Miyakogusa Predicted Gene
- Lj1g3v4764220.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4764220.1 tr|O82460|O82460_LOTJA Rac GTPase activating
protein 3 (Fragment) OS=Lotus japonicus PE=2 SV=1,99.77,0,GTPase
activation domain, GAP,Rho GTPase activation protein;
CRIB,PAK-box/P21-Rho-binding; RHOGAP,Rh,CUFF.33273.1
(458 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g107560.1 | Rac GTPase activating protein | HC | chr7:4387... 494 e-140
Medtr1g089500.1 | Rac GTPase activating protein | HC | chr1:3999... 485 e-137
Medtr8g026680.1 | Rac GTPase activating protein | HC | chr8:9249... 355 5e-98
Medtr7g104900.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti... 338 7e-93
Medtr4g052850.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti... 334 1e-91
Medtr2g086580.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti... 321 9e-88
Medtr7g081615.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti... 249 3e-66
Medtr5g064420.1 | PAK-box/P21-Rho-binding domain Rho GTPase acti... 188 1e-47
>Medtr7g107560.1 | Rac GTPase activating protein | HC |
chr7:43875012-43878185 | 20130731
Length = 435
Score = 494 bits (1273), Expect = e-140, Method: Compositional matrix adjust.
Identities = 283/460 (61%), Positives = 313/460 (68%), Gaps = 27/460 (5%)
Query: 1 MTGPVMVTXXXXXXXXXXXXXXXDAVEEAEQNQGSPAAFLLAALKKSMVACSVDSPDDVI 60
M GPVMV+ D EE SPAA +LAALKKSMVACSV+SPDDVI
Sbjct: 1 MRGPVMVSGGCGGVKGRRGSR--DGSEEV-----SPAALMLAALKKSMVACSVESPDDVI 53
Query: 61 SAVH-PMEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQ 119
SAVH PMEIGWPTNVKHV HVTFDRFNGFLGLPLELEVH MQ
Sbjct: 54 SAVHHPMEIGWPTNVKHVNHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQ 113
Query: 120 CSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDV 179
CSYDSKGNSVPTILLLMQERLYSQGGL AEGIFRINPENG+EEHLR+QLN G+VP++IDV
Sbjct: 114 CSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENGEEEHLREQLNSGIVPNDIDV 173
Query: 180 HCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMAD 239
HCLAGLIKAWFRELPSGVLDGLSPE+VLECNTEEE V+LVKQLKP E ALLNWA+DLMAD
Sbjct: 174 HCLAGLIKAWFRELPSGVLDGLSPEEVLECNTEEESVELVKQLKPVESALLNWAVDLMAD 233
Query: 240 VVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEATTA 299
VV EEE NKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTL +REE TA
Sbjct: 234 VVVEEECNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLRDREETATA 293
Query: 300 GYXXXXXXXXXXXXEDEYDSQLEMYTSAELRGSQSDCDDHVXXXXXXXXXXXXXXXXXXX 359
Y DEYDSQ EMYTS EL+ ++ D DDHV
Sbjct: 294 EYSSMSSHSS-----DEYDSQQEMYTSGELKRTKLDYDDHV---DYSHNIEEAASALSEI 345
Query: 360 XXCFLKQLNENKQGGFA-EEPARSTCSGYNLESAVSFTDAKPDNSCSSSYEDDXXXXXXX 418
CFL+QL++ + F E+PA +L+ + D+ SSSY +
Sbjct: 346 EECFLEQLDDVQTKRFTKEKPAE------HLQEELESPTKTEDSCLSSSYRNGSTTTEGS 399
Query: 419 XXXXXXXXXXXXXXTYCTNDVEMMDKFADCVSLVPLFASS 458
TNDVEM+DKF+D +SL+PLFAS+
Sbjct: 400 NADTSSPSIESKN----TNDVEMVDKFSDSISLLPLFASN 435
>Medtr1g089500.1 | Rac GTPase activating protein | HC |
chr1:39993064-39989777 | 20130731
Length = 483
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 272/494 (55%), Positives = 310/494 (62%), Gaps = 47/494 (9%)
Query: 1 MTGPVMVTXXXXXXXXXXXXXXXDAVEEAEQNQGSPAAFLLAALKKSMVACSVDSPD-DV 59
MTG VMVT E+ +QNQ S A LLAA++KSMVAC VD PD +V
Sbjct: 1 MTGLVMVTRGGGCGGGSKRTRPTQTEEDEQQNQLSLVALLLAAIRKSMVACRVDRPDHEV 60
Query: 60 ISAVHPMEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVHXXXXXXXXXXXXXXXXXXXMQ 119
IS VH MEIGWPT+V+H+THVTFDRFNGFLGLP+E EV MQ
Sbjct: 61 ISTVHQMEIGWPTDVQHITHVTFDRFNGFLGLPVEFEVEIPGRVPSASVSVFGVSAESMQ 120
Query: 120 CSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNIDV 179
CSYDSKGNSVPTIL+LMQ+RLYSQGGL AEGIFRINPEN +EEH+R+QLN G+VPD+IDV
Sbjct: 121 CSYDSKGNSVPTILMLMQDRLYSQGGLKAEGIFRINPENSKEEHVRNQLNSGIVPDDIDV 180
Query: 180 HCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLMAD 239
HCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEE ++LVKQLKPTE ALL+WA+DLMAD
Sbjct: 181 HCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEESIELVKQLKPTESALLSWAIDLMAD 240
Query: 240 VVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLSEREEATTA 299
VV+EEE NKM+ARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLI+KTL EREE T
Sbjct: 241 VVQEEEFNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATG 300
Query: 300 GYXXXXXXXXXXXXEDEYDSQLEMYT---------------------------SAELRGS 332
GY EDEYDSQ E T S+ELR +
Sbjct: 301 GYSPMSFRTSFRRSEDEYDSQRETATGGYSPMSFRSSYRPSEDEYDSQREIDASSELRRT 360
Query: 333 QSDCDDHVXXXXXXXXXXXXXXXXXXXXXCFLKQLNENKQGGFAEEP--------ARSTC 384
+SD DDH CFLK+L+E+ + F+EEP + C
Sbjct: 361 KSDFDDHA-HYRNSSQEELEAESLSEIEDCFLKKLDEHTK-EFSEEPESYLQEYVSSKNC 418
Query: 385 SGYNLESAVSFTDAKPDNSCSSSYEDDXXXXXXXXXXXXXXXXXXXXXTYCTNDVEMMDK 444
Y++E AV TD++ SC S + T DVEM+DK
Sbjct: 419 CDYSVEPAVPITDSEIVKSCLSFDREKFNADTTIPLRLGWTD---------TEDVEMIDK 469
Query: 445 FADCVSLVPLFASS 458
F D VS VP SS
Sbjct: 470 FTDSVSPVPRLTSS 483
>Medtr8g026680.1 | Rac GTPase activating protein | HC |
chr8:9249397-9245785 | 20130731
Length = 492
Score = 355 bits (911), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 171/266 (64%), Positives = 203/266 (76%), Gaps = 5/266 (1%)
Query: 31 QNQGSPAAFLLAALKKSMVACSVDSPDDVISAVHPMEIGWPTNVKHVTHVTFDRFNGFLG 90
QNQ + ++AALKKS+V CSV+ D V ++I WPT V+HV+HVTFDRFNGFLG
Sbjct: 79 QNQFAILDIVMAALKKSIVTCSVERED-----VSSLDISWPTEVRHVSHVTFDRFNGFLG 133
Query: 91 LPLELEVHXXXXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEG 150
LP E + MQCSYD +GNSVPTILL MQ++LYS+GGL AEG
Sbjct: 134 LPSEFQPEVPTRVPSASVKVFGVSAKSMQCSYDDRGNSVPTILLRMQKQLYSEGGLKAEG 193
Query: 151 IFRINPENGQEEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECN 210
IFRI EN QE +RDQLN+GVVP IDVHCL+GLIKAWFRELP+GVLD L+PEQV++CN
Sbjct: 194 IFRITAENSQEAFVRDQLNKGVVPHGIDVHCLSGLIKAWFRELPTGVLDSLTPEQVMQCN 253
Query: 211 TEEEFVQLVKQLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLT 270
TE++ LVK L TE ALL+WA++LMADVVE E+ NKM+ARN+AMVFAPNMTQM+DPLT
Sbjct: 254 TEDDCTNLVKLLPSTEAALLDWAINLMADVVENEQFNKMNARNVAMVFAPNMTQMADPLT 313
Query: 271 ALMHAVQVMNLLKTLILKTLSEREEA 296
AL+HAVQVMN LKTLILK L EREE+
Sbjct: 314 ALIHAVQVMNFLKTLILKMLREREES 339
>Medtr7g104900.1 | PAK-box/P21-Rho-binding domain Rho GTPase
activating protein | HC | chr7:42531591-42525668 |
20130731
Length = 477
Score = 338 bits (867), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 164/260 (63%), Positives = 198/260 (76%), Gaps = 4/260 (1%)
Query: 39 FLLAALKKSMVACSVDSPDDVISAVHPMEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVH 98
L+A +KS++ C+ ++ ++ S+ MEIGWP+NV+HV HVTFDRF+GFLGLP+E E
Sbjct: 74 LLIATFRKSLIGCT-NTGSELSSS---MEIGWPSNVRHVAHVTFDRFHGFLGLPVEFEPE 129
Query: 99 XXXXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPEN 158
MQ S+D++GNSVPTILLLMQ LY+QGGL AEGIFRIN EN
Sbjct: 130 VPTRPPSASTSVFGVSTESMQLSFDARGNSVPTILLLMQRHLYAQGGLQAEGIFRINAEN 189
Query: 159 GQEEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQL 218
QEE +R+QLNRGVVP+ IDVHCLAGLIKAWFRELP+G+LD LSPEQV++ TEEE QL
Sbjct: 190 SQEEFVREQLNRGVVPNGIDVHCLAGLIKAWFRELPTGILDPLSPEQVMQSQTEEECAQL 249
Query: 219 VKQLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQV 278
V+ L TE ALL+WA++LMADV + E NKM+ARNIAMVFAPNMT M DPLTALM+AVQV
Sbjct: 250 VRLLPATESALLDWAVNLMADVAQMEHLNKMNARNIAMVFAPNMTHMVDPLTALMYAVQV 309
Query: 279 MNLLKTLILKTLSEREEATT 298
MN LKTL+ TL EREE+ T
Sbjct: 310 MNFLKTLVAMTLKEREESIT 329
>Medtr4g052850.1 | PAK-box/P21-Rho-binding domain Rho GTPase
activating protein | HC | chr4:19175348-19178049 |
20130731
Length = 363
Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 162/259 (62%), Positives = 194/259 (74%), Gaps = 8/259 (3%)
Query: 38 AFLLAALKKSMVACSVDSPDDVISAVHPMEIGWPTNVKHVTHVTFDRFNGFLGLPLELEV 97
A L+ +KS+V+C+ D+ MEIG PTNV+H+ HVTFDRFNGFLGLPLEL
Sbjct: 72 AILVTLFRKSLVSCASDAS--------AMEIGHPTNVRHLAHVTFDRFNGFLGLPLELVP 123
Query: 98 HXXXXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPE 157
M+ SYD +GN VPTILLL+QE LY+QGGL AEGIFRIN +
Sbjct: 124 QVPTTPPSASATVFGVSTESMKLSYDRRGNIVPTILLLIQEHLYAQGGLQAEGIFRINAD 183
Query: 158 NGQEEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQ 217
N QEE+LRDQLN+GVVP++IDVHCLAGLIKAWFRELP GVLD LSPEQV+ C TEE+ +
Sbjct: 184 NRQEEYLRDQLNKGVVPEDIDVHCLAGLIKAWFRELPRGVLDSLSPEQVMTCQTEEDCAE 243
Query: 218 LVKQLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQ 277
L+ QL TE +LLNW ++LMADVV+EE NKM+ARNIAMVFAPNMT+M+DPLTA M+AVQ
Sbjct: 244 LMSQLPHTEASLLNWTINLMADVVQEEHLNKMNARNIAMVFAPNMTRMADPLTAFMYAVQ 303
Query: 278 VMNLLKTLILKTLSEREEA 296
VMN LKTL+ TL ER ++
Sbjct: 304 VMNFLKTLVSMTLKERNDS 322
>Medtr2g086580.1 | PAK-box/P21-Rho-binding domain Rho GTPase
activating protein | HC | chr2:36405412-36408662 |
20130731
Length = 451
Score = 321 bits (823), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 159/258 (61%), Positives = 189/258 (73%), Gaps = 4/258 (1%)
Query: 39 FLLAALKKSMVACSVDSPDDVISAVHPMEIGWPTNVKHVTHVTFDRFNGFLGLPLELEVH 98
L+ +KS+ D+ + M+I PTNV+HV HVTFDRFNGFLGLP E E
Sbjct: 50 LLVTLFRKSLFPFKSSGNKDLCN----MDISPPTNVRHVAHVTFDRFNGFLGLPDEFEPD 105
Query: 99 XXXXXXXXXXXXXXXXXXXMQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPEN 158
MQ SYDS+GNSVPTILLLMQ LY Q GL EGIFRIN +N
Sbjct: 106 FPRRPPSASATVFGVSTESMQLSYDSRGNSVPTILLLMQRHLYVQEGLQVEGIFRINADN 165
Query: 159 GQEEHLRDQLNRGVVPDNIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQL 218
QEEH+R+QLN G+VP++IDVHCLAGLIKAWFRELPSGVLD LS EQV++C TEE+ ++L
Sbjct: 166 SQEEHVRNQLNMGLVPEDIDVHCLAGLIKAWFRELPSGVLDSLSQEQVMQCQTEEDCIEL 225
Query: 219 VKQLKPTELALLNWALDLMADVVEEEEHNKMDARNIAMVFAPNMTQMSDPLTALMHAVQV 278
V+ L E ALL+WA++LMADVVE E NKM+ARNIAMVFAPNMTQM+DP TALM+AVQV
Sbjct: 226 VRHLPHAEAALLDWAINLMADVVEHENLNKMNARNIAMVFAPNMTQMADPFTALMYAVQV 285
Query: 279 MNLLKTLILKTLSEREEA 296
MN LKTLIL+TL ER+++
Sbjct: 286 MNFLKTLILRTLRERKDS 303
>Medtr7g081615.1 | PAK-box/P21-Rho-binding domain Rho GTPase
activating protein | HC | chr7:31295617-31296762 |
20130731
Length = 182
Score = 249 bits (637), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 121/147 (82%), Positives = 132/147 (89%), Gaps = 2/147 (1%)
Query: 118 MQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNI 177
MQCSYDSKGNSVP ILLLMQERLYSQG +GIF IN ENG+EEHLR+Q N G+VP +I
Sbjct: 27 MQCSYDSKGNSVPAILLLMQERLYSQG--RTKGIFCINLENGEEEHLREQFNSGIVPIDI 84
Query: 178 DVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLM 237
DVHCLAGLIKAWFRELPSGVLDGLSPE+VLECNTEEEFV+LVK LKP E ALLNWA+DLM
Sbjct: 85 DVHCLAGLIKAWFRELPSGVLDGLSPEEVLECNTEEEFVELVKLLKPVESALLNWAVDLM 144
Query: 238 ADVVEEEEHNKMDARNIAMVFAPNMTQ 264
ADVV EEE+NK++A NIAMVFAPNMTQ
Sbjct: 145 ADVVVEEEYNKLNAINIAMVFAPNMTQ 171
>Medtr5g064420.1 | PAK-box/P21-Rho-binding domain Rho GTPase
activating protein | HC | chr5:27034836-27036920 |
20130731
Length = 238
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/141 (65%), Positives = 111/141 (78%), Gaps = 4/141 (2%)
Query: 118 MQCSYDSKGNSVPTILLLMQERLYSQGGLMAEGIFRINPENGQEEHLRDQLNRGVVPDNI 177
M+ SYD +GN VPTILLLMQE LY+QGGL AEGIFRIN +N QEE+ RD+LN+GVVP++I
Sbjct: 59 MKLSYDRRGNIVPTILLLMQEHLYAQGGLQAEGIFRINADNRQEEYHRDELNKGVVPEDI 118
Query: 178 DVHCLAGLIKAWFRELPSGVLDGLSPEQVLECNTEEEFVQLVKQLKPTELALLNWALDLM 237
DVHCL GLIK + GVLD LSPEQV++C TEE+ +L L TE +LLNW ++LM
Sbjct: 119 DVHCLTGLIKGATK----GVLDSLSPEQVMQCQTEEDCAELASHLPHTEASLLNWTINLM 174
Query: 238 ADVVEEEEHNKMDARNIAMVF 258
ADVV+EE NKM+A NIAMVF
Sbjct: 175 ADVVQEEHLNKMNACNIAMVF 195