Miyakogusa Predicted Gene
- Lj1g3v4764260.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4764260.1 Non Characterized Hit- tr|I1FE49|I1FE49_AMPQE
Uncharacterized protein OS=Amphimedon queenslandica
GN,38.79,0.00000000000001,RNA recognition motif,RNA recognition motif
domain; RRM_1,RNA recognition motif domain; FAMILY NOT N,CUFF.33249.1
(440 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 698 0.0
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 693 0.0
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 535 e-152
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 179 4e-45
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 113 4e-25
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 111 1e-24
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 110 3e-24
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 2e-13
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 69 6e-12
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 68 2e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 2e-10
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 3e-10
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 3e-10
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 64 3e-10
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 5e-10
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-10
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 63 6e-10
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 9e-10
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 62 9e-10
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 62 9e-10
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 61 2e-09
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 61 2e-09
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 61 3e-09
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 61 3e-09
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 60 4e-09
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 60 5e-09
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 6e-09
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 59 8e-09
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr5g017130.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 2e-08
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 58 2e-08
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 58 2e-08
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 2e-08
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 58 2e-08
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 57 3e-08
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 57 3e-08
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 57 3e-08
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 57 3e-08
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 4e-08
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 56 5e-08
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 56 7e-08
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 9e-08
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 56 9e-08
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 55 9e-08
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 55 9e-08
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 1e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 55 1e-07
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 54 2e-07
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 54 4e-07
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 5e-07
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 5e-07
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 53 5e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 53 7e-07
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 1e-06
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 2e-06
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-06
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 49 8e-06
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 49 8e-06
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/419 (82%), Positives = 355/419 (84%), Gaps = 3/419 (0%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVGQVPKHMTEDELLT+FKEFA+VDEVNIIKDKATRASRGCCFVICPSRDEADKAVN
Sbjct: 16 VKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 75
Query: 84 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQI 143
ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN+SEVEVSALFS YGTIKDLQI
Sbjct: 76 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYGTIKDLQI 135
Query: 144 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTXXXXXXXXXXX 203
LRGSQQTSKGCAFLKYETK+QALAALEAINGKHKMEGSSVPLVVKWADT
Sbjct: 136 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK 195
Query: 204 XXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRM-PPMQNQPGFHN 262
NV H DSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRM PPMQNQPG+HN
Sbjct: 196 AQSQASNVGH-DSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPPMQNQPGYHN 254
Query: 263 MMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPAVPGLQHPMAY-HAXXXXXXXXXX 321
MMPHMN GNALRPDLGP+MNPRNYHVPPASYV SYPAVPGLQHPMAY
Sbjct: 255 MMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPGGMISPRPLNSP 314
Query: 322 XXXXXXXXXXXXXXXXXXXXXXXXXXQVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRV 381
Q EGPPGANLFIYHIPQEFGDQ+LANAFQPFGRV
Sbjct: 315 PGSVSPSGGNGNSATSSGSSKNSGGGQAEGPPGANLFIYHIPQEFGDQELANAFQPFGRV 374
Query: 382 ISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY 440
+SAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG QLGGKKLKVQHKRDNKPGKPY
Sbjct: 375 LSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY 433
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/420 (82%), Positives = 355/420 (84%), Gaps = 4/420 (0%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVGQVPKHMTEDELLT+FKEFA+VDEVNIIKDKATRASRGCCFVICPSRDEADKAVN
Sbjct: 16 VKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 75
Query: 84 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQI 143
ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN+SEVEVSALFS YGTIKDLQI
Sbjct: 76 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYGTIKDLQI 135
Query: 144 LRGSQQTSK-GCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTXXXXXXXXXX 202
LRGSQQTSK GCAFLKYETK+QALAALEAINGKHKMEGSSVPLVVKWADT
Sbjct: 136 LRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQ 195
Query: 203 XXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRM-PPMQNQPGFH 261
NV H DSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRM PPMQNQPG+H
Sbjct: 196 KAQSQASNVGH-DSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPPMQNQPGYH 254
Query: 262 NMMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPAVPGLQHPMAY-HAXXXXXXXXX 320
NMMPHMN GNALRPDLGP+MNPRNYHVPPASYV SYPAVPGLQHPMAY
Sbjct: 255 NMMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAYPGGMISPRPLNS 314
Query: 321 XXXXXXXXXXXXXXXXXXXXXXXXXXXQVEGPPGANLFIYHIPQEFGDQDLANAFQPFGR 380
Q EGPPGANLFIYHIPQEFGDQ+LANAFQPFGR
Sbjct: 315 PPGSVSPSGGNGNSATSSGSSKNSGGGQAEGPPGANLFIYHIPQEFGDQELANAFQPFGR 374
Query: 381 VISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQHKRDNKPGKPY 440
V+SAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG QLGGKKLKVQHKRDNKPGKPY
Sbjct: 375 VLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGCQLGGKKLKVQHKRDNKPGKPY 434
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 535 bits (1377), Expect = e-152, Method: Compositional matrix adjust.
Identities = 258/287 (89%), Positives = 264/287 (91%), Gaps = 2/287 (0%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VKLFVGQVPKHMTEDELLT+FKEFA+VDEVNIIKDKATRASRGCCFVICPSRDEADKAVN
Sbjct: 16 VKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 75
Query: 84 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQI 143
ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKN+SEVEVSALFS YGTIKDLQI
Sbjct: 76 ACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSALFSKYGTIKDLQI 135
Query: 144 LRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADTXXXXXXXXXXX 203
LRGSQQTSKGCAFLKYETK+QALAALEAINGKHKMEGSSVPLVVKWADT
Sbjct: 136 LRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQK 195
Query: 204 XXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRM-PPMQNQPGFHN 262
NV H DSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRM PPMQNQPG+HN
Sbjct: 196 AQSQASNVGH-DSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPYRMPPPMQNQPGYHN 254
Query: 263 MMPHMNHGNALRPDLGPSMNPRNYHVPPASYVSSYPAVPGLQHPMAY 309
MMPHMN GNALRPDLGP+MNPRNYHVPPASYV SYPAVPGLQHPMAY
Sbjct: 255 MMPHMNQGNALRPDLGPNMNPRNYHVPPASYVGSYPAVPGLQHPMAY 301
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 117/171 (68%), Gaps = 3/171 (1%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
KLFVG VP+ TE+++ +F+E V EV +IKD+ T +GCCF+ + +EAD+A+
Sbjct: 88 AKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIR 147
Query: 84 ACHNKKTLPGASSPLQVKYADGELERL---EHKLFIGMLPKNVSEVEVSALFSNYGTIKD 140
A HN+ TLPG P+QV+YADGE ERL E+KLF+G L K S EV +FS YG I+D
Sbjct: 148 ALHNRHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRIED 207
Query: 141 LQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWAD 191
+ ++R Q+ S+GC F+KY +D ALAA+ A+NG + M G PL+V++AD
Sbjct: 208 VYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQPLIVRFAD 258
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 105/185 (56%), Gaps = 22/185 (11%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VK++V VP+ +E ++ +F+ + + EV +++DKAT +G C V + DEAD A+
Sbjct: 74 VKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIK 133
Query: 84 ACHNKKTLPGASSPLQVKYADGELER-----------------LEHKLFIGMLPKNVSEV 126
A N+ T PG SSP+ V++AD + ER + K+++G + S+
Sbjct: 134 ALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQ 193
Query: 127 EVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLV 186
E+ +FS YG I+D+ +LR ++G F+K+ ++ ALAA++ ++ M G PL+
Sbjct: 194 EIEEIFSPYGHIEDVVVLR-----NRGYGFVKFYNREMALAAIKGLDRTFTMRGCDQPLI 248
Query: 187 VKWAD 191
V++A+
Sbjct: 249 VRFAE 253
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 106/185 (57%), Gaps = 22/185 (11%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VK++V VP+ +E ++ +F+ + + EV +++DKAT +G C V + DEAD A+
Sbjct: 74 VKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIK 133
Query: 84 ACHNKKTLPGASSPLQVKYADGELER---------LEH--------KLFIGMLPKNVSEV 126
A N+ T PG SSP+ V++AD + ER +E K+++G + S+
Sbjct: 134 ALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQ 193
Query: 127 EVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLV 186
E+ +FS YG I+D+ +LR ++G F+K+ ++ ALAA++ ++ M G PL+
Sbjct: 194 EIEEIFSPYGHIEDVVVLR-----NRGYGFVKFYNREMALAAIKGLDRTFTMRGCDQPLI 248
Query: 187 VKWAD 191
V++A+
Sbjct: 249 VRFAE 253
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 110 bits (275), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 105/185 (56%), Gaps = 22/185 (11%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
VK++V VP+ +E ++ +F+ + + EV +++DKAT +G C V + DEAD A+
Sbjct: 74 VKVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIK 133
Query: 84 ACHNKKTLPGASSPLQVKYADGELER-----------------LEHKLFIGMLPKNVSEV 126
A N+ T PG SSP+ V++AD + ER + K+++G + S+
Sbjct: 134 ALSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQ 193
Query: 127 EVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLV 186
E+ +FS YG I+D+ +LR ++G F+K+ ++ ALAA++ ++ M G PL+
Sbjct: 194 EIEEIFSPYGHIEDVVVLR-----NRGYGFVKFYNREMALAAIKGLDRTFTMRGCDQPLI 248
Query: 187 VKWAD 191
V++A+
Sbjct: 249 VRFAE 253
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 18/170 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
K+F+G + + T + + F ++ + + I+KD+ T RG F+ DK +
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 85 CHN--------KKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
H K+T+P + A G + K+F+G +P NV+E E F+ YG
Sbjct: 106 SHIINSKQVEIKRTIP--------RGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYG 157
Query: 137 TIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
+KD QI+R S S+G F+ ++T ++A+ L ++ K + G+ V +
Sbjct: 158 EVKDHQIMRDHSTNRSRGFGFVTFDT-EEAVDDLLSMGNKIEFAGTQVEI 206
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 115/271 (42%), Gaps = 33/271 (12%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
+FV + + T+DEL F EF + +++D + S+ FV S D+A +AV A
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGK-SKCFGFVNFESTDDAARAVEAL 273
Query: 86 HNKKT------------LPGASSPLQVKYADGELERLEH----KLFIGMLPKNVSEVEVS 129
+ KK L++K+ E + L++ L ++++ ++
Sbjct: 274 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLK 333
Query: 130 ALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKW 189
LFS+YGTI +++R S+G F+ + T ++A AL +NGK +S PL V
Sbjct: 334 ELFSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMV---ASKPLYVTL 390
Query: 190 ADTXXXXXXXXXXXXXXXXXNVPHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPY 249
A S PS+ MPM Y P G G Q YG P
Sbjct: 391 AQRKEDRRARLQAQFAQM-----RPVSMPPSVAPRMPM-YPPGGPGMGQQI--FYGQGPP 442
Query: 250 RMPPMQNQPGF---HNMMPHMNHGNALRPDL 277
+ P +QPGF ++P M G A P+
Sbjct: 443 AIIP--SQPGFGYQQQLVPGMRPGGAPVPNF 471
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
N+FI ++ + + L + F FG ++S KV VD +G SK +GFV +D+ EAAQ AI
Sbjct: 122 GNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIE 180
Query: 415 MMNGYQLGGKKLKV 428
+NG L K++ V
Sbjct: 181 KLNGMLLNDKQVYV 194
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
GANL++ ++ D+ L F +G + S KV D GVS+ GFV++ +PE A A+
Sbjct: 315 GANLYVKNLDDSIADEKLKELFSSYGTITSCKVMRD-PNGVSRGSGFVAFSTPEEASRAL 373
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
MNG + K L V Q K D +
Sbjct: 374 LEMNGKMVASKPLYVTLAQRKEDRR 398
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 7/155 (4%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
+F+ + K + L F F + + D + + S+G FV + + A KA+
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDGSGQ-SKGYGFVQFDTEEAAQKAIEKL 182
Query: 86 H-----NKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKD 140
+ +K+ G Q + + G+ + + +F+ L ++ ++ E+ F +GTI
Sbjct: 183 NGMLLNDKQVYVGPFLRKQERESTGDRAKF-NNVFVKNLSESTTDDELKKTFGEFGTITS 241
Query: 141 LQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
++R SK F+ +E+ D A A+EA+NGK
Sbjct: 242 AVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGK 276
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+F+ ++ + D +L F FG + SA V D G SKCFGFV+++S + A A+
Sbjct: 214 NVFVKNLSESTTDDELKKTFGEFGTITSAVVMRD-GDGKSKCFGFVNFESTDDAARAVEA 272
Query: 416 MNGYQLGGKKLKV 428
+NG ++ K+ V
Sbjct: 273 LNGKKIDDKEWYV 285
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
NL+I ++P D L FQ FG ++ AKV D+ TG+SK +GFV Y A +AI
Sbjct: 451 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIV 510
Query: 415 MMNGYQLGGKKLKVQ 429
MNGY+L G+ + V+
Sbjct: 511 AMNGYRLEGRTIAVR 525
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/81 (39%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
+ LFI + DQ L +AF +G V+ A+V D+ TG S+ FGFV++ S E+A SA+S
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 415 MMNGYQLGGKKLKVQHKRDNK 435
M+G L G+ ++V + D +
Sbjct: 96 -MDGQDLNGRNIRVSYANDRQ 115
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + E+ L F + V E I+KD+ T +RG FV+ AD V
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 85 CHN--------KKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNVSEVEVSAL 131
HN KK +P + + G + K+F+G L V+E +
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQNVLSR-TSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
Query: 132 FSNYGTIKDLQILRG-SQQTSKGCAFLKYETK---DQA-LAALEAINGK 175
F +GTI D+ ++ + Q +G F+ Y+++ DQ L +NGK
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGK 174
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 82/171 (47%), Gaps = 20/171 (11%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
K+F+G + K T +E + F+ + + + I+KD+ T RG F+ D+ +
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 85 CH--------NKKTLP-GASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNY 135
H K+T+P GAS K K+F+G +P VSE E+ FS +
Sbjct: 79 NHIINDKQVEIKRTIPKGASQTNDFK---------TKKIFVGGIPATVSEDELKIFFSKH 129
Query: 136 GTIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
G + + +I+R + + S+G F+ +++ D+A+ L A M+ + V +
Sbjct: 130 GNVVEHEIIRDHTTKRSRGFGFVVFDS-DKAVDNLLADGNMIDMDDTQVEI 179
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 74/169 (43%), Gaps = 19/169 (11%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + E+ L F + V E I+KD+ T +RG FV+ AD V
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQE 66
Query: 85 CHN--------KKTLPGASSPLQVKYADGELE-----RLEHKLFIGMLPKNVSEVEVSAL 131
HN KK +P + + G + K+F+G L V+E +
Sbjct: 67 KHNIDGRMVEAKKAVPRDDQNVLSR-TSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
Query: 132 FSNYGTIKDLQILRG-SQQTSKGCAFLKYETK---DQA-LAALEAINGK 175
F +GTI D+ ++ + Q +G F+ Y+++ DQ L +NGK
Sbjct: 126 FDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFHELNGK 174
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++F+G +P+ ++D++ + + + E+ +IKD+ T S+G FV +++ A KA++
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDLQI 143
HNK+ + K L +H+LFIG +PK +E E G ++ + +
Sbjct: 165 IHNKE--------FKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDL 216
Query: 144 LRGSQQTS--KGCAFLKYETKDQALAALEAING-KHKMEGSSVPLVVKWAD 191
++ Q S +G AF+ Y A + + ++ K++G + V WAD
Sbjct: 217 IKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDG--ITPTVTWAD 265
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P G+ +FI +P++ D D+ +P G ++ K+ D+ TG SK + FV Y + E AQ
Sbjct: 101 PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQK 160
Query: 412 AISMMNGYQLGGKKLK 427
AI ++ + GK L+
Sbjct: 161 AIDDIHNKEFKGKTLR 176
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++F+G +P+ ++D++ + + + E+ +IKD+ T S+G FV +++ A KA++
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDLQI 143
HNK+ + K L +H+LFIG +PK +E E G ++ + +
Sbjct: 165 IHNKE--------FKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDL 216
Query: 144 LRGSQQTS--KGCAFLKYETKDQALAALEAING-KHKMEGSSVPLVVKWAD 191
++ Q S +G AF+ Y A + + ++ K++G + V WAD
Sbjct: 217 IKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDG--ITPTVTWAD 265
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P G+ +FI +P++ D D+ +P G ++ K+ D+ TG SK + FV Y + E AQ
Sbjct: 101 PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQK 160
Query: 412 AISMMNGYQLGGKKLK 427
AI ++ + GK L+
Sbjct: 161 AIDDIHNKEFKGKTLR 176
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 86/171 (50%), Gaps = 14/171 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++F+G +P+ ++D++ + + + E+ +IKD+ T S+G FV +++ A KA++
Sbjct: 105 EVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDD 164
Query: 85 CHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDLQI 143
HNK+ + K L +H+LFIG +PK +E E G ++ + +
Sbjct: 165 IHNKE--------FKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDL 216
Query: 144 LRGSQQTS--KGCAFLKYETKDQALAALEAING-KHKMEGSSVPLVVKWAD 191
++ Q S +G AF+ Y A + + ++ K++G + V WAD
Sbjct: 217 IKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDG--ITPTVTWAD 265
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P G+ +FI +P++ D D+ +P G ++ K+ D+ TG SK + FV Y + E AQ
Sbjct: 101 PHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQK 160
Query: 412 AISMMNGYQLGGKKLK 427
AI ++ + GK L+
Sbjct: 161 AIDDIHNKEFKGKTLR 176
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 3/85 (3%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVIS-AKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
GANLFI ++ + ++ L + F FG +++ K+ D TG S+ FGF+SYDS EA+ SA
Sbjct: 111 GANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 170
Query: 413 ISMMNGYQLGGKKLKVQ--HKRDNK 435
I MNG L +++ V +K+D K
Sbjct: 171 IEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 80/154 (51%), Gaps = 7/154 (4%)
Query: 27 FVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNACH 86
+VG + ++E+ L +F + V V + KD+ T +G FV S ++AD A+ +
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 87 NKKTLPGASSPLQVKYADGELERLE--HKLFIGMLPKNVSEVEVSALFSNYGTI-KDLQI 143
K P++V A + + L+ LFIG L +V E + FS +G I + +I
Sbjct: 88 MIKLY---GKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 144 LRGSQQ-TSKGCAFLKYETKDQALAALEAINGKH 176
+R S+G F+ Y++ + + +A+EA+NG++
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQY 178
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 353 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
P LF+ I +Q L++AF +G+V+ A++ +D+ +G SK FGFV+Y++ E A SA
Sbjct: 42 PNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSA 101
Query: 413 ISMMNGYQLGGKKLKVQ 429
I ++G L G+++ V
Sbjct: 102 IQALDGQDLYGRRVGVN 118
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 49/77 (63%)
Query: 353 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
P LF+ I +Q L++AF +G+V+ A++ +D+ +G SK FGFV+Y++ E A SA
Sbjct: 42 PNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSA 101
Query: 413 ISMMNGYQLGGKKLKVQ 429
I ++G L G+++ V
Sbjct: 102 IQALDGQDLYGRRVGVN 118
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 353 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
P LFI + + L AF +G V+ A++ +D+ TG S+ FGF++++S E A SA
Sbjct: 40 PTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSA 99
Query: 413 ISMMNGYQLGGKKLKVQH 430
I ++G L G++++V +
Sbjct: 100 IQALDGQDLHGRRVRVNY 117
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P N+++ +I + D+DL F PFG + SA V D A G S+CFGFV++ SP++A +
Sbjct: 206 PKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAA 264
Query: 412 AISMMNGYQLGGKKL 426
A+ +NG + K+
Sbjct: 265 AVEKLNGTAINDDKV 279
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAV- 82
++V + + T+++L +F F ++ ++KD A SR FV S D A AV
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVE 267
Query: 83 ----NACHNKKTL--------PGASSPLQVKYADGELERLEH----KLFIGMLPKNVSEV 126
A ++ K L + L+ K+ + R E L++ L + +E
Sbjct: 268 KLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEE 327
Query: 127 EVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
++ LFS +GT+ +++ S SKG F+ + T ++A AL +NGK
Sbjct: 328 KLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGK 376
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
GANL++ ++ +F ++ L + F FG V S +V +D + G SK GFV++ +PE A A+
Sbjct: 312 GANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKAL 370
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
+ MNG +G K L V Q K + K
Sbjct: 371 NEMNGKLVGRKPLFVAVAQRKEERK 395
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+FI ++ + L + F FG V+S KV +D G SK +GFV +D+ EAA+SAI
Sbjct: 119 NVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQ 177
Query: 416 MNGYQLGGKKLKV 428
++G + K++ V
Sbjct: 178 LDGMLINDKQVYV 190
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P N+++ +I + D+DL F PFG + SA V D A G S+CFGFV++ SP++A +
Sbjct: 206 PKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAA 264
Query: 412 AISMMNGYQLGGKKL 426
A+ +NG + K+
Sbjct: 265 AVEKLNGTAINDDKV 279
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 18/169 (10%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAV- 82
++V + + T+++L +F F ++ ++KD A SR FV S D A AV
Sbjct: 209 TNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGFVNFQSPDSAAAAVE 267
Query: 83 ----NACHNKKTL--------PGASSPLQVKYADGELERLEH----KLFIGMLPKNVSEV 126
A ++ K L + L+ K+ + R E L++ L + +E
Sbjct: 268 KLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEE 327
Query: 127 EVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
++ LFS +GT+ +++ S SKG F+ + T ++A AL +NGK
Sbjct: 328 KLKDLFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGK 376
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
GANL++ ++ +F ++ L + F FG V S +V +D + G SK GFV++ +PE A A+
Sbjct: 312 GANLYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTPEEANKAL 370
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
+ MNG +G K L V Q K + K
Sbjct: 371 NEMNGKLVGRKPLFVAVAQRKEERK 395
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+FI ++ + L + F FG V+S KV +D G SK +GFV +D+ EAA+SAI
Sbjct: 119 NVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQ 177
Query: 416 MNGYQLGGKKLKV 428
++G + K++ V
Sbjct: 178 LDGMLINDKQVYV 190
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 24/184 (13%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLFVG + + TED L F ++ V I D+ TR RG FV A A+
Sbjct: 11 KLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHNALQD 70
Query: 85 CHN--------KKTLPGASSPLQVK-----------YADGELERLEHKLFIGMLPKNVSE 125
H +K +P + Q + Y G K+F+G LP N+S
Sbjct: 71 THAILGRKVEVRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGGLPANMSV 130
Query: 126 VEVSALFSNYGTIKDLQILRGS-QQTSKGCAFLKYETKDQA----LAALEAINGKHKMEG 180
E F +G I D+ +++ S +G F+ ++++D + + +NG+
Sbjct: 131 EEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLNGRQVEVK 190
Query: 181 SSVP 184
+VP
Sbjct: 191 RAVP 194
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 37/179 (20%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + ED L F+ F V E I+KD+ T +RG FV+ A++ V
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 85 CH--------NKKTLP---------------GASSPLQVKYADGELERLEHKLFIGMLPK 121
H KK +P G+ +P ++ K+F+G L
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIR---------TKKIFVGGLAS 115
Query: 122 NVSEVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
V+E + F +GTI D+ ++ + Q +G F+ Y++++ L +NGK
Sbjct: 116 TVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 37/179 (20%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + ED L F+ F V E I+KD+ T +RG FV+ A++ V
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 85 CH--------NKKTLP---------------GASSPLQVKYADGELERLEHKLFIGMLPK 121
H KK +P G+ +P ++ K+F+G L
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIR---------TKKIFVGGLAS 115
Query: 122 NVSEVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
V+E + F +GTI D+ ++ + Q +G F+ Y++++ L +NGK
Sbjct: 116 TVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 76/179 (42%), Gaps = 37/179 (20%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLF+G + ED L F+ F V E I+KD+ T +RG FV+ A++ V
Sbjct: 5 KLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVME 64
Query: 85 CH--------NKKTLP---------------GASSPLQVKYADGELERLEHKLFIGMLPK 121
H KK +P G+ +P ++ K+F+G L
Sbjct: 65 KHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIR---------TKKIFVGGLAS 115
Query: 122 NVSEVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETKDQALAAL----EAINGK 175
V+E + F +GTI D+ ++ + Q +G F+ Y++++ L +NGK
Sbjct: 116 TVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFHELNGK 174
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 39/179 (21%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFV-------------- 70
KLF+G + E+ L F + V E I++D+AT +RG FV
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 71 --ICPSRD-EADKAV------NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPK 121
I R EA KAV N ++ G+ P + K K+F+G LP
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTK-----------KIFVGGLPS 115
Query: 122 NVSEVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETK---DQAL-AALEAINGK 175
++E + F +GTI D+ ++ + Q +G F+ Y+++ D+ L +NGK
Sbjct: 116 TITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGK 174
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 74/168 (44%), Gaps = 22/168 (13%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKE-FALVDEVNIIKDKATRASRGCCFVICPSRDEADKAV 82
+ +FVG + +T+ L F + V ++ D T S+G FV E +A+
Sbjct: 190 LSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAM 249
Query: 83 NA-----CHNKKTLPGASSPLQVK-----------YADGELERLEHKLFIGMLPKNVSEV 126
C ++ GA++P + + E + +F+G L NV++
Sbjct: 250 TQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDE 309
Query: 127 EVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAING 174
++ FS YG I ++I G KGC F+++ ++ A AL+ +NG
Sbjct: 310 DLKQTFSQYGEIASVKIPVG-----KGCGFVQFANRNNAEEALQKLNG 352
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 39/179 (21%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFV-------------- 70
KLF+G + E+ L F + V E I++D+AT +RG FV
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIID 66
Query: 71 --ICPSRD-EADKAV------NACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPK 121
I R EA KAV N ++ G+ P + K K+F+G LP
Sbjct: 67 KHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTK-----------KIFVGGLPS 115
Query: 122 NVSEVEVSALFSNYGTIKDLQILRG-SQQTSKGCAFLKYETK---DQAL-AALEAINGK 175
++E + F +GTI D+ ++ + Q +G F+ Y+++ D+ L +NGK
Sbjct: 116 TITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGK 174
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
NL++ ++ + + L F FG++IS V D + G+SK FGFV++D+PE A+ A+
Sbjct: 189 TNLYMKNLDLDISETLLREKFSSFGKIISLAVAKD-SNGMSKGFGFVNFDNPEDAKRAME 247
Query: 415 MMNGYQLGGKKLKV 428
MNG QLG K L V
Sbjct: 248 TMNGLQLGSKILYV 261
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+F+ ++ + + L + F+ FG ++S+KV + + G SK +GFV +++ E+A +AI
Sbjct: 99 NVFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIER 157
Query: 416 MNGYQLGGKKLKV 428
+NGY +G K++ V
Sbjct: 158 LNGYLVGDKQIYV 170
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 348 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 407
QV G+N+++ +I D+ L + F G + SAK+ D G+SK FGFV + +PE
Sbjct: 285 QVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDD-KGISKGFGFVCFSTPE 343
Query: 408 AAQSAISMMNGYQLGGKKLKV---QHKRD 433
A A++ +G+ GK L V Q K D
Sbjct: 344 EANKAVNSFHGFMFHGKPLYVSLAQRKED 372
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + +++ +L F +F + V I +D ++ S +V S +A +A+
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE-V 70
Query: 86 HNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQIL 144
N TL G + + D + + +F+ L +++ + +F +G I +++
Sbjct: 71 KNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVV 130
Query: 145 RGSQQTSKGCAFLKYETKDQALAALEAING 174
SKG F+++ET++ A AA+E +NG
Sbjct: 131 MSEDGKSKGYGFVQFETEESANAAIERLNG 160
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
A+L++ + + D L +AF F + S ++ D ++G S C+G+V++ SP A AI
Sbjct: 10 ASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIE 69
Query: 415 MMNGYQLGGKKLKVQHKR 432
+ N L GK ++V R
Sbjct: 70 VKNHSTLNGKAIRVMWSR 87
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
AN+FI ++ + + L + F FG ++S K+ +D A+G+SK +GFV +++ E+AQSAI
Sbjct: 111 AANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAI 169
Query: 414 SMMNGYQLGGKKLKVQH-----KRDN 434
+NG L K + V H RDN
Sbjct: 170 DKLNGMLLNDKPVYVGHFQRKQDRDN 195
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
GANL++ ++ D+ L+ F FG V S K+ D G+S+ GFV++ +PE A A+
Sbjct: 305 GANLYLKNLDDSVTDEKLSELFSEFGTVTSCKILRD-PQGISRGSGFVAFSTPEEATRAL 363
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
+ MNG + GK L V Q K + K
Sbjct: 364 AEMNGKMVAGKPLYVAPAQKKEERK 388
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 6/152 (3%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + +T+ +L +F + V V I +D A++ S G +V + +A KA++
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 86 HNKKTLPGASSPLQVKYA--DGELERL-EHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
+ P + P+++ Y+ D + + +FI L + + + FS +G I +
Sbjct: 86 N---FTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCK 142
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAING 174
I + SKG F+++E ++ A +A++ +NG
Sbjct: 143 IAMDASGLSKGYGFVQFENEESAQSAIDKLNG 174
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 39/62 (62%)
Query: 114 LFIGMLPKNVSEVEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAIN 173
L++ L +V++ ++S LFS +GT+ +ILR Q S+G F+ + T ++A AL +N
Sbjct: 308 LYLKNLDDSVTDEKLSELFSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMN 367
Query: 174 GK 175
GK
Sbjct: 368 GK 369
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 350 EGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAA 409
E GANL++ ++ + D+ L F FG + S KV D A G SK FGFV++ + E A
Sbjct: 204 EKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFD-AHGHSKGFGFVAFSTSEEA 262
Query: 410 QSAISMMNGYQLGGKKLKV---QHKRDNK 435
AI+ M+G +G K L V Q K D K
Sbjct: 263 SKAINGMSGKIIGQKPLYVVVAQRKEDRK 291
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 352 PPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQS 411
P N+++ ++ + D+DL F +G VI++ V + G SKCFGFV++ SP++A +
Sbjct: 102 PKFTNVYVKNLLETDTDEDLKKLFSTYG-VITSAVIMKDENGNSKCFGFVNFQSPDSAAA 160
Query: 412 AISMMNG 418
A+ +NG
Sbjct: 161 AVEKLNG 167
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
++V + + T+++L +F + ++ I+KD+ S+ FV S D A AV
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDENGN-SKCFGFVNFQSPDSAAAAVEKL 165
Query: 86 HNKKTLPGA-------------SSPLQVKYADGELERLEH----KLFIGMLPKNVSEVEV 128
+ T G + L+ K+ +++R E L++ L +++++ ++
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKL 225
Query: 129 SALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
+FS +GTI +++ + SKG F+ + T ++A A+ ++GK
Sbjct: 226 KEMFSEFGTITSCKVMFDAHGHSKGFGFVAFSTSEEASKAINGMSGK 272
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 353 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
P NLF+ + + + L AFQ FG V+ A+V D+ +G SK FGFV Y + E A
Sbjct: 49 PSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKG 108
Query: 413 ISMMNGYQLGGKKLKVQHKRDNKP--------GKPY 440
I M+G L G + ++ R P G+PY
Sbjct: 109 IEGMDGKFLEGWVIFAEYARPRPPPGEAVNNTGRPY 144
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 22/168 (13%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKE-FALVDEVNIIKDKATRASRGCCFVICPSRDEADKAV 82
+ +FVG + +T+ LL F + + V ++ D T S+G FV E KA+
Sbjct: 187 LSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKAL 246
Query: 83 NA-----CHNKKTLPGASSPLQVK-YADG----------ELERLEHKLFIGMLPKNVSEV 126
N C ++ GA++P + Y G + + +F+G L + +
Sbjct: 247 NEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAE 306
Query: 127 EVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAING 174
++ FS YG I ++I G KGC F+++ ++ A AL+ +NG
Sbjct: 307 DLRQPFSQYGEIVSVKIPVG-----KGCGFVQFANRNNAEEALQKLNG 349
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
A LFI + + L AF +G V+ AK+ +D+ TG S+ FGF+++ + E A SA+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 415 MMNGYQLGGKKLKVQHKRDN-KPG 437
M+ +L G+ ++V + + +PG
Sbjct: 100 AMDNKELDGRTVRVNYATERARPG 123
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
A LFI + + L AF +G V+ AK+ +D+ TG S+ FGF+++ + E A SA+
Sbjct: 40 AKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQ 99
Query: 415 MMNGYQLGGKKLKVQHKRDN-KPG 437
M+ +L G+ ++V + + +PG
Sbjct: 100 AMDNKELDGRTVRVNYATERARPG 123
>Medtr5g017130.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr5:6226873-6227520 | 20130731
Length = 176
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 42/69 (60%)
Query: 361 HIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQ 420
++P E + DL FQPFG VI A + + + TG+S F FV++ + EAAQSAI +NG
Sbjct: 101 NLPPETRNHDLLQLFQPFGHVIGADIAIAQHTGLSGRFAFVNFATKEAAQSAIERLNGID 160
Query: 421 LGGKKLKVQ 429
L+V+
Sbjct: 161 YHNFILRVE 169
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + ++ + +L +F + V V + +D ATR S G +V + +A +A++
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 86 HNKKTLPGASSPLQVKYADGELERLEH---KLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
+ P + ++V Y+ + + +FI L K + + FS++G I +
Sbjct: 94 N---FTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCK 150
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAING 174
I SKG F+++E +D A A++ +NG
Sbjct: 151 IATDGSGQSKGYGFVQFEAEDSAQNAIDKLNG 182
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 356 NLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISM 415
N+++ ++ + F + DL N F +G + SA V + A G SKCFGFV++++ E A A+
Sbjct: 212 NVYVKNLSESFTEDDLKNEFGAYGTITSA-VLMRDADGRSKCFGFVNFENAEDAAKAVEA 270
Query: 416 MNGYQLGGKKLKV 428
+NG ++ K+ V
Sbjct: 271 LNGKKVDDKEWYV 283
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 6/85 (7%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
AN+FI ++ + + L + F FG+++S K+ D +G SK +GFV +++ ++AQ+AI
Sbjct: 120 ANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQSKGYGFVQFEAEDSAQNAID 178
Query: 415 MMNGYQLGGKKLKVQH-----KRDN 434
+NG + K++ V H RDN
Sbjct: 179 KLNGMLINDKQVFVGHFLRKQDRDN 203
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
++V + + TED+L F + + +++D R S+ FV + ++A KAV A
Sbjct: 213 VYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGR-SKCFGFVNFENAEDAAKAVEAL 271
Query: 86 HNKKT------------LPGASSPLQVKYADGELERLEHK-----LFIGMLPKNVSEVEV 128
+ KK L+ ++ E + K L++ L ++++ ++
Sbjct: 272 NGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKL 331
Query: 129 SALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVK 188
+FS +GTI +I+R S+G F+ + T ++A AL +NGK + S PL V
Sbjct: 332 KEMFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIV---SKPLYVA 388
Query: 189 WA 190
A
Sbjct: 389 VA 390
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G NL++ ++ D+ L F FG + S K+ D GVS+ GFV++ +PE A A+
Sbjct: 314 GLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRD-PNGVSRGSGFVAFSTPEEASRAL 372
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
MNG + K L V Q K D +
Sbjct: 373 GEMNGKMIVSKPLYVAVAQRKEDRR 397
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 44/80 (55%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LFI + + D+ L AF PFG+++ AKV D+ +G SK F FVSY + E A+ A M
Sbjct: 37 LFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGM 96
Query: 417 NGYQLGGKKLKVQHKRDNKP 436
N L G + V + +P
Sbjct: 97 NAKFLDGWVIFVDPAKPREP 116
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
GANL++ +I + ++ L F FG + S KV D A G SK GFV++ +PE A AI
Sbjct: 303 GANLYLKNIDKSLNEEKLKELFSEFGTITSCKVMSD-ARGRSKGVGFVAFTTPEEASKAI 361
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
MNG +G K + V Q K + K
Sbjct: 362 DEMNGKIIGQKPVYVSVAQRKEERK 386
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 80/170 (47%), Gaps = 20/170 (11%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIK-DKATRASRGCCFVICPSRDEADKAV 82
++V + + T ++L +F F ++ V I+K D S+ FV S D A AV
Sbjct: 200 TNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGN--SKCFGFVNFQSSDSAATAV 257
Query: 83 NACHNKKTLPGA-------------SSPLQVKYADGELERLEH----KLFIGMLPKNVSE 125
+ T G + L+ + +L+R E L++ + K+++E
Sbjct: 258 EKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNE 317
Query: 126 VEVSALFSNYGTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGK 175
++ LFS +GTI +++ ++ SKG F+ + T ++A A++ +NGK
Sbjct: 318 EKLKELFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGK 367
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 6/152 (3%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + ++ + +L +F + A V V + +D+ T++S G +V + A A NA
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYV---NYSNARDAANAM 83
Query: 86 HNKKTLPGASSPLQVKYADGE-LERLE--HKLFIGMLPKNVSEVEVSALFSNYGTIKDLQ 142
N +P P+++ ++ + L R LFI L ++ + FS +G + +
Sbjct: 84 ENLNYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCK 143
Query: 143 ILRGSQQTSKGCAFLKYETKDQALAALEAING 174
+ S SKG F++++ A A+E ++G
Sbjct: 144 VAMDSNGHSKGHGFVQFDNDQSAKNAIEKLDG 175
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
ANLFI ++ ++ L F FG V+S KV +D + G SK GFV +D+ ++A++AI
Sbjct: 113 ANLFIKNLETSIDNKALHETFSVFGNVLSCKVAMD-SNGHSKGHGFVQFDNDQSAKNAIE 171
Query: 415 MMNGYQLGGKKLKV 428
++G + KK+ V
Sbjct: 172 KLDGMLMNDKKVYV 185
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 41/60 (68%)
Query: 371 LANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQH 430
L AF +G V+ A++ +D+ TG S+ FGF++++S E A SAI ++G L G++++V +
Sbjct: 66 LREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNY 125
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 71/150 (47%), Gaps = 2/150 (1%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L+VG + +T+ +L F EF + + KD AT S +V S EA +A+
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIE-L 75
Query: 86 HNKKTLPGASSPLQVKYADGELERL-EHKLFIGMLPKNVSEVEVSALFSNYGTIKDLQIL 144
N +L G + D + + + +F+ L ++ V + LF YG I +I
Sbjct: 76 KNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIA 135
Query: 145 RGSQQTSKGCAFLKYETKDQALAALEAING 174
R SKG ++++++++ A A++ +NG
Sbjct: 136 RSEDGKSKGFGYIQFDSEESANVAIQKMNG 165
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%)
Query: 349 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 408
V P A L++ + + D L AF F +ISA+V D ATG S C+G+V+ S +
Sbjct: 9 VPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQE 68
Query: 409 AQSAISMMNGYQLGGKKLKV 428
A AI + N L GK ++V
Sbjct: 69 AIRAIELKNHSSLNGKVIRV 88
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
NL++ ++ ++ L F FG+++S + D+ G SK FGFV+YDSP+ A+ A+
Sbjct: 194 TNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDE-NGQSKGFGFVNYDSPDDARRAME 252
Query: 415 MMNGYQLGGKKLKV 428
M+G Q G K L V
Sbjct: 253 AMDGSQFGSKILYV 266
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G+N+++ +I GD++L + F G V+SAKV D G SK FGFV + + A ++
Sbjct: 292 GSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDD-KGTSKGFGFVCFSTVVEAFKSM 350
Query: 414 SMMNGYQLGGKKLKV---QHKRDNK 435
S NG GK L V Q K D K
Sbjct: 351 SCFNGCMFHGKPLYVDFAQKKEDRK 375
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++FVG + K TED+L +F E +V EV ++ + T+ ++G F+ + ++A +AV
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 85 CHNKKTLPGAS---SPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG--TIK 139
N + G +P Q L++G + K ++ + +YG ++
Sbjct: 275 LKN-PVINGKQCGVTPSQDS----------DTLYLGNICKTWTKEALKEKLKHYGVTNVE 323
Query: 140 DLQILRGSQQ--TSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADT 192
D+ ++ S T++G AFL++ ++ A+ A + + + G P V +AD+
Sbjct: 324 DITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS 378
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFAL--VDEVNIIKDKATRAS-RGCCFVICPSRDEADKAV 82
L++G + K T++ L K + + V+++ +++D + + RG F+ SR +A A
Sbjct: 296 LYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAF 355
Query: 83 NACHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
+ G P +V +AD E+ +FI LP + E V L YG
Sbjct: 356 KRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYG 415
Query: 137 TIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEG 180
++ +++ R K F+ + + D A+ ++I G EG
Sbjct: 416 EVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEG 460
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++FVG + K TED+L +F E +V EV ++ + T+ ++G F+ + ++A +AV
Sbjct: 215 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 274
Query: 85 CHNKKTLPGAS---SPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG--TIK 139
N + G +P Q L++G + K ++ + +YG ++
Sbjct: 275 LKN-PVINGKQCGVTPSQDS----------DTLYLGNICKTWTKEALKEKLKHYGVTNVE 323
Query: 140 DLQILRGSQQ--TSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADT 192
D+ ++ S T++G AFL++ ++ A+ A + + + G P V +AD+
Sbjct: 324 DITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS 378
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFAL--VDEVNIIKDKATRAS-RGCCFVICPSRDEADKAV 82
L++G + K T++ L K + + V+++ +++D + + RG F+ SR +A A
Sbjct: 296 LYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAF 355
Query: 83 NACHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
+ G P +V +AD E+ +FI LP + E V L YG
Sbjct: 356 KRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYG 415
Query: 137 TIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEG 180
++ +++ R K F+ + + D A+ ++I G EG
Sbjct: 416 EVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEG 460
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++FVG + K TED+L +F E +V EV ++ + T+ ++G F+ + ++A +AV
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 85 CHNKKTLPGAS---SPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG--TIK 139
N + G +P Q L++G + K ++ + +YG ++
Sbjct: 276 LKN-PVINGKQCGVTPSQDS----------DTLYLGNICKTWTKEALKEKLKHYGVTNVE 324
Query: 140 DLQILRGSQQ--TSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADT 192
D+ ++ S T++G AFL++ ++ A+ A + + + G P V +AD+
Sbjct: 325 DITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS 379
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFAL--VDEVNIIKDKATRAS-RGCCFVICPSRDEADKAV 82
L++G + K T++ L K + + V+++ +++D + + RG F+ SR +A A
Sbjct: 297 LYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAF 356
Query: 83 NACHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
+ G P +V +AD E+ +FI LP + E V L YG
Sbjct: 357 KRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYG 416
Query: 137 TIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEG 180
++ +++ R K F+ + + D A+ ++I G EG
Sbjct: 417 EVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEG 461
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 85/175 (48%), Gaps = 18/175 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++FVG + K TED+L +F E +V EV ++ + T+ ++G F+ + ++A +AV
Sbjct: 216 EVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAE 275
Query: 85 CHNKKTLPGAS---SPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG--TIK 139
N + G +P Q L++G + K ++ + +YG ++
Sbjct: 276 LKN-PVINGKQCGVTPSQDS----------DTLYLGNICKTWTKEALKEKLKHYGVTNVE 324
Query: 140 DLQILRGSQQ--TSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKWADT 192
D+ ++ S T++G AFL++ ++ A+ A + + + G P V +AD+
Sbjct: 325 DITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADS 379
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 10/165 (6%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFAL--VDEVNIIKDKATRAS-RGCCFVICPSRDEADKAV 82
L++G + K T++ L K + + V+++ +++D + + RG F+ SR +A A
Sbjct: 297 LYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAF 356
Query: 83 NACHNKKTLPGASSPLQVKYADG------ELERLEHKLFIGMLPKNVSEVEVSALFSNYG 136
+ G P +V +AD E+ +FI LP + E V L YG
Sbjct: 357 KRLQKRDVTFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYG 416
Query: 137 TIKDLQILRG-SQQTSKGCAFLKYETKDQALAALEAINGKHKMEG 180
++ +++ R K F+ + + D A+ ++I G EG
Sbjct: 417 EVEKIELARNMPAARRKDYGFVTFGSHDAAIRCADSITGTELGEG 461
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 355 ANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 414
+ LFI + DQ L +AF +G V+ A+V D+ TG S+ FGFV++ S E+A SA+S
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
Query: 415 M 415
M
Sbjct: 96 M 96
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LF+ ++ + L AFQ G V+ A+V D TG S+ +GFVSY + +A+++M
Sbjct: 206 LFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIM 265
Query: 417 NGYQLGGKKLKV---QHKR 432
+ +L G+ L+V Q KR
Sbjct: 266 DNVELEGRTLRVSLAQGKR 284
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
KL+ G +P + L + +E+ + + ++ D+ T SRG FV ++ + +
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 84 ACHNKKTLPGASSPLQVKYADGELER------LEHKLFIGMLPKNVSEVEVSALFSNYGT 137
K+ + L+V ++D + E+KLF+G L V+ ++ F +GT
Sbjct: 173 NLDGKEFM---GRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGT 229
Query: 138 IKDLQIL-RGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL 185
+ ++L G S+G F+ Y TK + AL AI ++EG ++ +
Sbjct: 230 VVGARVLFDGETGKSRGYGFVSYATKSEMDTAL-AIMDNVELEGRTLRV 277
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%)
Query: 359 IYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG 418
+ ++ ++ + DL F+PFG V V +D+ TG+S+ FGFV++ S E AQ AI+ +NG
Sbjct: 215 VTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINKLNG 274
Query: 419 YQLGGKKLKVQ 429
Y L+V+
Sbjct: 275 YGYDNLILRVE 285
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
+F+ IP +F + D+ F +G V+ + DK TG SK F F++Y+ + A+ +
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 417 NGYQLGGKKLKVQH 430
NG Q+ G+ ++V H
Sbjct: 98 NGAQVSGRIIRVDH 111
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KL+VG +P+ ++ DEL + +E V++ ++ DK ++ SR FV + ++A+ A
Sbjct: 61 KLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEK 120
Query: 85 CH-----------NKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFS 133
+ N P + L V+ + +K+++G L KNV+ + FS
Sbjct: 121 LNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLKKFFS 180
Query: 134 NYGTIKDLQILR--GSQQTSKGCAFLKYETKDQALAALEAIN 173
G ++ R G+ ++S G F+ + + + AA+ + N
Sbjct: 181 EKGNALSAKVSRAPGTSKSS-GFGFVTFSSDEDVEAAISSFN 221
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%)
Query: 349 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 408
V+ P L++ +IP+ + +L Q G V A+V DK + S+ F FV+ + E
Sbjct: 54 VDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVED 113
Query: 409 AQSAISMMNGYQLGGKKLKV 428
A +A +NG ++GG+++KV
Sbjct: 114 ANAAAEKLNGTEIGGREIKV 133
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 31/243 (12%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLFV + T + L T+F + +DE +I DKAT S+G FV+ D AV A
Sbjct: 77 KLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVY---RHVDGAVLA 133
Query: 85 CHN-KKTLPGASSPLQVKYAD---GELERLEHKLFIGMLPKNVSEVEVSALFSNYGTIKD 140
K + G + Q+ A G++ K+F+G +P VS + + FS YG I++
Sbjct: 134 LKEPSKKIDGRMTVTQLAAAGSTGGDVS--SRKVFVGNVPFEVSAESLLSEFSKYGEIEE 191
Query: 141 --LQILRGSQQTSKGCAFLKYET----KDQALAALEAINGKHKMEGSSVPLVVKWADTXX 194
L + S +T +G AF Y+T K+ +++ ++G ++ K+A
Sbjct: 192 GPLGFDKASGKT-RGFAFFVYKTEEGAKNSVAESMKTVDGHQ--------VICKFAVDNK 242
Query: 195 XXXXXXXXXXXXXXXNV-----PHADSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGLMPY 249
N P + P +GA P YV YG Q P + G P
Sbjct: 243 KPKPVGQNPSGFPVDNSNVNYHPPNPTMMPPQYGAPPNSYV--QQPYGNQVPAAGGYGPG 300
Query: 250 RMP 252
+P
Sbjct: 301 PVP 303
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 349 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 408
VE P A LF+ + P + + LA F G V A+V ++ T +S+ FGFV+ + E
Sbjct: 103 VEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEE 162
Query: 409 AQSAISMMNGYQLGGKKLKV 428
A+SA+ NGY G+ L V
Sbjct: 163 AESAVEKFNGYDYNGRSLVV 182
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%)
Query: 349 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 408
VE P A LF+ + P + + LA F G V A+V ++ T +S+ FGFV+ + E
Sbjct: 103 VEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEE 162
Query: 409 AQSAISMMNGYQLGGKKLKV 428
A+SA+ NGY G+ L V
Sbjct: 163 AESAVEKFNGYDYNGRSLVV 182
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 353 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
P +++ ++ E + L F G+++SA+V D+ TG S+ FGFV+ A
Sbjct: 204 PVLRIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDA 263
Query: 413 ISMMNGYQLGGKKLKVQHKRD 433
I+ ++G L G+ ++V D
Sbjct: 264 IAALDGQSLEGRTIRVSVAED 284
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
KLFVG P + ++L +F + V+ +I ++ T SRG FV + +EA+ AV
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 85 C----HNKKTL------PGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSN 134
+N ++L P S P + + A E + ++++ L V + +FS
Sbjct: 170 FNGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPV-LRIYVANLAWEVDNSRLEQVFSE 228
Query: 135 YGTIKDLQILRGSQQ-TSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVV 187
+G I +++ + S+G F+ + + A+ A++G+ +EG ++ + V
Sbjct: 229 HGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQS-LEGRTIRVSV 281
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 349 VEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEA 408
+ A L++ I D L +F +G V+ A+V +D+ G SK FGFV++ + E
Sbjct: 34 IRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEE 93
Query: 409 AQSAISMMNGYQLGGKKLKVQHKRDN 434
A +A+ M+ +L G+ ++V + ++
Sbjct: 94 ASAALQAMDNQELHGRTVRVNYAQER 119
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 18/167 (10%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
+L+VG +P MT +L +F E V V I+ D+ T SRG FV S +EA +A+
Sbjct: 110 RLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRM 169
Query: 85 CHNKKTLPGASSPLQVKYADGELERLE----------------HKLFIGMLPKNVSEVEV 128
+ + G S+ + ERL HK++ G L ++ ++
Sbjct: 170 FDGSQ-VGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDL 228
Query: 129 SALFSNY-GTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAING 174
F G + I S+G F+ +ET + AAL A+NG
Sbjct: 229 RDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNG 275
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
L++ ++P LA+ F G V+S ++ D+ T S+ F FV+ S E A+ AI M
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 417 NGYQLGGKKLKV 428
+G Q+GG+ KV
Sbjct: 171 DGSQVGGRSAKV 182
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 25/175 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++++G +P +E +L + V EV ++K K ++G FV +++ A KA+
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALKE 158
Query: 85 CHNK--KTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDL 141
+N K SP QVK H+LFIG +PK + ++ + + G + +
Sbjct: 159 LNNSEFKGRKIKCSPSQVK----------HRLFIGSVPKEWTVEDMKKVVAKVGPGVISV 208
Query: 142 QILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL-----VVKWAD 191
++L+ Q +S+ F E + A A + KM S+ L +V WAD
Sbjct: 209 ELLKDPQSSSRNRGFAFIEYHNHACAEY----SRQKMSNSNFKLDNNDAIVSWAD 259
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 25/175 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++++G +P +E +L + V EV ++K K ++G FV +++ A KA+
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALKE 158
Query: 85 CHNK--KTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDL 141
+N K SP QVK H+LFIG +PK + ++ + + G + +
Sbjct: 159 LNNSEFKGRKIKCSPSQVK----------HRLFIGSVPKEWTVEDMKKVVAKVGPGVISV 208
Query: 142 QILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL-----VVKWAD 191
++L+ Q +S+ F E + A A + KM S+ L +V WAD
Sbjct: 209 ELLKDPQSSSRNRGFAFIEYHNHACAEY----SRQKMSNSNFKLDNNDAIVSWAD 259
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 25/175 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++++G +P +E +L + V EV ++K K ++G FV +++ A KA+
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALKE 158
Query: 85 CHNK--KTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDL 141
+N K SP QVK H+LFIG +PK + ++ + + G + +
Sbjct: 159 LNNSEFKGRKIKCSPSQVK----------HRLFIGSVPKEWTVEDMKKVVAKVGPGVISV 208
Query: 142 QILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL-----VVKWAD 191
++L+ Q +S+ F E + A A + KM S+ L +V WAD
Sbjct: 209 ELLKDPQSSSRNRGFAFIEYHNHACAEY----SRQKMSNSNFKLDNNDAIVSWAD 259
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 80/175 (45%), Gaps = 25/175 (14%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
++++G +P +E +L + V EV ++K K ++G FV +++ A KA+
Sbjct: 102 EVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE---AKGYAFVTFKTKELASKALKE 158
Query: 85 CHNK--KTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSNYG-TIKDL 141
+N K SP QVK H+LFIG +PK + ++ + + G + +
Sbjct: 159 LNNSEFKGRKIKCSPSQVK----------HRLFIGSVPKEWTVEDMKKVVAKVGPGVISV 208
Query: 142 QILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPL-----VVKWAD 191
++L+ Q +S+ F E + A A + KM S+ L +V WAD
Sbjct: 209 ELLKDPQSSSRNRGFAFIEYHNHACAEY----SRQKMSNSNFKLDNNDAIVSWAD 259
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 17/164 (10%)
Query: 24 VKLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVN 83
+K+FVG +P + ++L +F++ V+ +I ++ T SRG FV + +E ++AVN
Sbjct: 122 LKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVN 181
Query: 84 ACH-----------NKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALF 132
NK G Q + + L + ++G LP +V + LF
Sbjct: 182 KFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGL-----RAYVGNLPWDVDNSSLEQLF 236
Query: 133 SNYGTIKDLQILRGSQQ-TSKGCAFLKYETKDQALAALEAINGK 175
S +G ++ Q++ + S+G F+ + + A+ A++G+
Sbjct: 237 SEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQ 280
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
+F+ +IP + ++ L + G VIS ++ D+ TG K +GF Y E A SA +
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 417 NGYQLGGKKLKVQHKRDNK 435
GY++ G++L+V ++K
Sbjct: 91 QGYEINGRQLRVDFAENDK 109
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 348 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 407
+ E LF+ ++P LA F G V+S ++ D T S+ F FV+ + E
Sbjct: 101 EAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVE 160
Query: 408 AAQSAISMMNGYQLGGKKLKVQ 429
A+ AI M +G +GG+ +KV
Sbjct: 161 DAEEAIRMFDGTTVGGRAIKVN 182
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
+LFVG +P ++ +L +F E V V I+ D T SRG FV + ++A++A+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR- 167
Query: 85 CHNKKTLPGASSPLQVKYADGEL--ERLE------------HKLFIGMLPKNVSEVEVSA 130
+ T+ G + ++V + + + +R++ HK++ G L +++ +
Sbjct: 168 MFDGTTVGGRA--IKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 131 LFSNY-GTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKW 189
F+ G + + + S+G F+ +ET + AL A+NG +E PL +K
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNG---VEVQGRPLRLKL 282
Query: 190 A 190
A
Sbjct: 283 A 283
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%)
Query: 348 QVEGPPGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPE 407
+ E LF+ ++P LA F G V+S ++ D T S+ F FV+ + E
Sbjct: 101 EAESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVE 160
Query: 408 AAQSAISMMNGYQLGGKKLKVQ 429
A+ AI M +G +GG+ +KV
Sbjct: 161 DAEEAIRMFDGTTVGGRAIKVN 182
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 21/181 (11%)
Query: 25 KLFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNA 84
+LFVG +P ++ +L +F E V V I+ D T SRG FV + ++A++A+
Sbjct: 109 RLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIR- 167
Query: 85 CHNKKTLPGASSPLQVKYADGEL--ERLE------------HKLFIGMLPKNVSEVEVSA 130
+ T+ G + ++V + + + +R++ HK++ G L +++ +
Sbjct: 168 MFDGTTVGGRA--IKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRK 225
Query: 131 LFSNY-GTIKDLQILRGSQQTSKGCAFLKYETKDQALAALEAINGKHKMEGSSVPLVVKW 189
F+ G + + + S+G F+ +ET + AL A+NG +E PL +K
Sbjct: 226 AFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNG---VEVQGRPLRLKL 282
Query: 190 A 190
A
Sbjct: 283 A 283
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 76/157 (48%), Gaps = 9/157 (5%)
Query: 26 LFVGQVPKHMTEDELLTMFKEFALVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 85
L++G + + E+ L F V + II++K T G F+ S A++ +
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ-T 75
Query: 86 HNKKTLPGASSPLQVKYAD-GELERL-----EHKLFIGMLPKNVSEVEVSALF-SNYGTI 138
+N +PG ++ +A G ER +H +F+G L +V++ + F ++YG++
Sbjct: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
Query: 139 KDLQILRG-SQQTSKGCAFLKYETKDQALAALEAING 174
+ +++ + SKG F+K+ + + A+ +NG
Sbjct: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNG 172
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 359 IYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNG 418
+ ++ ++ + DL F FG V V +DK TG S+ FGFV++ + E AQ AI+ +NG
Sbjct: 203 VTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKLNG 262
Query: 419 YQLGGKKLKVQ 429
Y LKV+
Sbjct: 263 YGYDNLILKVE 273
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 369 QDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKV 428
Q L AF FG + +KV D+ TG S+ FGFV++ ++ + AI MNG + G+ + V
Sbjct: 22 QALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMNGQDIDGRNITV 81
Query: 429 QH 430
Sbjct: 82 NE 83
>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:31620260-31623626 | 20130731
Length = 270
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 353 PGANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSA 412
PG L++ + D+DL + F G+V S + V+ T +S+ F FV+ DS E A+
Sbjct: 60 PGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERC 119
Query: 413 ISMMNGYQLGGKKLKVQHKRDNKPGKP 439
I +N L G+ + V+ R + P
Sbjct: 120 IKHLNQSVLEGRYITVERSRRKRARTP 146
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%)
Query: 358 FIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMN 417
F+ + ++ L AF +G ++ +K+ D+ TG S+ FGFV++ + ++ AI MN
Sbjct: 9 FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMN 68
Query: 418 GYQLGGKKLKVQH 430
G L G+ + V
Sbjct: 69 GQDLDGRNITVNQ 81
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LF+ + ++ L++AF +G+V+ AKV D+ + SK +GFV++ S + A+ AI+ M
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 417 NGYQLGGKKLKVQHKR 432
N L G+ + V + +
Sbjct: 94 NEKALNGRVVFVDYAK 109
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 368 DQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLK 427
++ L AF +G ++ +K+ D+ TG S+ FGFV++ + ++ AI MNG L G+ +
Sbjct: 19 NEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNIT 78
Query: 428 VQHKR 432
V +
Sbjct: 79 VNQAQ 83
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LF+ + ++ L +AF FG V ++ DK +G ++ FGFV + + +AA+SA M
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 417 NGYQLGGKKLKVQHKRDNKPGKP 439
+G L G+ L++ + G P
Sbjct: 98 DGKALLGRPLRINFALEKPRGIP 120
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 371 LANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMMNGYQLGGKKLKVQH 430
L AF +G +I +K+ D+ TG S+ FGFV++ ++ + AI MNG + G+ + V
Sbjct: 24 LEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNE 83
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
LF+ + ++ L AF+ FG ++ KV +DK + SK + F+ Y + EAA +A+ M
Sbjct: 194 LFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKEM 253
Query: 417 NGYQLGGKKLKVQHKRDNKP 436
NG + G + V + P
Sbjct: 254 NGKIINGWMIVVDVAKTTPP 273
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%)
Query: 354 GANLFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 413
G LF+ + Q L + F PFG + A + D+ T K FGFVSY S A+ A
Sbjct: 6 GTKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKAR 65
Query: 414 SMMNGYQLGGKKLKVQHKR 432
+NG + G+ + V+H +
Sbjct: 66 KALNGRIVDGRLIFVEHAK 84
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
+F+ +P F + + Q FG + S + DK TG SK +GF Y P A + +
Sbjct: 180 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 239
Query: 417 NGYQLGGKKLKVQHKRDNKPGKP 439
NG ++G K L V+ + KP
Sbjct: 240 NGLKMGDKTLTVRRATVSAHSKP 262
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 357 LFIYHIPQEFGDQDLANAFQPFGRVISAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 416
+F+ +P F + + Q FG + S + DK TG SK +GF Y P A + +
Sbjct: 137 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 196
Query: 417 NGYQLGGKKLKVQHKRDNKPGKP 439
NG ++G K L V+ + KP
Sbjct: 197 NGLKMGDKTLTVRRATVSAHSKP 219