Miyakogusa Predicted Gene
- Lj1g3v4764160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4764160.1 Non Characterized Hit- tr|G8A1B1|G8A1B1_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,82.54,0,PORR,Plant organelle RNA recognition domain;
SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NU,CUFF.33173.1
(411 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g107280.1 | plant organelle RNA recognition domain protein... 640 0.0
Medtr8g089370.2 | plant organelle RNA recognition domain protein... 262 4e-70
Medtr8g089370.1 | plant organelle RNA recognition domain protein... 262 4e-70
Medtr4g053720.1 | plant organelle RNA recognition domain protein... 200 3e-51
Medtr7g018630.1 | plant organelle RNA recognition domain protein... 197 2e-50
Medtr6g043850.1 | plant organelle RNA recognition domain protein... 196 5e-50
Medtr1g072550.1 | plant organelle RNA recognition domain protein... 176 5e-44
Medtr1g072550.2 | plant organelle RNA recognition domain protein... 176 5e-44
Medtr1g032380.1 | plant organelle RNA recognition domain protein... 171 1e-42
Medtr1g032040.1 | plant organelle RNA recognition domain protein... 171 1e-42
Medtr7g088530.1 | plant organelle RNA recognition domain protein... 152 7e-37
Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family p... 139 3e-33
Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family p... 139 4e-33
Medtr1g019170.4 | plant organelle RNA recognition domain protein... 139 5e-33
Medtr1g019170.3 | plant organelle RNA recognition domain protein... 139 5e-33
Medtr1g019170.1 | plant organelle RNA recognition domain protein... 139 5e-33
Medtr1g019170.2 | plant organelle RNA recognition domain protein... 139 5e-33
Medtr7g117270.1 | plant organelle RNA recognition domain protein... 137 1e-32
Medtr3g030020.1 | plant organelle RNA recognition domain protein... 136 4e-32
Medtr1g098960.1 | plant organelle RNA recognition domain protein... 135 6e-32
Medtr3g105530.1 | plant organelle RNA recognition domain protein... 134 2e-31
Medtr3g063230.1 | plant organelle RNA recognition domain protein... 128 1e-29
Medtr6g033595.1 | plant organelle RNA recognition domain protein... 127 2e-29
Medtr8g102038.1 | plant organelle RNA recognition domain protein... 122 6e-28
Medtr0153s0070.2 | plant organelle RNA recognition domain protei... 115 1e-25
Medtr2g067960.1 | plant organelle RNA recognition domain protein... 114 2e-25
Medtr3g083350.1 | plant organelle RNA recognition domain protein... 110 2e-24
Medtr3g063230.2 | plant organelle RNA recognition domain protein... 108 1e-23
Medtr3g074730.1 | plant organelle RNA recognition domain protein... 107 2e-23
Medtr3g448960.1 | plant organelle RNA recognition domain protein... 105 7e-23
Medtr0153s0070.1 | plant organelle RNA recognition domain protei... 100 4e-21
>Medtr7g107280.1 | plant organelle RNA recognition domain protein |
HC | chr7:43760664-43762324 | 20130731
Length = 420
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/365 (84%), Positives = 328/365 (89%), Gaps = 2/365 (0%)
Query: 16 MKLQWRGIAKVRLKWVKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQKL 75
++ Q RGIAKVRLKWVKNRS+DHIIDKETDLKAASLLKDAI RSST FLTAK+FS WQKL
Sbjct: 18 LQFQSRGIAKVRLKWVKNRSIDHIIDKETDLKAASLLKDAIKRSSTSFLTAKTFSDWQKL 77
Query: 76 LGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERL 135
LGLTVPVLRFIRRYPTLFHEFPHPRW SLPCFRLTDTA LL SQEQS++ HEND VER
Sbjct: 78 LGLTVPVLRFIRRYPTLFHEFPHPRWNSLPCFRLTDTAQLLDSQEQSIYAVHENDIVERF 137
Query: 136 SKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVRLSKWC 195
SK LMM K+RTVP+ SLYPLK+D+GLPD+FEKTLIPK+PD+FQFVKA NGVSA+RL WC
Sbjct: 138 SKVLMMMKSRTVPIQSLYPLKFDLGLPDAFEKTLIPKYPDKFQFVKAGNGVSAIRLVDWC 197
Query: 196 EEFAVSALQKSN--ERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLP 253
+EFAVSALQKSN E + D YRDFKRGK ALVFPMRFPRGYG QKKVRFWMDEF KLP
Sbjct: 198 DEFAVSALQKSNQCESENASDQYRDFKRGKTALVFPMRFPRGYGGQKKVRFWMDEFQKLP 257
Query: 254 YISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIF 313
YISPYADSSKIDP SDLMEKRVVGVLHE LSL +HKKTKRNYLRSLREELNLPHKFTRIF
Sbjct: 258 YISPYADSSKIDPKSDLMEKRVVGVLHEFLSLCLHKKTKRNYLRSLREELNLPHKFTRIF 317
Query: 314 TRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGDGSIPK 373
TRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPL RHRDKFYHVM+TGLLYRGDGS+
Sbjct: 318 TRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLARHRDKFYHVMRTGLLYRGDGSLKL 377
Query: 374 PEGGA 378
E +
Sbjct: 378 GEDAS 382
>Medtr8g089370.2 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 219/363 (60%), Gaps = 9/363 (2%)
Query: 15 WMKLQWRGIAKVRLKWVKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQK 74
++ LQ + ++LKWVK+R++D ++ + DLKAA +L I SS ++ S +
Sbjct: 22 YIYLQKFSLVNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRG 81
Query: 75 LLGL--TVPVLRFIRRYPTLFHE-FPHPRWPS-LPCFRLTDTALLLHSQEQSLHNHHEND 130
LGL + + FIRRYP +F E + S +PCF L+ A+ +H +E + + +
Sbjct: 82 QLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREEVDILRENSLE 141
Query: 131 TVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVR 190
+RL K LM+T+ +PL ++ LKWD+GLP ++ + + P++F FV+ P+ ++
Sbjct: 142 FRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVGLK 201
Query: 191 LSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFH 250
L W ++ AVS L+K+ D K G L FP+ F RG+G ++K W+ E+
Sbjct: 202 LLFWDDKLAVSELEKNASLQ---QQVEDIKNG--TLAFPVSFTRGFGMKRKSMEWLREWQ 256
Query: 251 KLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFT 310
KLPY SPYAD+S +D +D+ EKRVVGV HELL LT+HK+T+R + +LR L LP KFT
Sbjct: 257 KLPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFT 316
Query: 311 RIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGDGS 370
+ F R+PGIFY+S K T TV LRE Y G+LV HPLV+ R++ +++K GLL R G
Sbjct: 317 KAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLLKKGLLDRSRGV 376
Query: 371 IPK 373
K
Sbjct: 377 YKK 379
>Medtr8g089370.1 | plant organelle RNA recognition domain protein |
HC | chr8:37138838-37141109 | 20130731
Length = 389
Score = 262 bits (670), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 219/363 (60%), Gaps = 9/363 (2%)
Query: 15 WMKLQWRGIAKVRLKWVKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQK 74
++ LQ + ++LKWVK+R++D ++ + DLKAA +L I SS ++ S +
Sbjct: 22 YIYLQKFSLVNIKLKWVKDRTMDSVVVGKRDLKAAGILVSVIYSSSEDYVPIYRLSRHRG 81
Query: 75 LLGL--TVPVLRFIRRYPTLFHE-FPHPRWPS-LPCFRLTDTALLLHSQEQSLHNHHEND 130
LGL + + FIRRYP +F E + S +PCF L+ A+ +H +E + + +
Sbjct: 82 QLGLPDEIKLAVFIRRYPNVFVESYSLDSGGSPVPCFGLSSEAMKIHREEVDILRENSLE 141
Query: 131 TVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVR 190
+RL K LM+T+ +PL ++ LKWD+GLP ++ + + P++F FV+ P+ ++
Sbjct: 142 FRDRLCKLLMLTRDWMLPLQTIDQLKWDLGLPYDYQDSFVMNHPEKFSFVRLPDVRVGLK 201
Query: 191 LSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFH 250
L W ++ AVS L+K+ D K G L FP+ F RG+G ++K W+ E+
Sbjct: 202 LLFWDDKLAVSELEKNASLQ---QQVEDIKNG--TLAFPVSFTRGFGMKRKSMEWLREWQ 256
Query: 251 KLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFT 310
KLPY SPYAD+S +D +D+ EKRVVGV HELL LT+HK+T+R + +LR L LP KFT
Sbjct: 257 KLPYTSPYADASHLDIRTDVSEKRVVGVFHELLHLTLHKQTERKNVSNLRRPLALPQKFT 316
Query: 311 RIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGDGS 370
+ F R+PGIFY+S K T TV LRE Y G+LV HPLV+ R++ +++K GLL R G
Sbjct: 317 KAFERHPGIFYISKKNDTQTVVLREAYNGGELVQKHPLVKIREELANLLKKGLLDRSRGV 376
Query: 371 IPK 373
K
Sbjct: 377 YKK 379
>Medtr4g053720.1 | plant organelle RNA recognition domain protein |
HC | chr4:19386178-19384121 | 20130731
Length = 357
Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/347 (35%), Positives = 186/347 (53%), Gaps = 15/347 (4%)
Query: 21 RGIAKVRLKWVKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQKLLGLTV 80
R R+KWV++ LD + KE +LK LK+ I S + L+ + S + L L +
Sbjct: 15 RTFVNARVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNASMLKASLNLPM 74
Query: 81 PVLRFIRRYPTLFHEF-PHPRWPSLPCFRLTDTALLLHSQEQSLHNHHEN--DTVERLSK 137
++ + +Y +F +F P P P P +LT AL LH +E +HN N D +RL++
Sbjct: 75 ITIKLVEKYHHVFMQFQPSPGLP--PRIKLTAQALALHKEEMEVHNSRTNQEDAAQRLAR 132
Query: 138 FLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVS-----AVRLS 192
LM+ +P+ + LKWD+GLP + TL+ +PD F + +S A+ L
Sbjct: 133 LLMLAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLSGKEVLALELV 192
Query: 193 KWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKL 252
W +E +VS L+K R G + D +R + FPM P+ + +K+V+ W++ + L
Sbjct: 193 SWRKELSVSELEK---RVMGFNYDADKRRHD--IQFPMFLPKSFALEKRVKTWVEGWQTL 247
Query: 253 PYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRI 312
PYISPY ++ +D NSD EK V +LHELLSL + KKT+ L E L L +F +
Sbjct: 248 PYISPYENAFHLDSNSDQAEKWTVAILHELLSLLVSKKTESENLICYGECLGLGSRFKKA 307
Query: 313 FTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVM 359
+PGIFYLS K +T T LRE Y LV HP++ R + H+M
Sbjct: 308 LVHHPGIFYLSNKIRTQTAVLREAYRNEFLVKNHPVMGTRYWYIHLM 354
>Medtr7g018630.1 | plant organelle RNA recognition domain protein |
HC | chr7:6083157-6084419 | 20130731
Length = 420
Score = 197 bits (501), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 183/356 (51%), Gaps = 15/356 (4%)
Query: 12 VVPWMKLQWRGIAKVRLKWVKNRSLDHI--IDKETDLKAASLLKDAINRSSTGFLTAKSF 69
+P+ +Q V +KW K+ D I I LK LK+ I + G + S
Sbjct: 33 CLPFSHIQRFNYVNVYMKWKKDSYYDSIEHIHHSIQLKPVIALKNCIAQDPNGCIPISSV 92
Query: 70 SGWQKLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHEN 129
S L + + V RF+R+YP++F EF P++ + P FRLT A + E+ ++
Sbjct: 93 SKRGLQLDVPMKVARFLRQYPSIFEEFTGPKY-NHPWFRLTPEAAEIDRDEKRVYEESRE 151
Query: 130 DTVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAV 189
+ RL K ++MTK +PL + ++W +GLP F + D F+FV+ +G+ +
Sbjct: 152 ELRSRLKKMILMTKENVLPLKIIQGMQWYLGLPHDFLQHHEQNLDDSFRFVEMEDGLKGL 211
Query: 190 RLSKWCEEFAV---SALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWM 246
+ ++V +A++K DG A+ FP + + K+ W+
Sbjct: 212 AIESRERVYSVMEENAMKKGMYYDGSQ---------TEAIEFPFFPSKALRMKTKIENWL 262
Query: 247 DEFHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLP 306
EF KLPYISPY D S +DPNSD+ EKR++GVLHELLSL + +R L L++ P
Sbjct: 263 HEFQKLPYISPYDDFSNLDPNSDIAEKRLIGVLHELLSLFIDHSAERRKLLCLKKYFGFP 322
Query: 307 HKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTG 362
K R F R+P +FY+S++ KT TV L+E Y ++ HPL+ R ++ +MK
Sbjct: 323 QKVHRAFERHPHMFYMSMRNKTCTVILKEAYCNELAIENHPLLSVRKRYIKLMKES 378
>Medtr6g043850.1 | plant organelle RNA recognition domain protein |
LC | chr6:15115306-15109090 | 20130731
Length = 664
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 195/350 (55%), Gaps = 17/350 (4%)
Query: 31 VKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQKLLGLTVPVLRFIRRYP 90
V++R LDH +++E +LK L IN T L S + L L + FIR+YP
Sbjct: 31 VRDRGLDHAVEREKNLKPLLTLLSLINNEPTKSLPI-SIIKQSRSLNLPFRPIEFIRKYP 89
Query: 91 TLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSL--HNHHENDTVERLSKFLMMTKTRTVP 148
++F EF + P +LT A+ L++ E+ L + + D R+ K LM+ K +P
Sbjct: 90 SVFEEFYNNGCTFEPHVKLTAKAIDLNADEKFLVASDVFKKDVAVRVLKLLMIAKGNKIP 149
Query: 149 LVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVRLSKWCEEFAVSALQKSNE 208
L + LKWD+GLPD + K++IP+FPD F+ V N + + L W ++ +VS L+K
Sbjct: 150 LSVVDGLKWDLGLPDDYVKSVIPEFPDHFRVVGVDNN-AVLELVCWSKKHSVSFLEKK-- 206
Query: 209 RDGGDDGYRDFKRGKA-ALVFPMRFPRGYGAQKKVRFWMDEFHKLPYISPYADSSKIDPN 267
Y D +G+ L FP++F G+ KK W+ E++ L Y+SPY + + +
Sbjct: 207 -------YGDKAKGQGKELGFPVQFSTGFEMDKKYEKWVKEWNGLRYVSPYENGVNLSGS 259
Query: 268 SDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCK 327
S+ +K VVGVLHE+L+L + KKT+++ + + E L L +F R+ ++PGIFY+S K +
Sbjct: 260 SEESDKWVVGVLHEILNLLVSKKTEKDNVLMIGEWLGLASRFKRVILQHPGIFYVSSKNR 319
Query: 328 TTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGDGSIPKPEGG 377
TV LR+GY RG LV+ +P + R ++ H+M T + D K E G
Sbjct: 320 MYTVVLRDGYKRGLLVEDNPAMEFRRRYIHLMNT---VKEDSKNDKSEKG 366
>Medtr1g072550.1 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32198282 | 20130731
Length = 393
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 12/353 (3%)
Query: 21 RGIAKVRLKWVKNRSLDHIIDKETDLK-AASLLKDAINRSSTGFLTAKSFSGWQKLLGLT 79
R I+ +++ W K++SLD I+++ K A ++K+ +N + + ++ + L
Sbjct: 26 RLISSLKVVWRKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQ-VIPLRYLEKRRQRMRLK 84
Query: 80 VPVLRFIRRYPTLF---HEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLS 136
V + F+ + P LF ++ P+ + R++D L +E+ ++ +E V +L
Sbjct: 85 VKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLC 144
Query: 137 KFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAP-NGVSAVRLSKWC 195
K LMM+K + V L +K + G P+ F L+P++P+ F+ P G S + L W
Sbjct: 145 KLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWN 204
Query: 196 EEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYI 255
EFA S +++ E + G R F ++ P G+ +K++R W+ ++ +L Y+
Sbjct: 205 PEFAKSVIERRAEEESRATGIR------VRPSFNVKLPPGFVLKKEMREWIRDWMELDYV 258
Query: 256 SPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTR 315
SPY D S ++ S MEKR VGV HELLSL+++K+ L +E + F+ FTR
Sbjct: 259 SPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTR 318
Query: 316 YPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGD 368
+ GIFY+SLK T LRE Y KL+D PL++ +D+F ++K G R +
Sbjct: 319 HSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAELLKEGWRLRAE 371
>Medtr1g072550.2 | plant organelle RNA recognition domain protein |
HC | chr1:32201119-32199304 | 20130731
Length = 393
Score = 176 bits (445), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 12/353 (3%)
Query: 21 RGIAKVRLKWVKNRSLDHIIDKETDLK-AASLLKDAINRSSTGFLTAKSFSGWQKLLGLT 79
R I+ +++ W K++SLD I+++ K A ++K+ +N + + ++ + L
Sbjct: 26 RLISSLKVVWRKDQSLDQAIEQDKRFKQCARVVKEVLNEPGQ-VIPLRYLEKRRQRMRLK 84
Query: 80 VPVLRFIRRYPTLF---HEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLS 136
V + F+ + P LF ++ P+ + R++D L +E+ ++ +E V +L
Sbjct: 85 VKIDTFLNQNPFLFDVYYDRIKPKTEPVKFLRVSDHLLQFLQEEKRIYKENEPLIVSKLC 144
Query: 137 KFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAP-NGVSAVRLSKWC 195
K LMM+K + V L +K + G P+ F L+P++P+ F+ P G S + L W
Sbjct: 145 KLLMMSKDKIVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWN 204
Query: 196 EEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYI 255
EFA S +++ E + G R F ++ P G+ +K++R W+ ++ +L Y+
Sbjct: 205 PEFAKSVIERRAEEESRATGIR------VRPSFNVKLPPGFVLKKEMREWIRDWMELDYV 258
Query: 256 SPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTR 315
SPY D S ++ S MEKR VGV HELLSL+++K+ L +E + F+ FTR
Sbjct: 259 SPYEDVSHLEQASREMEKRSVGVFHELLSLSLYKRVPVPILGKFCDEYRFSNAFSSAFTR 318
Query: 316 YPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGD 368
+ GIFY+SLK T LRE Y KL+D PL++ +D+F ++K G R +
Sbjct: 319 HSGIFYMSLKGGIETAMLREAYDGDKLIDIDPLLQIKDRFAELLKEGWRLRAE 371
>Medtr1g032380.1 | plant organelle RNA recognition domain protein |
HC | chr1:11495605-11496780 | 20130731
Length = 391
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 183/353 (51%), Gaps = 12/353 (3%)
Query: 21 RGIAKVRLKWVKNRSLDHIIDKETDLKAA-SLLKDAINRSSTGFLTAKSFSGWQKLLGLT 79
R I+ +++ W K+ SLD I+++ K ++K+ +N + + ++ + L
Sbjct: 26 RSISSLKVVWRKDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQ-VIPLRYLEKRRQRMRLK 84
Query: 80 VPVLRFIRRYPTLF---HEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLS 136
V + F+ + P LF ++ P+ + R++D L +E+ ++ +E V +L
Sbjct: 85 VKIDTFLNQNPFLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLC 144
Query: 137 KFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAP-NGVSAVRLSKWC 195
K LMM+K + V L +K + G P+ F L+P++P+ F+ P G S + L W
Sbjct: 145 KLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWN 204
Query: 196 EEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYI 255
EFA S ++K E + G R F ++ P G+ +K++R W+ ++ +L Y+
Sbjct: 205 PEFAKSVVEKRAEEESSATGIR------VRPSFNVKLPPGFVLKKEMREWIRDWMELDYV 258
Query: 256 SPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTR 315
SPY D S + +S MEKR VGV HELLSL+++K+ L +E + F+ FTR
Sbjct: 259 SPYEDVSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTR 318
Query: 316 YPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGD 368
+ GIFYLSLK T LRE Y KL+ PL++ +D+F ++ G R +
Sbjct: 319 HSGIFYLSLKGGIETAMLREAYEGDKLIHIDPLLQIKDRFAELLNEGWRLRAE 371
>Medtr1g032040.1 | plant organelle RNA recognition domain protein |
HC | chr1:11336962-11338761 | 20130731
Length = 391
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 183/353 (51%), Gaps = 12/353 (3%)
Query: 21 RGIAKVRLKWVKNRSLDHIIDKETDLKAA-SLLKDAINRSSTGFLTAKSFSGWQKLLGLT 79
R I+ +++ W K+ SLD I+++ K ++K+ +N + + ++ + L
Sbjct: 26 RSISSLKVVWRKDPSLDQAIEQDKRFKQCFRVVKEVLNEPGQ-VIPLRYLEKRRQRMRLK 84
Query: 80 VPVLRFIRRYPTLF---HEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLS 136
V + F+ + P LF ++ P+ + R++D L +E+ ++ +E V +L
Sbjct: 85 VKIDTFLNQNPFLFDVYYDRIKPKTKPVKFLRVSDHLLQFLEEEKRIYKENEPLIVSKLC 144
Query: 137 KFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAP-NGVSAVRLSKWC 195
K LMM+K + V L +K + G P+ F L+P++P+ F+ P G S + L W
Sbjct: 145 KLLMMSKDKVVSADKLLHVKREFGFPNDFLVDLVPRYPEYFRLTGLPGEGKSFLELVNWN 204
Query: 196 EEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYI 255
EFA S ++K E + G R F ++ P G+ +K++R W+ ++ +L Y+
Sbjct: 205 PEFAKSVVEKRAEEESSATGIR------VRPSFNVKLPPGFVLKKEMREWIRDWMELDYV 258
Query: 256 SPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTR 315
SPY D S + +S MEKR VGV HELLSL+++K+ L +E + F+ FTR
Sbjct: 259 SPYEDVSHFEQSSREMEKRSVGVFHELLSLSLYKRIPVPILGKFCDEYRFSNAFSSAFTR 318
Query: 316 YPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGD 368
+ GIFYLSLK T LRE Y KL+ PL++ +D+F ++ G R +
Sbjct: 319 HSGIFYLSLKGGIETAMLREAYEGDKLIHIDPLLQIKDRFAELLNEGWRLRAE 371
>Medtr7g088530.1 | plant organelle RNA recognition domain protein |
HC | chr7:34489084-34490337 | 20130731
Length = 417
Score = 152 bits (383), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 160/306 (52%), Gaps = 8/306 (2%)
Query: 57 NRSSTGFLTAKSFSGWQKLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLL 116
NR F++ + S W+ + GL V V F+++YP +F+ F HP ++ C R+T L
Sbjct: 74 NRKRGSFVSLQLMSRWKNITGLNVTVTSFLQKYPHVFYLFVHPFRRNMCC-RMTKKMKEL 132
Query: 117 HSQEQSLHNHHENDTVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQ 176
E+ + HE + V+R+ K LMM+ T+ L +L ++ ++GLP F ++++ ++ D+
Sbjct: 133 ILLEEVVVRQHEVEVVKRVKKLLMMSVNGTLHLHALRLIRRELGLPCDFRESILGRYSDE 192
Query: 177 FQFVKAPNGVSAVRLSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGY 236
F+ V + V L W +E ++ +++ ER+ + +F+ FP+ FP G+
Sbjct: 193 FRLV----DLEIVALVGWDDELGMARVEEWREREYREKWLSEFE---TKFAFPINFPTGF 245
Query: 237 GAQKKVRFWMDEFHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYL 296
++ R + + +L Y PY + EKR V VLHELLSLT+ K + + L
Sbjct: 246 KIERGFREKLKGWQRLSYTKPYERKNVKCGGVQRYEKRAVAVLHELLSLTVEKMVEVDQL 305
Query: 297 RSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFY 356
R + ++ + R+PGIFY+S K TV LRE Y +G L++P+P+ R
Sbjct: 306 AHFRRDFDIEVNVRELLLRHPGIFYISTKGNAQTVFLREAYEKGGLIEPNPVYEVRRNML 365
Query: 357 HVMKTG 362
++ G
Sbjct: 366 ELVLLG 371
>Medtr3g029990.1 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9462535 | 20130731
Length = 630
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 24/292 (8%)
Query: 74 KLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVE 133
K L L L +I +YP+ F +F LT + L +EQSL + E+ V
Sbjct: 69 KTLDLQGKALNWISKYPSCF-QFHQDH------VLLTKRMMELVHEEQSLKDSLESVFVP 121
Query: 134 RLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA--VRL 191
RL+K LM++ + ++ + +K +G PD + ++ K+PD F+ S+ V L
Sbjct: 122 RLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVEL 181
Query: 192 SKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHK 251
KW +FAVS ++ ++G + + + P + + +K R EF
Sbjct: 182 MKWNPDFAVSEVEALAMKNGVEVNF--------SCCLPSSWVKSL---EKFR----EFEL 226
Query: 252 LPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTR 311
+PY+SPY+D + S MEKR VG++HELLSLT+ KK L + E LP K
Sbjct: 227 VPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNV 286
Query: 312 IFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
+ ++PGIFY+S K + TV LREGY +LVD PLV ++KF +M+ GL
Sbjct: 287 LLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGL 338
>Medtr3g029990.2 | ubiquitin carboxyl-terminal hydrolase family
protein | HC | chr3:9456270-9464177 | 20130731
Length = 626
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 150/292 (51%), Gaps = 24/292 (8%)
Query: 74 KLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVE 133
K L L L +I +YP+ F +F LT + L +EQSL + E+ V
Sbjct: 69 KTLDLQGKALNWISKYPSCF-QFHQDH------VLLTKRMMELVHEEQSLKDSLESVFVP 121
Query: 134 RLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA--VRL 191
RL+K LM++ + ++ + +K +G PD + ++ K+PD F+ S+ V L
Sbjct: 122 RLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVEL 181
Query: 192 SKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHK 251
KW +FAVS ++ ++G + + + P + + +K R EF
Sbjct: 182 MKWNPDFAVSEVEALAMKNGVEVNF--------SCCLPSSWVKSL---EKFR----EFEL 226
Query: 252 LPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTR 311
+PY+SPY+D + S MEKR VG++HELLSLT+ KK L + E LP K
Sbjct: 227 VPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNV 286
Query: 312 IFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
+ ++PGIFY+S K + TV LREGY +LVD PLV ++KF +M+ GL
Sbjct: 287 LLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGL 338
>Medtr1g019170.4 | plant organelle RNA recognition domain protein |
HC | chr1:5720388-5724512 | 20130731
Length = 416
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 147/292 (50%), Gaps = 24/292 (8%)
Query: 74 KLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVE 133
K L L L +I +YP+ F +F LT + L +EQSL + E+ V
Sbjct: 69 KTLDLQGKALNWISKYPSCF-QFHQDH------VLLTKRMMELVHEEQSLKDSLESVFVP 121
Query: 134 RLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA--VRL 191
RL+K LM++ + ++ + +K +G PD + ++ K+PD F+ S+ V L
Sbjct: 122 RLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVEL 181
Query: 192 SKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHK 251
KW +FAVS ++ ++G + + + P + + EF
Sbjct: 182 MKWNPDFAVSEVEALAMKNGVEVNF--------SCCLPSSWVKSLEK-------FHEFEL 226
Query: 252 LPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTR 311
+PY+SPY+D + S MEKR VG++HELLSLT+ KK L + E LP K
Sbjct: 227 VPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNV 286
Query: 312 IFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
+ ++PGIFY+S K + TV LREGY +LVD PLV ++KF +M+ GL
Sbjct: 287 LLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGL 338
>Medtr1g019170.3 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 147/292 (50%), Gaps = 24/292 (8%)
Query: 74 KLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVE 133
K L L L +I +YP+ F +F LT + L +EQSL + E+ V
Sbjct: 69 KTLDLQGKALNWISKYPSCF-QFHQDH------VLLTKRMMELVHEEQSLKDSLESVFVP 121
Query: 134 RLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA--VRL 191
RL+K LM++ + ++ + +K +G PD + ++ K+PD F+ S+ V L
Sbjct: 122 RLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVEL 181
Query: 192 SKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHK 251
KW +FAVS ++ ++G + + + P + + EF
Sbjct: 182 MKWNPDFAVSEVEALAMKNGVEVNF--------SCCLPSSWVKSLEK-------FHEFEL 226
Query: 252 LPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTR 311
+PY+SPY+D + S MEKR VG++HELLSLT+ KK L + E LP K
Sbjct: 227 VPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNV 286
Query: 312 IFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
+ ++PGIFY+S K + TV LREGY +LVD PLV ++KF +M+ GL
Sbjct: 287 LLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGL 338
>Medtr1g019170.1 | plant organelle RNA recognition domain protein |
HC | chr1:5720173-5724512 | 20130731
Length = 416
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 147/292 (50%), Gaps = 24/292 (8%)
Query: 74 KLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVE 133
K L L L +I +YP+ F +F LT + L +EQSL + E+ V
Sbjct: 69 KTLDLQGKALNWISKYPSCF-QFHQDH------VLLTKRMMELVHEEQSLKDSLESVFVP 121
Query: 134 RLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA--VRL 191
RL+K LM++ + ++ + +K +G PD + ++ K+PD F+ S+ V L
Sbjct: 122 RLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVEL 181
Query: 192 SKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHK 251
KW +FAVS ++ ++G + + + P + + EF
Sbjct: 182 MKWNPDFAVSEVEALAMKNGVEVNF--------SCCLPSSWVKSLEK-------FHEFEL 226
Query: 252 LPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTR 311
+PY+SPY+D + S MEKR VG++HELLSLT+ KK L + E LP K
Sbjct: 227 VPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNV 286
Query: 312 IFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
+ ++PGIFY+S K + TV LREGY +LVD PLV ++KF +M+ GL
Sbjct: 287 LLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGL 338
>Medtr1g019170.2 | plant organelle RNA recognition domain protein |
HC | chr1:5720163-5724512 | 20130731
Length = 416
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 147/292 (50%), Gaps = 24/292 (8%)
Query: 74 KLLGLTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVE 133
K L L L +I +YP+ F +F LT + L +EQSL + E+ V
Sbjct: 69 KTLDLQGKALNWISKYPSCF-QFHQDH------VLLTKRMMELVHEEQSLKDSLESVFVP 121
Query: 134 RLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA--VRL 191
RL+K LM++ + ++ + +K +G PD + ++ K+PD F+ S+ V L
Sbjct: 122 RLAKLLMLSLNNCLNVMKINEIKNSLGFPDDYLIGIVAKYPDLFRIRNESGRRSSMVVEL 181
Query: 192 SKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHK 251
KW +FAVS ++ ++G + + + P + + EF
Sbjct: 182 MKWNPDFAVSEVEALAMKNGVEVNF--------SCCLPSSWVKSLEK-------FHEFEL 226
Query: 252 LPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTR 311
+PY+SPY+D + S MEKR VG++HELLSLT+ KK L + E LP K
Sbjct: 227 VPYVSPYSDPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNV 286
Query: 312 IFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
+ ++PGIFY+S K + TV LREGY +LVD PLV ++KF +M+ GL
Sbjct: 287 LLLKHPGIFYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGL 338
>Medtr7g117270.1 | plant organelle RNA recognition domain protein |
HC | chr7:48441549-48444050 | 20130731
Length = 530
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/346 (29%), Positives = 171/346 (49%), Gaps = 6/346 (1%)
Query: 28 LKWVKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQKLLGLTVP--VLRF 85
+K K D++I K+ LK ++ + T ++ + +++ LGL ++
Sbjct: 84 VKRRKELPFDNVIQKDKKLKFVLKVRKILVSKPTRVMSLQELGKYRRELGLDKKRKLIVI 143
Query: 86 IRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSKFLMMTKTR 145
+RR+P +F E SL F++T A L+ +E + N E+ V +L K LMM +
Sbjct: 144 LRRFPGVF-EIVEDGCYSLK-FKMTSEAEKLYLEELRVRNEMEDVVVTKLRKLLMMPLEK 201
Query: 146 TVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVRLSKWCEEFAVSALQK 205
+ L + L D+GLP F T+ ++P+ F+ V+ G A+ L+ W AVSA +
Sbjct: 202 RILLEKIGHLANDLGLPREFRDTICHRYPEFFKVVQTERG-PALELTHWDPHLAVSAAEL 260
Query: 206 SNERDGGDD-GYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYISPYADSSKI 264
S E + + ++ +A ++ P+G K + +F +PYISPY+D S I
Sbjct: 261 SAEENRIREVEEQNLIIDRAPKFNRVKLPKGLSLSKGEMRKIMQFRDIPYISPYSDFSMI 320
Query: 265 DPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSL 324
N+ EK GV+HE+LSLT+ K+T + REE + + R+P +FY+SL
Sbjct: 321 GLNTPEKEKHACGVIHEILSLTLEKRTLVDNFTHFREEFRFSQQLRGMLIRHPDMFYISL 380
Query: 325 KCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGDGS 370
K +V LRE Y +LVD L+ ++K ++ +G G+
Sbjct: 381 KGDRDSVFLREAYRDSQLVDKDRLLLVKEKLRSLVDIPRFPKGRGA 426
>Medtr3g030020.1 | plant organelle RNA recognition domain protein |
HC | chr3:9470357-9471627 | 20130731
Length = 373
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 145/284 (51%), Gaps = 26/284 (9%)
Query: 83 LRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSKFLMMT 142
L +I +YP+ F +F LT + L +EQSL + E+ V RL+K LM +
Sbjct: 35 LNWISKYPSCF-QFHQDH------VLLTKRMMELVHEEQSLKDSLESVFVPRLAKLLMFS 87
Query: 143 KTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA--VRLSKWCEEFAV 200
+ ++ + +K +G PD + ++ K+PD F+ +S+ V L KW +F+V
Sbjct: 88 LNNCLNVMKINEIKNSLGFPDDYLIGIVMKYPDLFRIRNESGRISSMVVELMKWNPDFSV 147
Query: 201 SALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGY-GAQKKVRFWMDEFHKLPYISPYA 259
S + ++G + F P + + +K R EF +PY+SPY+
Sbjct: 148 SEVAALAMKNG------------VEVNFSYCLPSSWVKSLEKFR----EFELVPYVSPYS 191
Query: 260 DSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTRYPGI 319
D + S MEKR VG++HELLSLT+ KK L + E LP K + ++PGI
Sbjct: 192 DPRGLVEGSKEMEKRNVGLVHELLSLTLWKKISIMKLGHFKREFFLPDKVNVLLLKHPGI 251
Query: 320 FYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
FY+S K + TV LREGY +LVD PLV ++KF +M+ GL
Sbjct: 252 FYVSNKYRIYTVLLREGYVGSQLVDKDPLVVVKEKFGEIMQEGL 295
>Medtr1g098960.1 | plant organelle RNA recognition domain protein |
HC | chr1:44599463-44600719 | 20130731
Length = 418
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 151/296 (51%), Gaps = 28/296 (9%)
Query: 80 VPVLRFIRRYPTLFHEFPHPRWPSL--PCFR-------LTDTALLLHSQEQSLHNHHEND 130
+P+L +++ TL + W S CF+ LT + L +EQSL + E+
Sbjct: 61 IPILTLQKKFKTLDLQGKALNWISKYPSCFQFHQDHVLLTKRMMKLVHEEQSLKDSLESV 120
Query: 131 TVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA-- 188
V RL+K LM++ + ++ + +K GLPD + ++ K+ D F+ S+
Sbjct: 121 FVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMV 180
Query: 189 VRLSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGY-GAQKKVRFWMD 247
V L KW +FAVS ++ ++G + F P + + +K R
Sbjct: 181 VELMKWNPDFAVSEVEALAMKNG------------VEVNFSCCLPSSWVKSLEKFR---- 224
Query: 248 EFHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPH 307
EF +PY+SPY+D ++ S MEKR +G++HELLSLT+ KK L + E LP
Sbjct: 225 EFELVPYVSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIMKLGHFKREFFLPD 284
Query: 308 KFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
K + ++ GIFY+S K + TV LREGY +LVD +PLV ++KF +M+ GL
Sbjct: 285 KVNVLLLKHHGIFYVSNKYRIYTVLLREGYVGSQLVDKNPLVAVKEKFGKIMQEGL 340
>Medtr3g105530.1 | plant organelle RNA recognition domain protein |
HC | chr3:48661486-48663294 | 20130731
Length = 431
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 159/311 (51%), Gaps = 16/311 (5%)
Query: 64 LTAKSFSGWQKLLGLTVP--VLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQ 121
+ +S S ++K + L P + F+R+ P LF E R L C LT A +L + +
Sbjct: 70 IPVRSLSHYRKQISLPKPHRISDFLRKTPKLF-ELYKDRNGVLWC-GLTQKAEVLMEEHK 127
Query: 122 SLHNHHENDTVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVK 181
+ +E+ E +++ LMM+ + V L + + D GLP F + K+P F+ VK
Sbjct: 128 RVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVK 187
Query: 182 -APNGVSAVRLSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQK 240
+ + V + L W E+A++ ++K N+ + G +L FP++FP + K
Sbjct: 188 PSLDDVEFLELVSWNSEWAITEIEKKNKMILEGVTETEHTPGLLSLPFPLKFPANF---K 244
Query: 241 KVRFWMDE----FHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYL 296
+V + E F + Y+SPYAD+ + P S +KR V V+HELLS T+ K+ ++L
Sbjct: 245 RVHSYYGEKIKMFQERTYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRLVTDHL 304
Query: 297 RSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFY 356
R EL +P K R+ ++ GIFY+S + K +V L E Y +L++ PL R+K
Sbjct: 305 THFRWELVMPQKLMRLLLKHCGIFYVSERGKRFSVFLTEAYEGSELIEKSPLFLWREKLL 364
Query: 357 HVMKTGLLYRG 367
++ YRG
Sbjct: 365 SLVG----YRG 371
>Medtr3g063230.1 | plant organelle RNA recognition domain protein |
HC | chr3:28611519-28613057 | 20130731
Length = 425
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/345 (30%), Positives = 160/345 (46%), Gaps = 25/345 (7%)
Query: 28 LKWVKNRSLD----HIIDKETDLKAASLLKDAI-----NRS-STGFLTAKSFSGWQKLLG 77
+++V +R+ D ++DK +L + D I NRS S FL S + L
Sbjct: 46 IQYVNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFL-----SNLSQRLH 100
Query: 78 LTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSK 137
L F+R++P +F+ + P P RLTD AL + QE N VERL +
Sbjct: 101 LNRGATAFLRKFPHIFNIYYEPSKLQ-PFCRLTDAALDVSRQEAEAINTSLPLVVERLVR 159
Query: 138 FLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVRLSKWCEE 197
L M+ ++TVPL +++ + ++GLPD FE+++I FQ A L K +
Sbjct: 160 ILSMSASKTVPLRAVFKVWRELGLPDDFEESVIAANSSVFQLCDADE--QNTHLLKLVGD 217
Query: 198 FAVSALQKSNERDGGDDGYRD---FKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPY 254
S + + E + +D + F R+P G K R + E+ LPY
Sbjct: 218 VPSSGFRAAVEDWRVVECCKDESSVNSMEMRYSFKQRYPPGMRLSKNFRANVKEWQSLPY 277
Query: 255 ISPYADSSKIDPNSD----LMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFT 310
+ PY S+ S MEKR V ++HE +SLT+ K + + R+ +
Sbjct: 278 MGPYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIR 337
Query: 311 RIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKF 355
+F +PGIFYLS K K TV LRE Y RG L+ P+P+ R +
Sbjct: 338 DLFLDHPGIFYLSTKGKRHTVFLREAYERGCLIHPNPVYDARRRL 382
>Medtr6g033595.1 | plant organelle RNA recognition domain protein |
HC | chr6:10945964-10948263 | 20130731
Length = 466
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 144/290 (49%), Gaps = 20/290 (6%)
Query: 82 VLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSKFLMM 141
+ FI ++ +F F HP L C RLT A+L QE+ V RL K +MM
Sbjct: 101 AIAFILKFLHVFEIFEHPVQRILFC-RLTRKAILQIEQERLALADQVERAVTRLRKMIMM 159
Query: 142 TKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA-VRLSKWCEEFAV 200
+ + L + + +GLPD FE +++ ++P+ F+ V A + + L ++ + A
Sbjct: 160 SNGLRLRLEHVRIARSALGLPDDFEYSVVLRYPEFFRLVDAKETRNKYIELVEFDPKLAK 219
Query: 201 SALQKSNERDGGDDGYRDFKRGKAA----LVFPMRFPRGYGAQKKVRFWMDEFHKLPYIS 256
A++ + ER YR+ RG A F + FP G+ K R M ++ +LPY S
Sbjct: 220 CAIEDARER-----VYRE--RGSEAEDIRFSFLIDFPPGFKISKYFRIAMWKWQRLPYWS 272
Query: 257 PYADSSKIDPNS----DLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRI 312
PY D D S MEKR V +HELLSLT+ KK + R +NLP K
Sbjct: 273 PYEDVLGYDLRSIEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFRMAMNLPKKLKEF 332
Query: 313 FTRYPGIFYLSLK---CKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVM 359
++ GIFY+S + K TV LRE Y++G+LV+P+ L R K ++
Sbjct: 333 LLQHQGIFYVSTRGNHGKLHTVFLREAYSKGELVEPNDLYLARRKLVELV 382
>Medtr8g102038.1 | plant organelle RNA recognition domain protein |
HC | chr8:42900320-42901238 | 20130731
Length = 238
Score = 122 bits (306), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 108/200 (54%), Gaps = 14/200 (7%)
Query: 97 PHPRWPSLPCFRLTDTALLLHSQEQSLHNHHEN--DTVERLSKFLMMTKTRTVPLVSLYP 154
P P P P +LT AL LH +E +HN N D +RLS+ LM+ P+ +
Sbjct: 46 PSPGLP--PRVKLTAQALALHKEEMEVHNSRTNREDAAQRLSRLLMLAGMARFPIYVIEK 103
Query: 155 LKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVS-----AVRLSKWCEEFAVSALQKSNER 209
LKWD+GLP + TL+ +PD F + +S A+ W +E +VS L+K R
Sbjct: 104 LKWDMGLPHDYVTTLLAHYPDYFDVCVVEDPLSGKEVLALEFVLWRKELSVSELEK---R 160
Query: 210 DGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYISPYADSSKIDPNSD 269
G + D +R + FPM P+ + +K+V+ W++ + LPYISPY ++ +D NSD
Sbjct: 161 VMGFNYGADNRRYD--IQFPMFLPKSFALEKRVKTWVEGWQTLPYISPYENAFHLDSNSD 218
Query: 270 LMEKRVVGVLHELLSLTMHK 289
EK V +LHELLSL + K
Sbjct: 219 QAEKWSVAILHELLSLLVSK 238
>Medtr0153s0070.2 | plant organelle RNA recognition domain protein |
HC | scaffold0153:34902-38440 | 20130731
Length = 335
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 12/277 (4%)
Query: 51 LLKDAINRSSTGFLTAKSFSGWQKLLGLTVP--VLRFIRRYPTLFHEFPHPRWPSLPCFR 108
L + + + + +S S ++K + L P + F+R+ P LF E R L C
Sbjct: 64 FLIELLEQEPEIVIPVRSLSHYRKQISLPKPHRISDFLRKTPKLF-ELYKDRNGVLWC-G 121
Query: 109 LTDTALLLHSQEQSLHNHHENDTVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKT 168
LT A +L + + + +E+ E +++ LMM+ + V L + + D GLP F
Sbjct: 122 LTQKAEVLMEEHKRVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTH 181
Query: 169 LIPKFPDQFQFVK-APNGVSAVRLSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALV 227
+ K+P F+ VK + + V + L W E+A++ ++K N+ + G +L
Sbjct: 182 WVHKYPQLFRVVKPSLDDVEFLELVSWNSEWAITEIEKKNKMIMEGVTETEHTPGLLSLP 241
Query: 228 FPMRFPRGYGAQKKVRFWMDE----FHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELL 283
FP++FP + K+V + E F + Y+SPYAD+ + P S +KR V V+HELL
Sbjct: 242 FPLKFPANF---KRVHSYYGEKIKMFQERTYLSPYADAKGLKPGSLEFDKRAVAVMHELL 298
Query: 284 SLTMHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIF 320
S T+ K+ ++L R EL +P K R+ ++ GIF
Sbjct: 299 SFTVEKRLVTDHLTHFRWELVMPQKLMRLLLKHCGIF 335
>Medtr2g067960.1 | plant organelle RNA recognition domain protein |
HC | chr2:28431693-28434356 | 20130731
Length = 431
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 137/287 (47%), Gaps = 20/287 (6%)
Query: 85 FIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSKFLMMTKT 144
FI ++P +F F H L C RLT +L QE+ TV L K +MM+
Sbjct: 69 FILKFPYVFEIFEHLVQRILFC-RLTRKTILQIEQERLALADQVGRTVTCLRKMIMMSNG 127
Query: 145 RTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA-VRLSKWCEEFAVSAL 203
+ L + + +GL D FE ++ ++P+ F+ V A + + L ++ + A A+
Sbjct: 128 LRLRLEHVRIARSALGLRDDFEYLVVLRYPEFFRLVDAKETRNKYIELVEFDPKLATCAI 187
Query: 204 QKSNERDGGDDGYRDFKRGKAA----LVFPMRFPRGYGAQKKVRFWMDEFHKLPYISPYA 259
+ + ER YR+ RG A F + F G+ K R M ++ LPY SPY
Sbjct: 188 EDARER-----VYRE--RGSEAEDIRFSFLIDFLPGFKISKYFRIAMWKWQSLPYWSPYE 240
Query: 260 DSSKIDPNS----DLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTR 315
D D S MEKR V +HELLSLT+ KK + + +NLP K +
Sbjct: 241 DVWGYDLRSPEAQKRMEKRAVATIHELLSLTVEKKITLERIAHFQMAMNLPKKLKEFLLQ 300
Query: 316 YPGIFYLSLK---CKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVM 359
+ GIFY+S + K TV LRE Y +G+LV+P+ L R K V+
Sbjct: 301 HQGIFYVSTRGNHGKLHTVFLREAYRKGELVEPNDLYLARRKLAEVV 347
>Medtr3g083350.1 | plant organelle RNA recognition domain protein |
HC | chr3:37619083-37621215 | 20130731
Length = 568
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 160/341 (46%), Gaps = 25/341 (7%)
Query: 29 KWVKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQKLLGLTVP--VLRFI 86
K V++R+LD + ++ LK + FL K S + L L P +L I
Sbjct: 55 KTVRDRTLDRHVVMRNRIRFVQKLKTLLLSKPKHFLPIKILSKCRAYLSLHKPRSLLSMI 114
Query: 87 RRYPTLFHEFPHPRWPSLP----------CFRLTDTALLLHSQEQSLHNHHENDTVERLS 136
RYP++F F P WP P C RLT A L ++E +L + +L
Sbjct: 115 HRYPSIFELFTIP-WPPTPLNATKLYPQLCVRLTPAAAALAAEELNLKSSISTVLANKLQ 173
Query: 137 KFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVRLSKWCE 196
K LM++ R + L L L D+GLP +F L PD+F+ V G A+ L W
Sbjct: 174 KLLMLSSHRRLLLAKLVHLAPDLGLPPNFRSRLCNDHPDKFKIVDTSYG-RALELVSWDT 232
Query: 197 EFAVS-ALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYI 255
A ++S+ D D FK+ +R +G ++ R ++ +F ++P +
Sbjct: 233 NLAKPLPPRESHSLDLIVDRPLKFKQ--------LRLRKGLNLKRPHRDYLLKFEEMPEV 284
Query: 256 SPYADSSKIDPNSDL-MEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFT 314
PY + ++ + EKR V+ E+L +T+ K+T ++L R+E LP+K +
Sbjct: 285 CPYNNPAESSTKESIEAEKRCCAVIREVLGMTIEKRTLIDHLTHFRKEFGLPNKLRGMIV 344
Query: 315 RYPGIFYLSLKCKTTTVTLREGY-ARGKLVDPHPLVRHRDK 354
R+P +FY SLK + +V L E + +G L++ ++ +DK
Sbjct: 345 RHPELFYTSLKGQRDSVFLVERFDEKGNLLEKDEVLALQDK 385
>Medtr3g063230.2 | plant organelle RNA recognition domain protein |
HC | chr3:28611460-28613057 | 20130731
Length = 401
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/336 (29%), Positives = 153/336 (45%), Gaps = 45/336 (13%)
Query: 28 LKWVKNRSLD----HIIDKETDLKAASLLKDAI-----NRS-STGFLTAKSFSGWQKLLG 77
+++V +R+ D ++DK +L + D I NRS S FL S + L
Sbjct: 46 IQYVNSRARDPTFEKLMDKYKNLLKVIAVHDLILANPKNRSVSVDFL-----SNLSQRLH 100
Query: 78 LTVPVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSK 137
L F+R++P +F+ + P P RLTD AL + QE N VERL +
Sbjct: 101 LNRGATAFLRKFPHIFNIYYEPSKLQ-PFCRLTDAALDVSRQEAEAINTSLPLVVERLVR 159
Query: 138 FLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSAVRLSKWC-E 196
L M+ ++TVPL +++ L D ++ L+ P F A V R+ + C +
Sbjct: 160 ILSMSASKTVPLRAVFKL-CDADEQNTHLLKLVGDVPSS-GFRAA---VEDWRVVECCKD 214
Query: 197 EFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYIS 256
E +V++++ F R+P G K R + E+ LPY+
Sbjct: 215 ESSVNSME-------------------MRYSFKQRYPPGMRLSKNFRANVKEWQSLPYMG 255
Query: 257 PYADSSKIDPNSDL----MEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRI 312
PY S+ S MEKR V ++HE +SLT+ K + + R+ + +
Sbjct: 256 PYEMVSEKKKTSKAGMMAMEKRAVSIVHEFMSLTVEKMVEVEKISQFRKWFGIDFNIRDL 315
Query: 313 FTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPL 348
F +PGIFYLS K K TV LRE Y RG L+ P+P+
Sbjct: 316 FLDHPGIFYLSTKGKRHTVFLREAYERGCLIHPNPV 351
>Medtr3g074730.1 | plant organelle RNA recognition domain protein |
HC | chr3:33769164-33767587 | 20130731
Length = 404
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/333 (27%), Positives = 155/333 (46%), Gaps = 25/333 (7%)
Query: 35 SLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQKLLGL--TVPVLRFIRRYPTL 92
+ + I+ +ET ++ + K+ ++ L + LG + + I+++P L
Sbjct: 62 AFEQIVKRETLMRFVTRSKNYLSNQPEHVLQLDDAGKLHRELGFPRGRKIAKSIQQHPPL 121
Query: 93 FHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSKFLMMTKTRTVPLVSL 152
F + H F TD L ++E+S+ E D VE++ K LMM++ + L +
Sbjct: 122 FLTYRHTDGKM--WFGFTDLMEELLAEEKSIMESMELDRVEKVRKLLMMSRFHRISLAKI 179
Query: 153 YPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNG-----VSAVRLSKWCEEFAVSALQKS- 206
+ ++ G+PD F + + K+P+ F+ V N V + L W AVSA++K
Sbjct: 180 HHVRNLFGIPDDF-RDRVEKYPNYFRIVDDKNKDDGKKVRVLELVNWDPLLAVSAIEKEF 238
Query: 207 --NERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDEFHKLPYISPYADSSKI 264
NE DD R F FP++ + + M+ + LP +SPY+D +K
Sbjct: 239 MVNE----DDAKRKF-------TFPVKHGKDLELGIEDERKMNLLNALPLVSPYSDGAKF 287
Query: 265 DPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSL 324
D + EK VG++HE LSLT+ K+ ++L +EE +L + + P FYL+
Sbjct: 288 DVWTLEAEKYRVGLIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYHMLVKQPRAFYLAG 347
Query: 325 KCKTTTVTLREGYAR-GKLVDPHPLVRHRDKFY 356
V L+EGY R G L+ P V +K Y
Sbjct: 348 TEMNWVVFLKEGYDRNGVLIHKDPQVVFNEKVY 380
>Medtr3g448960.1 | plant organelle RNA recognition domain protein |
HC | chr3:16485012-16487013 | 20130731
Length = 463
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 141/295 (47%), Gaps = 51/295 (17%)
Query: 80 VPVLRFIRRYPTLFHEFPHPRWPSL--PCFR-------LTDTALLLHSQEQSLHNHHEND 130
+P+L +++ TL + W S CF+ LT + L +EQSL + E+
Sbjct: 61 IPILTLQKKFKTLDLQGKALNWISKYPSCFQFHQDHVLLTKRMMKLVHEEQSLKDSLESV 120
Query: 131 TVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVKAPNGVSA-- 188
V RL+K LM++ + ++ + +K GLPD + ++ K+ D F+ S+
Sbjct: 121 FVLRLAKLLMLSLNNCLNVMKINEIKNSFGLPDDYLIGIVAKYSDLFRIRNESGRRSSMV 180
Query: 189 VRLSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQKKVRFWMDE 248
V L KW +FAVS ++ ++G + + + P + + + +K R E
Sbjct: 181 VELMKWNPDFAVSEVEALAMKNGVEVNF--------SCCLPSSWVK---SLEKFR----E 225
Query: 249 FHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHK 308
F +PY+SPY+D ++ S MEKR +G++HELLSLT+ KK L ++
Sbjct: 226 FELVPYVSPYSDPRRLVEGSKEMEKRNLGLVHELLSLTLWKKISIMKLGHFKK------- 278
Query: 309 FTRIFTRYPGIFYLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGL 363
G+F+ +REGY +LVD +PLV ++KF +M+ GL
Sbjct: 279 ---------GVFF---------CLIREGYVGSQLVDKNPLVAVKEKFGKIMQEGL 315
>Medtr0153s0070.1 | plant organelle RNA recognition domain protein |
HC | scaffold0153:36398-37624 | 20130731
Length = 373
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 12/237 (5%)
Query: 64 LTAKSFSGWQKLLGLTVP--VLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQ 121
+ +S S ++K + L P + F+R+ P LF E R L C LT A +L + +
Sbjct: 47 IPVRSLSHYRKQISLPKPHRISDFLRKTPKLF-ELYKDRNGVLWC-GLTQKAEVLMEEHK 104
Query: 122 SLHNHHENDTVERLSKFLMMTKTRTVPLVSLYPLKWDIGLPDSFEKTLIPKFPDQFQFVK 181
+ +E+ E +++ LMM+ + V L + + D GLP F + K+P F+ VK
Sbjct: 105 RVIEENEDKAAEYVTRLLMMSVDKRVQLDKIAHFRRDFGLPMDFRTHWVHKYPQLFRVVK 164
Query: 182 -APNGVSAVRLSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQK 240
+ + V + L W E+A++ ++K N+ + G +L FP++FP + K
Sbjct: 165 PSLDDVEFLELVSWNSEWAITEIEKKNKMIMEGVTETEHTPGLLSLPFPLKFPANF---K 221
Query: 241 KVRFWMDE----FHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKR 293
+V + E F + Y+SPYAD+ + P S +KR V V+HELLS T+ K+ KR
Sbjct: 222 RVHSYYGEKIKMFQERTYLSPYADAKGLKPGSLEFDKRAVAVMHELLSFTVEKRGKR 278