Miyakogusa Predicted Gene

Lj1g3v4763790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4763790.1 Non Characterized Hit- tr|J0XGV8|J0XGV8_LOALO
Uncharacterized protein OS=Loa loa PE=4 SV=1,32.64,2e-17,no
description,NULL; UBA,Ubiquitin-associated/translation elongation
factor EF1B, N-terminal, eukary,CUFF.33165.1
         (402 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g107390.1 | rhomboid family protein | HC | chr7:43813742-4...   640   0.0  
Medtr7g107390.2 | rhomboid family protein | HC | chr7:43813742-4...   539   e-153
Medtr4g123573.1 | rhomboid-like protein | HC | chr4:51389558-513...    72   1e-12
Medtr4g067340.1 | S54 (rhomboid) subfamily peptidase | HC | chr4...    56   5e-08

>Medtr7g107390.1 | rhomboid family protein | HC |
           chr7:43813742-43820538 | 20130731
          Length = 409

 Score =  640 bits (1651), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/409 (79%), Positives = 344/409 (84%), Gaps = 7/409 (1%)

Query: 1   MRRPRTMRPNIVSEAGVSTRVNQWWESIPFLTSAVVVVCGAIYLVCLLVGYDSFAEICFL 60
           MRRPRTMRPNIV+EAG+ TRVNQWWE+IPF TSAVV+VCGAIY VCLLVGYDSF+EICFL
Sbjct: 1   MRRPRTMRPNIVTEAGLPTRVNQWWENIPFFTSAVVIVCGAIYFVCLLVGYDSFSEICFL 60

Query: 61  PSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSN 120
           PSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSN
Sbjct: 61  PSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSN 120

Query: 121 AIFHVLIALLVTYNPFVKFDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPA 180
           AI HV IALLV YNP +   YLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPA
Sbjct: 121 AIIHVFIALLVAYNPILTNGYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPA 180

Query: 181 KWYAXXXXXXXXXXMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTXXXXXXXXXXXXXXC 240
           KWYA          MQNVSLLGHL GI+SGFAYT+GLFNFLIPGT              C
Sbjct: 181 KWYAFFLLVVFQLLMQNVSLLGHLSGIVSGFAYTFGLFNFLIPGTSFYSSIEASSWLSSC 240

Query: 241 VRRPKFIVCTGGNPSGYIPTHTSQNSTTSGLLSGNIWRNLSSLMPQREVSA--QSAEDSR 298
           VRRPKFIVCTGGNPSGYIPT+TS  STTSG+ SGNIWRNLSSLMPQREVS   QS EDSR
Sbjct: 241 VRRPKFIVCTGGNPSGYIPTNTSSYSTTSGIFSGNIWRNLSSLMPQREVSTQPQSVEDSR 300

Query: 299 FPGAGRTLGSSQGQMASGIQSNSNLQARLLEDSSPNQPSE-----GRHAVDNXXXXXXGV 353
           FPG GRTL ++QGQ ASG   +SNLQARLLED+SPN  S+      RH VDN       V
Sbjct: 301 FPGRGRTLAAAQGQNASGFHPDSNLQARLLEDNSPNHLSDPAILSTRHPVDNVATTGAAV 360

Query: 354 PHHQAAVVSEEEIKKLVAMGFDRTQVEVALAAADGDLNVAVEILMSQQG 402
           PHH+ AVVSEEEIKKL+AMGFDRTQVEVALAAADGDLNVAVEILMSQQG
Sbjct: 361 PHHEGAVVSEEEIKKLIAMGFDRTQVEVALAAADGDLNVAVEILMSQQG 409


>Medtr7g107390.2 | rhomboid family protein | HC |
           chr7:43813742-43818623 | 20130731
          Length = 358

 Score =  539 bits (1389), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/340 (80%), Positives = 290/340 (85%), Gaps = 2/340 (0%)

Query: 1   MRRPRTMRPNIVSEAGVSTRVNQWWESIPFLTSAVVVVCGAIYLVCLLVGYDSFAEICFL 60
           MRRPRTMRPNIV+EAG+ TRVNQWWE+IPF TSAVV+VCGAIY VCLLVGYDSF+EICFL
Sbjct: 1   MRRPRTMRPNIVTEAGLPTRVNQWWENIPFFTSAVVIVCGAIYFVCLLVGYDSFSEICFL 60

Query: 61  PSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSN 120
           PSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSN
Sbjct: 61  PSAVVSRFQVYRIYTAILFHGSLLHVLFNMMALVPLGSELERIMGSVRLLYVTILLATSN 120

Query: 121 AIFHVLIALLVTYNPFVKFDYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPA 180
           AI HV IALLV YNP +   YLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPA
Sbjct: 121 AIIHVFIALLVAYNPILTNGYLMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPA 180

Query: 181 KWYAXXXXXXXXXXMQNVSLLGHLCGILSGFAYTYGLFNFLIPGTXXXXXXXXXXXXXXC 240
           KWYA          MQNVSLLGHL GI+SGFAYT+GLFNFLIPGT              C
Sbjct: 181 KWYAFFLLVVFQLLMQNVSLLGHLSGIVSGFAYTFGLFNFLIPGTSFYSSIEASSWLSSC 240

Query: 241 VRRPKFIVCTGGNPSGYIPTHTSQNSTTSGLLSGNIWRNLSSLMPQREVSA--QSAEDSR 298
           VRRPKFIVCTGGNPSGYIPT+TS  STTSG+ SGNIWRNLSSLMPQREVS   QS EDSR
Sbjct: 241 VRRPKFIVCTGGNPSGYIPTNTSSYSTTSGIFSGNIWRNLSSLMPQREVSTQPQSVEDSR 300

Query: 299 FPGAGRTLGSSQGQMASGIQSNSNLQARLLEDSSPNQPSE 338
           FPG GRTL ++QGQ ASG   +SNLQARLLED+SPN  S+
Sbjct: 301 FPGRGRTLAAAQGQNASGFHPDSNLQARLLEDNSPNHLSD 340


>Medtr4g123573.1 | rhomboid-like protein | HC |
           chr4:51389558-51390903 | 20130731
          Length = 335

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 12/190 (6%)

Query: 29  PFLTSAVVVVCGAIYLVCLLVGY--DSFAEICFLPSAVVSRFQVYRIYTAILFHGSLLHV 86
           P +T+A++     IYL    + +      E+ F    ++    + R + +  +H    H+
Sbjct: 32  PPVTAALIAANTVIYLRPSFLRHLIPPIDEVLFNSHLILKNKDLKRFFLSAFYHLGEPHL 91

Query: 87  LFNMMALVPLGSELERIMGSVRLL-YVTILLATSNAIFHVLIALLVTYNPFVKFDY--LM 143
           +FNM++L+  G  LE  +GS++    +  LLA S +I      L+++ + FV FDY    
Sbjct: 92  VFNMISLLWKGIHLESSIGSLQFASMIASLLALSQSI-----NLVLSKSLFVFFDYDRYY 146

Query: 144 NECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAXXXXXXXXXXMQNVSLLGH 203
            E A GFSGVLF+M ++  S S   + +V+G+  +P+++ A          + NVS LGH
Sbjct: 147 YEYAAGFSGVLFAMKIVLNSQSDDYT-NVYGVL-IPSRYAAWAELILIQMFVPNVSFLGH 204

Query: 204 LCGILSGFAY 213
           L GIL+G  Y
Sbjct: 205 LSGILAGLVY 214


>Medtr4g067340.1 | S54 (rhomboid) subfamily peptidase | HC |
           chr4:25424578-25426275 | 20130731
          Length = 271

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 91/198 (45%), Gaps = 21/198 (10%)

Query: 32  TSAVVVVCGAI--YLVCLLVGYDSFAEICFLPSAVVSRFQVYRIYTAILFHGSLLHVLFN 89
           TS ++ +C AI  Y+    +GY        L        Q +RI T+   H S++H++FN
Sbjct: 15  TSVIIAICSAIWFYIQKKNIGYSHVG----LSYETAMEGQYWRIITSAFSHISIIHLVFN 70

Query: 90  MMALVPLGS--ELERI-MGSVRLLYVTILLATSN-----AIFHVLIALLVTYNPFVKFDY 141
           M AL  LG+  +L+ + +G    L  T++L   +     A++H+LI          K +Y
Sbjct: 71  MSALWSLGAVEQLDHVGLGVEYYLQYTLVLVVVSGVLVLAMYHLLIQRF-------KVEY 123

Query: 142 LMNECAIGFSGVLFSMIVIETSLSGVQSRSVFGLFNVPAKWYAXXXXXXXXXXMQNVSLL 201
                A+G+S V+F  + I +         +FG  ++P  +            +   S +
Sbjct: 124 FRRVTAVGYSCVVFGWMTILSVKQPSSKLELFGFLSLPISFAPFESLIFTSIIVPQASFI 183

Query: 202 GHLCGILSGFAYTYGLFN 219
           GHL GI+ G+A  +GL +
Sbjct: 184 GHLSGIVVGYAIAWGLIH 201