Miyakogusa Predicted Gene

Lj1g3v4763870.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4763870.1 Non Characterized Hit- tr|B8AWC4|B8AWC4_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,47.42,0.00000000000002,TRAF domain-like,TRAF-like; seg,NULL;
ZF_TRAF,Zinc finger, TRAF-type; TNF RECEPTOR ASSOCIATED
FACTOR,CUFF.33167.1
         (540 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054715.1 | TRAF-type zinc finger protein | HC | chr1:2388...   587   e-167

>Medtr1g054715.1 | TRAF-type zinc finger protein | HC |
           chr1:23886620-23891491 | 20130731
          Length = 424

 Score =  587 bits (1512), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 284/429 (66%), Positives = 344/429 (80%), Gaps = 17/429 (3%)

Query: 1   MSISSSMDLPTIDVDLGPRKIEDEREGGPLFHCDLCDTEVVHKLAQMFLPGLASACVDNT 60
           MS+ SSM+ PT+DVDL P +IE+E+EGGP+FHCDL DTEVVHKLAQMFLPGLASACVDNT
Sbjct: 1   MSVLSSMEAPTVDVDLSPARIENEKEGGPMFHCDLHDTEVVHKLAQMFLPGLASACVDNT 60

Query: 61  SGDLFKTPGLVANDLRKEMIDYLTLRSESFVAESVILEGGPDGEESDHPFDIISNFVDDF 120
           +G  F TPG VA+ LRKEMID+LTLRSESFVAE+VIL+ G DG  SDHPFDIIS+FVDDF
Sbjct: 61  TG--FNTPGSVADGLRKEMIDFLTLRSESFVAETVILDDGADGGVSDHPFDIISSFVDDF 118

Query: 121 VSLKRNLFSRVSGWLLSEKREDKIDDFVQEMEMKGFWTLDRRETIAETLLKNVDFENSFH 180
           V  KRNL S+VSGWLLS+KREDKIDDFVQEMEM GFW LDRRE +AE LLKNVDF+NSFH
Sbjct: 119 VDSKRNLLSQVSGWLLSDKREDKIDDFVQEMEMNGFWLLDRREKVAENLLKNVDFKNSFH 178

Query: 181 CSMNFNSKEELASHVTGCNFRTMICQNEGCNSRFCAGHLKKHDSTCPFKIIQCEQKCSDN 240
           CS +F +K+EL +HV  CNF+++ C NEGCN+RF A HLK HDS CPFKII CEQKC+D+
Sbjct: 179 CSASFVNKDELVAHVDNCNFKSVTCHNEGCNARFSAVHLKDHDSHCPFKIIPCEQKCTDS 238

Query: 241 IMRRDMDRHCITVCPMKLVNCPFFAVGCRSAVAQCMIEKHFSDDIRSHLWHLLKGIHKEA 300
           +MRRDMDRHCITVCPMKLVNCPF+AVGCRSA+AQCM+ KH SDD+ SHL HLLKGIHK+A
Sbjct: 239 LMRRDMDRHCITVCPMKLVNCPFYAVGCRSAIAQCMVGKHCSDDLNSHLLHLLKGIHKDA 298

Query: 301 SGEDLKRRVDQIVEASSSSQLAKARDVRSLTFVVKDIEAKLGPLEVSVVEKNNAEISPKS 360
           SG DL RRV+QIV+AS++++LA+ARD R+   +V+D+EAKLGPLEV+++EK + E   K 
Sbjct: 299 SGGDLNRRVEQIVQASTNNRLAEARDARAFKLIVRDLEAKLGPLEVNLIEKTSTETVAK- 357

Query: 361 DDDGEDSDTNTNVTEQSTQASHITNSSDTAQGSDIVNTHNAENTTKNEDSEHRRVENKSN 420
           ++D ED+ T T  + ++        SSD A+ S ++N        KNEDSE    E K  
Sbjct: 358 NEDSEDTGTETKGSTETLA------SSDKAEMSAVLN--------KNEDSEDTGTETKGR 403

Query: 421 EEKTQTSNE 429
            E   +S++
Sbjct: 404 TETLVSSDK 412