLTYNRRRQQKGSRLQNQGKCSASNGCDENQGNYSASNQCDENLV 265

Query: 107 QGPRMATENNNSLKELDAELRATRENLNVYSNVPHTEGM 145
           Q P MAT+NNNSLKEL  E  A R ++++Y++V HTE M
Sbjct: 266 QEPTMATDNNNSLKELYVESCAARGDVDIYTSVAHTEDM 304


>Medtr7g090680.1 | N-acetyltransferase | HC | chr7:35694242-35701319
           | 20130731
          Length = 650

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 7/200 (3%)

Query: 639 RVLFSQHLEDSVIKKQKKILARFNIPIASSSMEATHFVADKFTRTKNMLEVMALGKIVVT 698
           R++     +D+   +  K++      IAS     TH V  +  +T N    +  G  VV+
Sbjct: 449 RIMLMNITDDAKKTQLTKVIEDLGGTIASDGSSTTHVVTGQVRKTLNFCTALCSGAWVVS 508

Query: 699 HLWLESCGQANCFIDEKNYILRDMKKEKEIGFSMPASLARARQKP--LLKGRRVYITPHI 756
             WL+   +   F+DE  +IL D     +    + +++ RA+  P  L KG  + I  ++
Sbjct: 509 SSWLKESFREGRFVDELPHILNDKDYLLKYKSDLRSAVLRAKACPHSLFKGYNICIAANV 568

Query: 757 KPDKEMVTNLVTAVHGQVLDESQICGXXXXXXXXXXXXXSCEDDYAICCDFLKRGTAVYS 816
           +   + ++ +V +  G V     I G             +CE+D        K+G   + 
Sbjct: 569 QTPAKTLSAIVRSAGGNV-----ISGLKKVNEASTTIFVTCEEDIEEAMMAAKKGIRTFD 623

Query: 817 SELVLNGIVVQKLEFERHKL 836
           SE  +N ++ Q+L+ E  + 
Sbjct: 624 SEWFMNCVMRQELDLEASQF 643