Miyakogusa Predicted Gene

Lj1g3v4763720.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4763720.1 Non Characterized Hit- tr|I3TA70|I3TA70_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,95.35,0,Ribosomal_S8,Ribosomal protein S8; 30S RIBOSOMAL PROTEIN
S8,Ribosomal protein S8; no description,NUL,CUFF.33157.1
         (157 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g101910.1 | ribosomal protein S8 | HC | chr8:42834284-4283...   243   5e-65
Medtr8g101910.2 | ribosomal protein S8 | HC | chr8:42834232-4283...   182   1e-46
Medtr4g094598.2 | ribosomal protein S8 | HC | chr4:38336236-3833...   137   3e-33
Medtr4g094598.1 | ribosomal protein S8 | HC | chr4:38336151-3833...   137   3e-33
Medtr1g105415.1 | ribosomal protein S8 | HC | chr1:47433027-4743...   137   3e-33
Medtr4g117470.1 | ribosomal protein S8 | HC | chr4:48718818-4872...   136   7e-33

>Medtr8g101910.1 | ribosomal protein S8 | HC |
           chr8:42834284-42832277 | 20130731
          Length = 129

 Score =  243 bits (621), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 114/129 (88%), Positives = 123/129 (95%)

Query: 29  MGRRILNDALRTMVNAEKRGKAAVELSHISTVISSFLQIMKNRGYVKNFQVYDPHRVGRI 88
           MGRRILNDALR+MVNAEKRGKA VEL  IS VISSFL IMK+RGY+K+FQVYDPHRVGRI
Sbjct: 1   MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLHIMKHRGYIKDFQVYDPHRVGRI 60

Query: 89  TVELQGRINDCKALTYRQDLKARDIEAYRLNTLPTNQWGYVVISTPDGVLDHEEAIRKNV 148
           TVELQGRINDCKALTYRQDLKA+DIEAYRLNTLPT+QWGYVVI+TPDGVLDHEEA ++NV
Sbjct: 61  TVELQGRINDCKALTYRQDLKAKDIEAYRLNTLPTHQWGYVVITTPDGVLDHEEAAKRNV 120

Query: 149 GGQVLGYFH 157
           GGQVLGYFH
Sbjct: 121 GGQVLGYFH 129


>Medtr8g101910.2 | ribosomal protein S8 | HC |
           chr8:42834232-42832191 | 20130731
          Length = 99

 Score =  182 bits (461), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 87/99 (87%), Positives = 93/99 (93%)

Query: 29  MGRRILNDALRTMVNAEKRGKAAVELSHISTVISSFLQIMKNRGYVKNFQVYDPHRVGRI 88
           MGRRILNDALR+MVNAEKRGKA VEL  IS VISSFL IMK+RGY+K+FQVYDPHRVGRI
Sbjct: 1   MGRRILNDALRSMVNAEKRGKAMVELKPISNVISSFLHIMKHRGYIKDFQVYDPHRVGRI 60

Query: 89  TVELQGRINDCKALTYRQDLKARDIEAYRLNTLPTNQWG 127
           TVELQGRINDCKALTYRQDLKA+DIEAYRLNTLPT+Q G
Sbjct: 61  TVELQGRINDCKALTYRQDLKAKDIEAYRLNTLPTHQVG 99


>Medtr4g094598.2 | ribosomal protein S8 | HC |
           chr4:38336236-38338200 | 20130731
          Length = 130

 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 88/125 (70%)

Query: 33  ILNDALRTMVNAEKRGKAAVELSHISTVISSFLQIMKNRGYVKNFQVYDPHRVGRITVEL 92
           +LNDAL++M NAEKRGK  V +   S VI  FL +M+  GY+  F+  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 93  QGRINDCKALTYRQDLKARDIEAYRLNTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 152
            GR+N C  ++ R D+  ++IE +    LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 153 LGYFH 157
           LG+F+
Sbjct: 126 LGFFY 130


>Medtr4g094598.1 | ribosomal protein S8 | HC |
           chr4:38336151-38338274 | 20130731
          Length = 130

 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 88/125 (70%)

Query: 33  ILNDALRTMVNAEKRGKAAVELSHISTVISSFLQIMKNRGYVKNFQVYDPHRVGRITVEL 92
           +LNDAL++M NAEKRGK  V +   S VI  FL +M+  GY+  F+  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 93  QGRINDCKALTYRQDLKARDIEAYRLNTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 152
            GR+N C  ++ R D+  ++IE +    LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 153 LGYFH 157
           LG+F+
Sbjct: 126 LGFFY 130


>Medtr1g105415.1 | ribosomal protein S8 | HC |
           chr1:47433027-47430285 | 20130731
          Length = 130

 Score =  137 bits (346), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 88/125 (70%)

Query: 33  ILNDALRTMVNAEKRGKAAVELSHISTVISSFLQIMKNRGYVKNFQVYDPHRVGRITVEL 92
           +LNDAL++M NAEKRGK  V +   S VI  FL +M+  GY+  F+  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLMVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 93  QGRINDCKALTYRQDLKARDIEAYRLNTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 152
            GR+N C  ++ R D+  ++IE +    LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 153 LGYFH 157
           LG+F+
Sbjct: 126 LGFFY 130


>Medtr4g117470.1 | ribosomal protein S8 | HC |
           chr4:48718818-48720181 | 20130731
          Length = 130

 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 62/125 (49%), Positives = 88/125 (70%)

Query: 33  ILNDALRTMVNAEKRGKAAVELSHISTVISSFLQIMKNRGYVKNFQVYDPHRVGRITVEL 92
           +LNDAL++M NAEKRGK  V +   S VI  FL +M+  GY+  F+  D HR G+I VEL
Sbjct: 6   VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVEL 65

Query: 93  QGRINDCKALTYRQDLKARDIEAYRLNTLPTNQWGYVVISTPDGVLDHEEAIRKNVGGQV 152
            GR+N C  ++ R D+  ++IE +    LP+ Q+GY+V++T  G++DHEEA RKNVGG+V
Sbjct: 66  NGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKV 125

Query: 153 LGYFH 157
           LG+F+
Sbjct: 126 LGFFY 130