Miyakogusa Predicted Gene
- Lj1g3v4763560.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4763560.1 Non Characterized Hit- tr|I1I6S1|I1I6S1_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,31.15,3e-17,SAM_2,Sterile alpha motif, type 2; no
description,Sterile alpha motif/pointed domain;
SAM_DOMAIN,Ste,CUFF.33147.1
(258 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g107080.1 | SAM domain protein | HC | chr7:43660398-436621... 286 1e-77
Medtr8g099820.2 | SAM domain protein | HC | chr8:40339866-403415... 53 2e-07
Medtr8g099820.1 | SAM domain protein | HC | chr8:40339866-403415... 53 2e-07
Medtr3g498865.1 | SAM domain protein | HC | chr3:45201119-452022... 51 1e-06
>Medtr7g107080.1 | SAM domain protein | HC | chr7:43660398-43662139
| 20130731
Length = 241
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 147/228 (64%), Positives = 171/228 (75%), Gaps = 4/228 (1%)
Query: 34 EDGDWVIVKKQRVTILVSAAPRGEG--DQEPSHVHPMPPGTLSSNRVELPMETSTLNPSG 91
ED DW+IVKKQRV ILV AA ++E +H+HPMP +S N +LP ET NPS
Sbjct: 15 EDDDWIIVKKQRVIILVPAASERSSTENEEVNHIHPMP-LVMSGNLQKLPTETPNENPSS 73
Query: 92 SEHEKTILPAAEEETRAVGRASPPLPKSPL-ANSPWVDQRIEPENPHQVSTLKSHELLGV 150
+E +K + A +++ V RA PPL AN P+VDQRIE ENPHQVS+ K H L+GV
Sbjct: 74 NEQDKAVSLAVQKKIHTVRRAPPPLLPKSPSANPPFVDQRIESENPHQVSSFKPHRLVGV 133
Query: 151 SNASKAIRQPRTLLAPRMSSNLVTLSHGLRASNLTRKLERAGGLSRWLTSLGLEQFVRIF 210
SN SK I+QPRTL APR SN TL GLRASNL RKLERAGGL++WL SLGLEQFVR+F
Sbjct: 134 SNTSKTIKQPRTLFAPRRFSNFTTLDRGLRASNLERKLERAGGLNKWLASLGLEQFVRMF 193
Query: 211 QGKRVSKYHLANLTMQKLKDMGASAVGPRRKLIHAIDCVCQPYCFEAL 258
QGK +SKY L NLTM+KLKDMGA+AVGPRRKLIHA+DCVCQPYCFEAL
Sbjct: 194 QGKIISKYQLVNLTMKKLKDMGANAVGPRRKLIHAMDCVCQPYCFEAL 241
>Medtr8g099820.2 | SAM domain protein | HC | chr8:40339866-40341595
| 20130731
Length = 283
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 177 HGLRASNLTRKLERAGGLSRWLTSLGLEQFVRIFQGKRVSKYHLANLTMQKLKDMGASAV 236
+G R N+ R G+ WL LGL ++ +F+ V L LT++ LKDMG +AV
Sbjct: 206 NGDRNDNVGRIRFGEDGIRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGINAV 265
Query: 237 GPRRKLIHAIDCVCQPYC 254
G RRKL AI + + +
Sbjct: 266 GSRRKLYCAIQKLGKGFS 283
>Medtr8g099820.1 | SAM domain protein | HC | chr8:40339866-40341595
| 20130731
Length = 283
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%)
Query: 177 HGLRASNLTRKLERAGGLSRWLTSLGLEQFVRIFQGKRVSKYHLANLTMQKLKDMGASAV 236
+G R N+ R G+ WL LGL ++ +F+ V L LT++ LKDMG +AV
Sbjct: 206 NGDRNDNVGRIRFGEDGIRIWLNGLGLGRYAPVFEVHEVDDEVLPMLTLEDLKDMGINAV 265
Query: 237 GPRRKLIHAIDCVCQPYC 254
G RRKL AI + + +
Sbjct: 266 GSRRKLYCAIQKLGKGFS 283
>Medtr3g498865.1 | SAM domain protein | HC | chr3:45201119-45202207
| 20130731
Length = 231
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%)
Query: 193 GLSRWLTSLGLEQFVRIFQGKRVSKYHLANLTMQKLKDMGASAVGPRRKLIHAIDCVCQP 252
G+ WL LGL ++ +FQ V L LT++ LKDMG +AVG RRKL AI + +
Sbjct: 170 GVRIWLNGLGLGRYAPVFQIHEVDDEVLPLLTLEDLKDMGINAVGSRRKLYCAIQKLGKG 229
Query: 253 Y 253
+
Sbjct: 230 F 230