Miyakogusa Predicted Gene
- Lj1g3v4752650.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4752650.1 tr|A9TLQ3|A9TLQ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_147462,41.41,0.00000000000005,RNA recognition motif,RNA
recognition motif domain; RRM_1,RNA recognition motif domain;
SUBFAMILY NO,CUFF.33079.1
(320 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 440 e-123
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 280 2e-75
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 280 2e-75
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 154 1e-37
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 152 4e-37
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 152 6e-37
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 152 6e-37
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 144 1e-34
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 142 4e-34
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 133 3e-31
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 105 7e-23
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 96 3e-20
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 96 3e-20
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 93 3e-19
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 91 1e-18
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 87 2e-17
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 86 6e-17
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 84 2e-16
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 84 2e-16
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 84 3e-16
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 84 3e-16
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 82 5e-16
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 82 6e-16
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 81 1e-15
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 80 2e-15
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 78 9e-15
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 78 9e-15
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 78 1e-14
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 78 1e-14
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 77 3e-14
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 76 4e-14
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 75 6e-14
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 75 1e-13
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 74 2e-13
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 74 3e-13
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 5e-13
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 5e-13
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 72 5e-13
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 71 1e-12
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 71 1e-12
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 71 2e-12
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 2e-12
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 4e-12
Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 69 4e-12
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 4e-12
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 7e-12
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 8e-12
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 1e-11
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 68 1e-11
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 2e-11
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 66 5e-11
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 66 5e-11
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 6e-11
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 65 9e-11
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 1e-10
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 64 1e-10
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 64 1e-10
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 64 1e-10
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 64 2e-10
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 2e-10
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 64 2e-10
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 64 3e-10
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 7e-10
Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 8e-10
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 1e-09
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 62 1e-09
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 2e-09
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 2e-09
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 60 2e-09
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 2e-09
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 60 4e-09
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 4e-09
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 59 5e-09
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 59 5e-09
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 59 6e-09
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 59 6e-09
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 6e-09
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 7e-09
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC... 59 8e-09
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro... 59 8e-09
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 1e-08
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 58 2e-08
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 2e-08
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 57 2e-08
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 57 3e-08
Medtr5g070100.1 | RNA recognition motif (RRM) containing protein... 57 3e-08
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 57 3e-08
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 3e-08
Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 3e-08
Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC... 57 3e-08
Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 5e-08
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 56 6e-08
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 56 6e-08
Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC... 55 6e-08
Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 7e-08
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 7e-08
Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC... 55 1e-07
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c... 55 1e-07
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c... 55 1e-07
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c... 55 1e-07
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 1e-07
Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 2e-07
Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 2e-07
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 54 3e-07
Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC | c... 53 3e-07
Medtr1g088180.1 | ASF/SF2-like pre-mRNA splicing factor SRP32, p... 53 4e-07
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 52 6e-07
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 7e-07
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 8e-07
Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 9e-07
Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 52 1e-06
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 51 1e-06
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 51 1e-06
Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 1e-06
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 2e-06
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 2e-06
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 50 2e-06
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 50 3e-06
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 4e-06
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 4e-06
Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 5e-06
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 49 5e-06
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr3g092580.1 | pre-mRNA-splicing factor SF2-like protein | HC... 49 5e-06
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 49 5e-06
Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 49 5e-06
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 49 6e-06
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 49 6e-06
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 49 7e-06
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 49 7e-06
Medtr2g018390.1 | multiple RNA-binding domain protein, putative ... 49 9e-06
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/319 (69%), Positives = 253/319 (79%), Gaps = 5/319 (1%)
Query: 3 STTSVSSSICNRIYNLSFKHSSLALTC-NFSQRPISQKAFNLNLKFQSFIXXXXXXXXXX 61
ST VSSSI NRI NLSF HSS++LT NF Q PIS K FNL LK QSFI
Sbjct: 4 STAYVSSSIFNRINNLSFTHSSISLTTTNFPQTPISHKPFNLTLKSQSFILSSLPLQSLH 63
Query: 62 XXXXXTDEFEVAQDSTDSRQDNPEPEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYS 121
TDEFE +QD+ S+Q PEPE TSDKP+Q+EEQKV+TS D RLYVGNLP+S
Sbjct: 64 PPFVATDEFETSQDTIISQQQEPEPE----TSDKPKQDEEQKVTTSDDAGRLYVGNLPFS 119
Query: 122 MTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRI 181
MTSSQL +IF EAGTVVSVE++YDR+TDRSRGFAFVTM S ++AKEAIRMFDGSQVGGR
Sbjct: 120 MTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMFDGSQVGGRS 179
Query: 182 VRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLV 241
+VNFPEVPKGGERLVMG K+RN+ R FVDS HKIYAGNLGW ++SQDL+D F EQPGL+
Sbjct: 180 AKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRDAFDEQPGLL 239
Query: 242 SAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVT 301
AK+IYERD+GRSRGFGFVTFETA+ +EAAL MNGVEVQGR LRLNLAA + SP V
Sbjct: 240 GAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNLAAARTSPSPPVI 299
Query: 302 EENEGSSVDTSELVSSAST 320
EEN +++++SELVSSAST
Sbjct: 300 EENTKNNIESSELVSSAST 318
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/322 (49%), Positives = 217/322 (67%), Gaps = 23/322 (7%)
Query: 1 MASTTSVSSSICNRIYNLSFK-HSSLA-LTCNFSQRP-----ISQKAFNLNLKFQSFIXX 53
MA ++ S I +R++NLSF HSS++ +T NF R IS K FNL S +
Sbjct: 1 MAGASTGSFPIYHRLFNLSFTTHSSISHITLNFPHRTTTTTTISSKPFNL----ISQLFN 56
Query: 54 XXXXXXXXXXXXXTDEFEVAQDSTDSRQDNPEPEPETETSDKPQQEEEQKVSTSSDDRRL 113
+F ++ ++S ++ SD Q+ E S+ RRL
Sbjct: 57 PLHPPPSFSFYEEEQQFFESESESESESESETETETLLNSDLNQEAE------STQSRRL 110
Query: 114 YVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFD 173
+VGNLP+S++SSQL ++F EAG VVSVE++YD +T+RSRGFAFVTMG+V+DA+EAIRMFD
Sbjct: 111 FVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFD 170
Query: 174 GSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDV 233
G+ VGGR ++VNFPEVP G+R+ MG + R +VDS HKIYAGNLGW ++SQ L+
Sbjct: 171 GTTVGGRAIKVNFPEVPIVGKRVQMG----STYRGYVDSPHKIYAGNLGWDMTSQYLRKA 226
Query: 234 FAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAVK 293
FA+QPGL+SAKV+YER++G+SRG+GFV+FETA+DVE AL MNGVEVQGR LRL LA
Sbjct: 227 FAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDN 286
Query: 294 APSSPSVTEENEGSSVDTSELV 315
PS ++N+G++VD+ E++
Sbjct: 287 --RKPSSLDQNKGNNVDSLEML 306
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 280 bits (715), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 159/322 (49%), Positives = 217/322 (67%), Gaps = 23/322 (7%)
Query: 1 MASTTSVSSSICNRIYNLSFK-HSSLA-LTCNFSQRP-----ISQKAFNLNLKFQSFIXX 53
MA ++ S I +R++NLSF HSS++ +T NF R IS K FNL S +
Sbjct: 1 MAGASTGSFPIYHRLFNLSFTTHSSISHITLNFPHRTTTTTTISSKPFNL----ISQLFN 56
Query: 54 XXXXXXXXXXXXXTDEFEVAQDSTDSRQDNPEPEPETETSDKPQQEEEQKVSTSSDDRRL 113
+F ++ ++S ++ SD Q+ E S+ RRL
Sbjct: 57 PLHPPPSFSFYEEEQQFFESESESESESESETETETLLNSDLNQEAE------STQSRRL 110
Query: 114 YVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFD 173
+VGNLP+S++SSQL ++F EAG VVSVE++YD +T+RSRGFAFVTMG+V+DA+EAIRMFD
Sbjct: 111 FVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMFD 170
Query: 174 GSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDV 233
G+ VGGR ++VNFPEVP G+R+ MG + R +VDS HKIYAGNLGW ++SQ L+
Sbjct: 171 GTTVGGRAIKVNFPEVPIVGKRVQMG----STYRGYVDSPHKIYAGNLGWDMTSQYLRKA 226
Query: 234 FAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAVK 293
FA+QPGL+SAKV+YER++G+SRG+GFV+FETA+DVE AL MNGVEVQGR LRL LA
Sbjct: 227 FAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLAVDN 286
Query: 294 APSSPSVTEENEGSSVDTSELV 315
PS ++N+G++VD+ E++
Sbjct: 287 --RKPSSLDQNKGNNVDSLEML 306
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 154 bits (389), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 75/182 (41%), Positives = 115/182 (63%), Gaps = 12/182 (6%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+LY GNLPYS+ S+ L + E G+ +EV+YDR T +SRGFAFVTM V+D I+
Sbjct: 114 KLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQN 173
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
DG + GR +RVNF + PK E L + ++ +K++ GNL W V+S+ L
Sbjct: 174 LDGKEFMGRTLRVNFSDKPKPKEPL------------YPETEYKLFVGNLAWTVTSESLT 221
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAA 291
F E +V A+V+++ ++G+SRG+GFV++ T +++ AL M+ VE++GR LR++LA
Sbjct: 222 QAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQ 281
Query: 292 VK 293
K
Sbjct: 282 GK 283
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
VD+ K+Y GNL + V S L + E +V+Y+RD+G+SRGF FVT +D
Sbjct: 109 VDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCN 168
Query: 270 AALKTMNGVEVQGRELRLNLAAVKAPSSP 298
A ++ ++G E GR LR+N + P P
Sbjct: 169 AVIQNLDGKEFMGRTLRVNFSDKPKPKEP 197
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 80/190 (42%), Positives = 118/190 (62%), Gaps = 4/190 (2%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
EQ S R+LYVGN+P ++++ +L +I E G V EVMYD+ + RSR FAFVTM
Sbjct: 50 EQATVDSPALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMK 109
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGN 220
+V+DA A +G+++GGR ++VN E P E G ++ FVDS +K+Y GN
Sbjct: 110 TVEDANAAAEKLNGTEIGGREIKVNITEKPLTTE----GLPVQAGESTFVDSPYKVYVGN 165
Query: 221 LGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
L V+S LK F+E+ +SAKV + +S GFGFVTF + +DVEAA+ + N +
Sbjct: 166 LAKNVTSDSLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALL 225
Query: 281 QGRELRLNLA 290
+G+++R+N A
Sbjct: 226 EGQKIRVNKA 235
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 19/197 (9%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S ++RL+VGNLP+S+ S+QL EIF AG V VEV+YD+ T RSRGF FVTM S + +
Sbjct: 81 SPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEA 140
Query: 168 AIRMFDGSQVGGRIVRVN-------------FPEVPK-GGERLVMGPKIRNNNRDFVDSS 213
A + +G V GR +RVN F E P+ GG+R P+ ++ D
Sbjct: 141 AAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSS-----DGD 195
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
++++ GNL W V + L+ +F EQ ++ AKVIY+R+SGRSRGFGFVTF +A +V++A++
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 274 TMNGVEVQGRELRLNLA 290
T++G ++ GR +R++ A
Sbjct: 256 TLDGADLNGRAIRVSPA 272
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+ +++ GNL + V S L ++F + +VIY++ +GRSRGFGFVT +A +VEAA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSS 297
+ +NG V GRELR+N P S
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRS 167
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 86/197 (43%), Positives = 128/197 (64%), Gaps = 19/197 (9%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S ++RL+VGNLP+S+ S+QL EIF AG V VEV+YD+ T RSRGF FVTM S + +
Sbjct: 81 SPNQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEA 140
Query: 168 AIRMFDGSQVGGRIVRVN-------------FPEVPK-GGERLVMGPKIRNNNRDFVDSS 213
A + +G V GR +RVN F E P+ GG+R P+ ++ D
Sbjct: 141 AAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSS-----DGD 195
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
++++ GNL W V + L+ +F EQ ++ AKVIY+R+SGRSRGFGFVTF +A +V++A++
Sbjct: 196 NRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIR 255
Query: 274 TMNGVEVQGRELRLNLA 290
T++G ++ GR +R++ A
Sbjct: 256 TLDGADLNGRAIRVSPA 272
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 53/85 (62%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+ +++ GNL + V S L ++F + +VIY++ +GRSRGFGFVT +A +VEAA
Sbjct: 83 NQRLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAA 142
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSS 297
+ +NG V GRELR+N P S
Sbjct: 143 QQLNGYVVDGRELRVNAGPPPPPRS 167
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 116/183 (63%), Gaps = 9/183 (4%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S+D +++VGNLP+ + S +L ++F ++GTV EV+Y+R TDRSRGF FVTM + ++ +
Sbjct: 119 SEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVER 178
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
A+ F G ++ GR++ VN P+G RL P+ N S + Y GNL W V +
Sbjct: 179 AVNKFSGFELDGRLLTVN-KAAPRGTPRLRQ-PRTFN-------SGLRAYVGNLPWDVDN 229
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
L+ +F+E + SA+V+Y+R++GRSRGFGFVT ++ A+ ++G GR +R+
Sbjct: 230 SSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
Query: 288 NLA 290
N+A
Sbjct: 290 NVA 292
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 49/77 (63%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R YVGNLP+ + +S L ++F E G V S +V+YDR T RSRGF FVTM + + +AI
Sbjct: 217 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 276
Query: 172 FDGSQVGGRIVRVNFPE 188
DG GR +RVN E
Sbjct: 277 LDGQSFNGRAIRVNVAE 293
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 54/81 (66%), Gaps = 2/81 (2%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVS-AKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
KI+ GNL + V S+ L +F EQ G V A+VIY RD+ RSRGFGFVT T+++VE A+
Sbjct: 123 KIFVGNLPFDVDSEKLAQLF-EQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVN 181
Query: 274 TMNGVEVQGRELRLNLAAVKA 294
+G E+ GR L +N AA +
Sbjct: 182 KFSGFELDGRLLTVNKAAPRG 202
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 114/184 (61%), Gaps = 10/184 (5%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
+D +L+VGN P+ + S +L +F +AGTV EV+Y+R TD SRGF FVTM +V++A+ A
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGG--ERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVS 226
+ F+G GR + VN PKG ER P+ + +IY NL W V
Sbjct: 167 VEKFNGYDYNGRSLVVN-KASPKGSRPERTERAPRT-------FEPVLRIYVANLAWEVD 218
Query: 227 SQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELR 286
+ L+ VF+E +VSA+V+Y+R++GRSRGFGFVT ++ A+ ++G ++GR +R
Sbjct: 219 NSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIR 278
Query: 287 LNLA 290
+++A
Sbjct: 279 VSVA 282
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 49/77 (63%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R+YV NL + + +S+L ++F E G +VS V+YDR T RSRGF FVTM + +AI
Sbjct: 207 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 266
Query: 172 FDGSQVGGRIVRVNFPE 188
DG + GR +RV+ E
Sbjct: 267 LDGQSLEGRTIRVSVAE 283
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ GN + V S+ L +F + + A+VIY R + SRGFGFVT T ++ E+A++
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 275 MNGVEVQGRELRLNLAAVKAPSSPSVTE 302
NG + GR L +N A+ K S P TE
Sbjct: 170 FNGYDYNGRSLVVNKASPKG-SRPERTE 196
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 104/171 (60%), Gaps = 10/171 (5%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
+D +L+VGN P+ + S +L +F +AGTV EV+Y+R TD SRGF FVTM +V++A+ A
Sbjct: 107 EDAKLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESA 166
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGG--ERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVS 226
+ F+G GR + VN PKG ER P+ + +IY NL W V
Sbjct: 167 VEKFNGYDYNGRSLVVN-KASPKGSRPERTERAPRT-------FEPVLRIYVANLAWEVD 218
Query: 227 SQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
+ L+ VF+E +VSA+V+Y+R++GRSRGFGFVT ++ A+ ++G
Sbjct: 219 NSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ GN + V S+ L +F + + A+VIY R + SRGFGFVT T ++ E+A++
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 169
Query: 275 MNGVEVQGRELRLNLAAVKAPSSPSVTE 302
NG + GR L +N A+ K S P TE
Sbjct: 170 FNGYDYNGRSLVVNKASPKG-SRPERTE 196
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 112/196 (57%), Gaps = 11/196 (5%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
+ L V NLP+S++ + ++F + GTV+ VE++ + + +G+ FVTM S + A+ A+
Sbjct: 96 KNLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSK-DGKGKGYTFVTMDSGEGAQAAVD 154
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
F+ +++ GRI+RV F KG P+ ++ + IYA NL W+ S L
Sbjct: 155 KFNATEISGRILRVEFA---KG----FKKPRPPPPAPTPKEARYVIYASNLAWKARSTHL 207
Query: 231 KDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 289
+D+F E VSA+V+++ G+S G+GFV++ T ++ EAA+ + G E+ GR L + +
Sbjct: 208 RDIFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKI 267
Query: 290 A--AVKAPSSPSVTEE 303
+ VK S V E+
Sbjct: 268 SERKVKEAGSEEVEEK 283
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 25/221 (11%)
Query: 98 QEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEV-MYDRVTDRSRGFAF 156
QE+ +++ST+ RL N+P+S T+ + +F + G V+ VE+ MY++ +R+RG AF
Sbjct: 80 QEQTEELSTT----RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRGLAF 133
Query: 157 VTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKI 216
V MGS ++A EA+ + GRI+ + + + K + K ++ +
Sbjct: 134 VEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERK---------PITYNL 184
Query: 217 YAGNLGWRVSSQDLKDVFAEQPG-LVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+ N + S+D+K+ F G +VSA+VI+ + R G+GFV++++ ++ + AL
Sbjct: 185 FVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEF 244
Query: 276 NGVEVQGRELRLNLAAVKAPSSPSV--TEENEGSSVDTSEL 314
G GR LR+ APS V EE+ GS +SEL
Sbjct: 245 QGKNFMGRPLRV------APSKRFVQLAEESAGSEDTSSEL 279
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 117/221 (52%), Gaps = 25/221 (11%)
Query: 98 QEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEV-MYDRVTDRSRGFAF 156
QE+ +++ST+ RL N+P+S T+ + +F + G V+ VE+ MY++ +R+RG AF
Sbjct: 80 QEQTEELSTT----RLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNK--NRNRGLAF 133
Query: 157 VTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKI 216
V MGS ++A EA+ + GRI+ + + + K + K ++ +
Sbjct: 134 VEMGSPEEASEALNSLQSYEFDGRIINIQYAKPKKEKIPPPVERK---------PITYNL 184
Query: 217 YAGNLGWRVSSQDLKDVFAEQPG-LVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+ N + S+D+K+ F G +VSA+VI+ + R G+GFV++++ ++ + AL
Sbjct: 185 FVANFPYEARSKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEF 244
Query: 276 NGVEVQGRELRLNLAAVKAPSSPSV--TEENEGSSVDTSEL 314
G GR LR+ APS V EE+ GS +SEL
Sbjct: 245 QGKNFMGRPLRV------APSKRFVQLAEESAGSEDTSSEL 279
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 58/193 (30%), Positives = 106/193 (54%), Gaps = 17/193 (8%)
Query: 102 QKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
Q + + D YVGNL ++ L E+FV+AG VV+V V DRVT++ +G+ FV S
Sbjct: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
Query: 162 VDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNL 221
+DA AI++ + ++ G+ +RVN + ++ +D ++ GNL
Sbjct: 76 EEDADYAIKVLNMIKLYGKPIRVN----------------KASQDKKSLDVGANLFIGNL 119
Query: 222 GWRVSSQDLKDVFAEQPGLVS-AKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
V + L D F+ +V+ K++ + D+G SRGFGF+++++ + ++A++ MNG +
Sbjct: 120 DPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYL 179
Query: 281 QGRELRLNLAAVK 293
R++ ++ A K
Sbjct: 180 CNRQITVSYAYKK 192
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 96/186 (51%), Gaps = 15/186 (8%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R L++G+L Y + + LT F G V+S++++ +++T + G+ F+ S A+ ++
Sbjct: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
Query: 171 MFDGSQVGG--RIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
++G+Q+ G + R+N+ G R GP H I+ G+L V+
Sbjct: 75 TYNGTQMPGTEQTFRLNWASFGIGERRPDAGP------------DHSIFVGDLAPDVTDY 122
Query: 229 DLKDVFAEQPGLV-SAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
L++ F G V AKV+ + ++GRS+G+GFV F + A+ MNGV R +R+
Sbjct: 123 LLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 182
Query: 288 NLAAVK 293
+ A K
Sbjct: 183 SAATPK 188
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 93/186 (50%), Gaps = 15/186 (8%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV NL +T L E F G +VS+ + D +S+GF FV S DDA+ A+
Sbjct: 196 LYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDE-NGQSKGFGFVNYDSPDDARRAMEAM 254
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK-----IYAGNLGWRVSS 227
DGSQ G +I+ V + E+++ + FV+ K IY N+ V
Sbjct: 255 DGSQFGSKILYVARAQKKVEREQIL--------HHLFVEKGLKHMGSNIYVKNIDTSVGD 306
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
++L+D F+ ++SAKV+ + D G S+GFGFV F T + ++ NG G+ L +
Sbjct: 307 EELRDHFSACGEVLSAKVMRD-DKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYV 365
Query: 288 NLAAVK 293
+ A K
Sbjct: 366 DFAQKK 371
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 89/173 (51%), Gaps = 16/173 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L +T +QL + F E T++S V D T +S + +V + S +A AI +
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ S + G+++RV + L R + + ++ NL + + L D
Sbjct: 77 NHSSLNGKVIRVMW---------LSRDADARKSGKG------NVFVKNLAASIDNVGLHD 121
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
+F + ++S+K+ D G+S+GFG++ F++ + A++ MNG V+ +++
Sbjct: 122 LFQKYGNILSSKIARSED-GKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQI 173
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 92/185 (49%), Gaps = 21/185 (11%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTD-RSRGFAFVTMGSVDDAKEAIRM 171
++V NL S+ + L ++F + G ++S ++ R D +S+GF ++ S + A AI+
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIA--RSEDGKSKGFGYIQFDSEESANVAIQK 162
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK---IYAGNLGWRVSSQ 228
+GS V + ++ +G IR + R D K +Y NL V+ +
Sbjct: 163 MNGSTVRDK--------------QIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEK 208
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
L + F+ +VS I + ++G+S+GFGFV +++ D A++ M+G + + L +
Sbjct: 209 HLGEKFSSFGKIVSL-AIKKDENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVA 267
Query: 289 LAAVK 293
A K
Sbjct: 268 RAQKK 272
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 104/201 (51%), Gaps = 15/201 (7%)
Query: 96 PQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFA 155
PQQ S++ + + L++G+L Y M + L F G V SV+V+ ++ T++S G+
Sbjct: 59 PQQSAVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYG 118
Query: 156 FVTMGSVDDAKEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSS 213
F+ S A+ ++ F+G+ + GG+ R+N+ G +R +++ D+
Sbjct: 119 FLEFISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKR-------HDDSPDYT--- 168
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLV-SAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
I+ G+L VS L +VF + V AKV+ +R +GR++G+GFV F + A+
Sbjct: 169 --IFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAM 226
Query: 273 KTMNGVEVQGRELRLNLAAVK 293
M GV R +R+ A+ K
Sbjct: 227 TEMQGVLCSTRPMRIGPASNK 247
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 20/198 (10%)
Query: 102 QKVSTSSDDRRLYVGNLPYSMTSSQLTEIF-VEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
+K S D ++VG+L ++ LTE+F +V +V+ DR T R++G+ FV
Sbjct: 158 EKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFA 217
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERL--------VMGPKIRNNNRDFVDS 212
+ A+ G R +R+ P + L P+ N + ++
Sbjct: 218 DESEQMRAMTEMQGVLCSTRPMRIG----PASNKNLGTQTSKASYQNPQGGAQNENDPNN 273
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+ I+ GNL V+ + LK VF + LV K+ SG+ GFV F E AL
Sbjct: 274 T-TIFVGNLDPNVTDEHLKQVFTQYGELVHVKI----PSGKR--CGFVQFADRSSAEEAL 326
Query: 273 KTMNGVEVQGRELRLNLA 290
+ +NG + G+ +RL+
Sbjct: 327 RVLNGTLLGGQNVRLSWG 344
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 104/202 (51%), Gaps = 13/202 (6%)
Query: 99 EEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVT 158
+ Q+ +++ + R L++G+L Y M + L F G + SV+V+ ++ T +S G+ F+
Sbjct: 48 QPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIE 107
Query: 159 MGSVDDAKEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKI 216
+ A+ ++ ++G+ + GG+ R+N+ GER ++R H I
Sbjct: 108 FNTRATAERVLQTYNGTIMPNGGQNYRLNWATF-SAGER---------SSRQDDGPDHTI 157
Query: 217 YAGNLGWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+ G+L V+ L++ F A + AKV+ +R +GRS+G+GFV F + A+ M
Sbjct: 158 FVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEM 217
Query: 276 NGVEVQGRELRLNLAAVKAPSS 297
GV R +R+ A K P++
Sbjct: 218 QGVLCSTRPMRIGPATNKNPAA 239
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 13/186 (6%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIF-VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D ++VG+L +T L E F +V +V+ DR+T RS+G+ FV + A
Sbjct: 154 DHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRA 213
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNN----NRDFVDSSHKIYAGNLGWR 224
+ G R +R+ P K PK N + ++ I+ GNL
Sbjct: 214 MTEMQGVLCSTRPMRIG-PATNKNPAATTQ-PKASYNPSGGQSENDPNNTTIFVGNLDPN 271
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRE 284
V+ L+ VF + LV K+ SG+ GFV F E A++ +NG + G+
Sbjct: 272 VTDDHLRQVFTQYGELVHVKI----PSGKR--CGFVQFSDRSCAEEAIRVLNGTLLGGQN 325
Query: 285 LRLNLA 290
+RL+
Sbjct: 326 VRLSWG 331
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 18/229 (7%)
Query: 84 PEPEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVM 143
P+ P + Q Q+ +++ + R L++G+L Y M + L F G + SV+V+
Sbjct: 35 PQQPPAMWAAQSAQ--PPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVI 92
Query: 144 YDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLVMGPK 201
++ T +S G+ F+ + A+ ++ ++G+ + GG+ R+N+ GER
Sbjct: 93 RNKQTSQSEGYGFIEFNTRATAERVLQTYNGTIMPNGGQNYRLNWATF-SAGER------ 145
Query: 202 IRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFV 260
++R H I+ G+L V+ L++ F A + AKV+ +R +GRS+G+GFV
Sbjct: 146 ---SSRQDDGPDHTIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFV 202
Query: 261 TFETAQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSSV 309
F + A+ M GV R +R+ A K +P+ T + +G S+
Sbjct: 203 RFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK---NPAATTQPKGLSL 248
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 14/220 (6%)
Query: 102 QKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
Q+ +++ + R L++G+L Y M + L F G + SV+V+ ++ T +S G+ F+ +
Sbjct: 51 QQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNT 110
Query: 162 VDDAKEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAG 219
A+ ++ ++G+ + GG+ R+N+ GER ++R H I+ G
Sbjct: 111 RATAERVLQTYNGTIMPNGGQNYRLNWATF-SAGER---------SSRQDDGPDHTIFVG 160
Query: 220 NLGWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
+L V+ L++ F A + AKV+ +R +GRS+G+GFV F + A+ M GV
Sbjct: 161 DLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGV 220
Query: 279 EVQGRELRLNLAAVKAPSSPSVTEE-NEGSSVDTSELVSS 317
R +R+ A K P++ + + E S + EL+S+
Sbjct: 221 LCSTRPMRIGPATNKNPAATTQPKGCQEALSSRSLELISA 260
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 113/220 (51%), Gaps = 14/220 (6%)
Query: 102 QKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
Q+ +++ + R L++G+L Y M + L F G + SV+V+ ++ T +S G+ F+ +
Sbjct: 51 QQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNT 110
Query: 162 VDDAKEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAG 219
A+ ++ ++G+ + GG+ R+N+ GER ++R H I+ G
Sbjct: 111 RATAERVLQTYNGTIMPNGGQNYRLNWATF-SAGER---------SSRQDDGPDHTIFVG 160
Query: 220 NLGWRVSSQDLKDVF-AEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
+L V+ L++ F A + AKV+ +R +GRS+G+GFV F + A+ M GV
Sbjct: 161 DLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGV 220
Query: 279 EVQGRELRLNLAAVKAPSSPSVTEE-NEGSSVDTSELVSS 317
R +R+ A K P++ + + E S + EL+S+
Sbjct: 221 LCSTRPMRIGPATNKNPAATTQPKGCQEALSSRSLELISA 260
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 100/196 (51%), Gaps = 9/196 (4%)
Query: 103 KVSTSSDDR--RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
++S+ D R LY+ NL ++ + L E F G ++S+ V D S+GF FV
Sbjct: 179 RISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDS-NGMSKGFGFVNFD 237
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGER-LVMGPKIRNNNRDFV--DSSHKIY 217
+ +DAK A+ +G Q+G +I+ V K ER ++ + ++ V IY
Sbjct: 238 NPEDAKRAMETMNGLQLGSKILYV--ARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIY 295
Query: 218 AGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
N+ VS + L+D F+ + SAK++ + D G S+GFGFV F T ++ A+ + +G
Sbjct: 296 VKNIDDNVSDEGLRDHFSVCGTITSAKIMRD-DKGISKGFGFVCFSTPEEANKAVNSFHG 354
Query: 278 VEVQGRELRLNLAAVK 293
G+ L ++LA K
Sbjct: 355 FMFHGKPLYVSLAQRK 370
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 104 VSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVD 163
V S+ LYVG+L ++ SQL + F + T+ SV + D + +S + +V S
Sbjct: 3 VPPSATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPH 62
Query: 164 DAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGW 223
DA AI + + S + G+ +RV + + +G ++ NL
Sbjct: 63 DAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKSCIG---------------NVFVKNLAE 107
Query: 224 RVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGR 283
+ + L+D+F + ++S+KV+ D G+S+G+GFV FET + AA++ +NG V +
Sbjct: 108 SIDNSGLEDMFKKFGNILSSKVVMSED-GKSKGYGFVQFETEESANAAIERLNGYLVGDK 166
Query: 284 EL 285
++
Sbjct: 167 QI 168
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/183 (30%), Positives = 96/183 (52%), Gaps = 15/183 (8%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
++V NL S+ +S L ++F + G ++S +V+ +S+G+ FV + + A AI
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMSE-DGKSKGYGFVQFETEESANAAIERL 158
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+G VG + + V + K +R+ GP R N +Y NL +S L++
Sbjct: 159 NGYLVGDKQIYVG--KFVKKSDRISSGPDTRYTN---------LYMKNLDLDISETLLRE 207
Query: 233 VFAEQPGLVSAKVIYERDS-GRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAA 291
F+ ++S V +DS G S+GFGFV F+ +D + A++TMNG+++ + L + A
Sbjct: 208 KFSSFGKIISLAV--AKDSNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQ 265
Query: 292 VKA 294
KA
Sbjct: 266 KKA 268
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 105 STSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
S+++D++ L+VG+L + M + L F G + S++V+ ++ T ++ G+ FV S
Sbjct: 87 SSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGT 146
Query: 165 AKEAIRMFDGSQVGG--RIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLG 222
A++ ++ + G + + R+N+ G K +N D I+ G+L
Sbjct: 147 AEKVLQTYAGMLMPNTEQPFRLNWATFSTGDH------KRSDNVPDL-----SIFVGDLA 195
Query: 223 WRVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
V+ L + F+++ P + +AKV+++ ++GRS+G+GFV F + AL MNGV
Sbjct: 196 ADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCS 255
Query: 282 GRELRLNLAAVK 293
R +R+ A +
Sbjct: 256 SRAMRIGAATPR 267
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 91/173 (52%), Gaps = 16/173 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L ++T SQL ++F + G VVSV V D T RS G+ +V + DA A+ +
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + + R +R+ + P IR + + I+ NL + + L D
Sbjct: 96 NFTPLNNRPIRIMYSH---------RDPSIRKSGQG------NIFIKNLDKAIDHKALHD 140
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
F+ ++S KV + SG+S+G+GFV F+T + + A++ +NG+ + +++
Sbjct: 141 TFSSFGNILSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQV 192
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 91/185 (49%), Gaps = 9/185 (4%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
++V NL S T +L + F E GT+ S VM D +S+ F FV S DDA A+
Sbjct: 215 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVEAL 273
Query: 173 DGSQVGGRIVRVNFPEVPKGGER-LVMGPKIRNNNRDFVDSSH--KIYAGNLGWRVSSQD 229
+G ++ + V + K ER + K + ++ D +Y NL ++ +
Sbjct: 274 NGKKIDDKEWYVG--KAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEK 331
Query: 230 LKDVFAEQPGLVSAKVIYERD-SGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
LK++F+ + S KV+ RD +G SRG GFV F T ++ AL MNG V + L +
Sbjct: 332 LKELFSSYGTITSCKVM--RDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVT 389
Query: 289 LAAVK 293
LA K
Sbjct: 390 LAQRK 394
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 19/185 (10%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL ++ L + F G ++S +V D + +S+G+ FV + + A++AI
Sbjct: 124 IFIKNLDKAIDHKALHDTFSSFGNILSCKVAVDG-SGQSKGYGFVQFDTEEAAQKAIEKL 182
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK---IYAGNLGWRVSSQD 229
+G + + V V GP +R R+ K ++ NL + +
Sbjct: 183 NGMLLNDKQVYV--------------GPFLRKQERESTGDRAKFNNVFVKNLSESTTDDE 228
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 289
LK F E G +++ V+ G+S+ FGFV FE+ D A++ +NG ++ +E +
Sbjct: 229 LKKTFGEF-GTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGK 287
Query: 290 AAVKA 294
A K+
Sbjct: 288 AQKKS 292
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 100/192 (52%), Gaps = 14/192 (7%)
Query: 105 STSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
S+++D++ L+VG+L + M + L F G + S++V+ ++ T ++ G+ FV S
Sbjct: 87 SSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGT 146
Query: 165 AKEAIRMFDGSQVGG--RIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLG 222
A++ ++ + G + + R+N+ G K +N D I+ G+L
Sbjct: 147 AEKVLQTYAGMLMPNTEQPFRLNWATFSTGDH------KRSDNVPDL-----SIFVGDLA 195
Query: 223 WRVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
V+ L + F+++ P + +AKV+++ ++GRS+G+GFV F + AL MNGV
Sbjct: 196 ADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCS 255
Query: 282 GRELRLNLAAVK 293
R +R+ A +
Sbjct: 256 SRAMRIGAATPR 267
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 8/192 (4%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEA-GTVVSVEVMYDRVTDRSRGFAFVTM 159
+ K S + D ++VG+L +T + L E F + +V + +V++D T RS+G+ FV
Sbjct: 177 DHKRSDNVPDLSIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDANTGRSKGYGFVRF 236
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK-IYA 218
G + +A+ +G R +R+ K G ++ DS++ I+
Sbjct: 237 GDDGERSKALNEMNGVFCSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFV 296
Query: 219 GNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
G L +++DL+ F++ +VS K+ +G GFV F + E AL+ +NG
Sbjct: 297 GGLDPSATAEDLRQPFSQYGEIVSVKIPV------GKGCGFVQFANRNNAEEALQKLNGT 350
Query: 279 EVQGRELRLNLA 290
V + +RL+
Sbjct: 351 TVGKQTVRLSWG 362
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 18/191 (9%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S R +YVGN+ ++T L E+F AG + ++ + + FV A
Sbjct: 56 ASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKL----IRKEKSSYGFVDYHDRASAA 111
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVS 226
AI G Q+ G+ ++VN+ N++R+ ++ G+L V+
Sbjct: 112 LAIMTLHGRQLYGQALKVNW--------------AYANSSREDTSGHFNVFVGDLSPEVT 157
Query: 227 SQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELR 286
L F+ A+V+++ +GRS+G+GFV+F QD ++A+ M G + R++R
Sbjct: 158 DATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIR 217
Query: 287 LNLAAVKAPSS 297
N A A S
Sbjct: 218 CNWATKGAGGS 228
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L F T VM+D T RS+G+ FV+ DA+
Sbjct: 141 TSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQ 200
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKGGER-------------LVMGPK---IRNNNRDFV 210
AI G +G R +R N+ GG L G N+N D
Sbjct: 201 SAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAP 260
Query: 211 D---SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
+ S +Y GNL V+ +L F + A V+ E +GFGFV + T ++
Sbjct: 261 ENNPSYTTVYVGNLPHDVTQAELHCQFHA----LGAGVLEEVRVQSGKGFGFVRYNTHEE 316
Query: 268 VEAALKTMNGVEVQGRELRLNLAAVKAP 295
A++ NG V+G+ ++ + + P
Sbjct: 317 AAMAIQMANGRPVRGKTMKCSWGSKPTP 344
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 18/191 (9%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S R +YVGN+ ++T L E+F AG + ++ + + FV A
Sbjct: 56 ASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKL----IRKEKSSYGFVDYHDRASAA 111
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVS 226
AI G Q+ G+ ++VN+ N++R+ ++ G+L V+
Sbjct: 112 LAIMTLHGRQLYGQALKVNW--------------AYANSSREDTSGHFNVFVGDLSPEVT 157
Query: 227 SQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELR 286
L F+ A+V+++ +GRS+G+GFV+F QD ++A+ M G + R++R
Sbjct: 158 DATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIR 217
Query: 287 LNLAAVKAPSS 297
N A A S
Sbjct: 218 CNWATKGAGGS 228
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L F T VM+D T RS+G+ FV+ DA+
Sbjct: 141 TSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQ 200
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKGGER-------------LVMGPK---IRNNNRDFV 210
AI G +G R +R N+ GG L G N+N D
Sbjct: 201 SAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAP 260
Query: 211 D---SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
+ S +Y GNL V+ +L F + A V+ E +GFGFV + T ++
Sbjct: 261 ENNPSYTTVYVGNLPHDVTQAELHCQFHA----LGAGVLEEVRVQSGKGFGFVRYNTHEE 316
Query: 268 VEAALKTMNGVEVQGRELRLNLAAVKAP 295
A++ NG V+G+ ++ + + P
Sbjct: 317 AAMAIQMANGRPVRGKTMKCSWGSKPTP 344
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 26/218 (11%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S R +YVGN+ +T L E+F G V ++ + + F+ A
Sbjct: 59 STCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAAL 114
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
AI +G + G+ ++VN+ + R+ + I+ G+L V+
Sbjct: 115 AILTLNGRHLFGQPIKVNW--------------AYASGQREDTSGHYNIFVGDLSPEVTD 160
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRL 287
L F+ A+V++++ +GRSRGFGFV+F + QD ++A+ + G + R++R
Sbjct: 161 ATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRC 220
Query: 288 NLAAVKAPS--------SPSVTEENEGSSVDTSELVSS 317
N A A S SV E GSS D E+ S+
Sbjct: 221 NWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSN 258
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 84/188 (44%), Gaps = 22/188 (11%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L F + VM+D+ T RSRGF FV+ S DA+
Sbjct: 143 TSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQ 202
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKGG--------ERLVM---------GPKIRNNNRDF 209
AI G +G R +R N+ GG + V+ G +I +N+
Sbjct: 203 SAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPE 262
Query: 210 VDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDV 268
+ + +Y GNLG + DL F + A VI E R +GFGFV + T +
Sbjct: 263 NNPQYTTVYVGNLGSEATQLDLHRHFHA----LGAGVIEEVRVQRDKGFGFVRYSTHAEA 318
Query: 269 EAALKTMN 276
A++ N
Sbjct: 319 ALAIQMGN 326
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 18/191 (9%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S R +YVGN+ ++T L E+F AG + ++ + + FV A
Sbjct: 40 ASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKL----IRKEKSSYGFVDYHDRASAA 95
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVS 226
AI G Q+ G+ ++VN+ N++R+ ++ G+L V+
Sbjct: 96 LAIMTLHGRQLYGQALKVNW--------------AYANSSREDTSGHFNVFVGDLSPEVT 141
Query: 227 SQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELR 286
L F+ A+V+++ +GRS+G+GFV+F QD ++A+ M G + R++R
Sbjct: 142 DATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIR 201
Query: 287 LNLAAVKAPSS 297
N A A S
Sbjct: 202 CNWATKGAGGS 212
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 23/208 (11%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L F T VM+D T RS+G+ FV+ DA+
Sbjct: 125 TSGHFNVFVGDLSPEVTDATLFACFSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQ 184
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKGGER-------------LVMGPK---IRNNNRDFV 210
AI G +G R +R N+ GG L G N+N D
Sbjct: 185 SAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAP 244
Query: 211 D---SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
+ S +Y GNL V+ +L F + A V+ E +GFGFV + T ++
Sbjct: 245 ENNPSYTTVYVGNLPHDVTQAELHCQFHA----LGAGVLEEVRVQSGKGFGFVRYNTHEE 300
Query: 268 VEAALKTMNGVEVQGRELRLNLAAVKAP 295
A++ NG V+G+ ++ + + P
Sbjct: 301 AAMAIQMANGRPVRGKTMKCSWGSKPTP 328
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 26/218 (11%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
SS R +YVGN+ ++ L E+F AG + ++ + + FV A
Sbjct: 42 SSTCRSVYVGNIHPQVSEPLLQELFSSAGALEGCKL----IRKEKSSYGFVDYFDRSSAA 97
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVS 226
AI +G + G+ ++VN+ R+ I+ G+L V+
Sbjct: 98 IAIVTLNGRNIFGQSIKVNW--------------AYTRGQREDTSGHFHIFVGDLSPEVT 143
Query: 227 SQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELR 286
L F+ A+V++++ +GRSRGFGFV+F Q+ ++A+ + G + R++R
Sbjct: 144 DATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIR 203
Query: 287 LNLAAVKA--------PSSPSVTEENEGSSVDTSELVS 316
N A A S SV E G+S + E+ S
Sbjct: 204 CNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTS 241
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 87/209 (41%), Gaps = 26/209 (12%)
Query: 107 SSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAK 166
+S ++VG+L +T + L F + VM+D+ T RSRGF FV+ + +A+
Sbjct: 127 TSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQ 186
Query: 167 EAIRMFDGSQVGGRIVRVNFPEVPKG----GE----------RLVMGPKIRNNNRDFVDS 212
AI G +G R +R N+ KG GE L G DS
Sbjct: 187 SAINDLTGKWLGSRQIRCNW--ATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDS 244
Query: 213 SHK------IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ 266
K +Y GNL V+S DL F + I + R +GFGFV + T
Sbjct: 245 PEKNPQYTTVYVGNLAPEVTSVDLHHHFHA----LGVGTIEDVRVQRDKGFGFVRYSTHG 300
Query: 267 DVEAALKTMNGVEVQGRELRLNLAAVKAP 295
+ A++ N + G+ ++ + + P
Sbjct: 301 EAALAIQMGNTRFLFGKPIKCSWGSKPTP 329
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 15/206 (7%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
++ +++ L++G+L M S L F G + SV+V+ ++ + S G+ F S A
Sbjct: 92 SNGENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATA 151
Query: 166 KEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGW 223
++ ++ + G + + R+N+ G K +N D I+ G+L
Sbjct: 152 EKVLQNYAGILMPNADQAFRLNW-------ATFSTGDKGSDNVTDL-----SIFVGDLAA 199
Query: 224 RVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 282
V+ L + F+ P + +AKV+Y+ ++GRS+G+GFV F + A+ MNGV
Sbjct: 200 DVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSS 259
Query: 283 RELRLNLAAVKAPSSPSVTEENEGSS 308
R +R+ A + S ++ G+S
Sbjct: 260 RPMRIGAATPRKSSGHQPGGQSNGTS 285
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 86/170 (50%), Gaps = 24/170 (14%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L + +T SQL ++F + G VVSV + D + +S G+ +V + DA +A+ +
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 173 DGSQVGGRIVRVNF----PEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ + + + +R+ + P V K G + I+ NL + +
Sbjct: 86 NFTPLNNKPIRIMYSHRDPSVRKSG-------------------AANIFIKNLDRAIDHK 126
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
L D F+ ++S K+ + SG S+G+GFV FE + ++A+ +NG+
Sbjct: 127 ALYDTFSIFGNILSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGM 175
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 92/185 (49%), Gaps = 9/185 (4%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NL S+T L F E GT+ S VM D V +S+ F FV + D A EA+
Sbjct: 205 VYVKNLSESVTDDDLKNTFGEYGTITSAVVMRD-VDGKSKCFGFVNFENADAAAEAVEAL 263
Query: 173 DGSQVGGRIVRVNFPEVPKGGER-LVMGPKIRNNNRDFVDSSH--KIYAGNLGWRVSSQD 229
+G + + V + K ER L + + + ++ VD + +Y NL V+ +
Sbjct: 264 NGKKFDDKEWYVG--KALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEK 321
Query: 230 LKDVFAEQPGLVSAKVIYERD-SGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
L ++F+E + S K++ RD G SRG GFV F T ++ AL MNG V G+ L +
Sbjct: 322 LSELFSEFGTVTSCKIL--RDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVA 379
Query: 289 LAAVK 293
A K
Sbjct: 380 PAQKK 384
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 93/202 (46%), Gaps = 19/202 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL ++ L + F G ++S ++ D + S+G+ FV + + A+ AI
Sbjct: 114 IFIKNLDRAIDHKALYDTFSIFGNILSCKIAMD-ASGLSKGYGFVQFENEESAQSAIDKL 172
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK---IYAGNLGWRVSSQD 229
+G + + V V G R +RD S+ K +Y NL V+ D
Sbjct: 173 NGMLLNDKPVYV--------------GHFQRKQDRDNALSNAKFNNVYVKNLSESVTDDD 218
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 289
LK+ F E + SA V+ + D G+S+ FGFV FE A A++ +NG + +E +
Sbjct: 219 LKNTFGEYGTITSAVVMRDVD-GKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGK 277
Query: 290 AAVKAPSSPSVTEENEGSSVDT 311
A K + E +E S +T
Sbjct: 278 ALKKYERELELKERHEQSMKET 299
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 15/206 (7%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
++ +++ L++G+L M S L F G + SV+V+ ++ + S G+ F S A
Sbjct: 92 SNGENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATA 151
Query: 166 KEAIRMFDGSQV--GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGW 223
++ ++ + G + + R+N+ G K +N D I+ G+L
Sbjct: 152 EKVLQNYAGILMPNADQAFRLNW-------ATFSTGDKGSDNVTDL-----SIFVGDLAA 199
Query: 224 RVSSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQG 282
V+ L + F+ P + +AKV+Y+ ++GRS+G+GFV F + A+ MNGV
Sbjct: 200 DVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSS 259
Query: 283 RELRLNLAAVKAPSSPSVTEENEGSS 308
R +R+ A + S ++ G+S
Sbjct: 260 RPMRIGAATPRKSSGHQPGGQSNGTS 285
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 90/190 (47%), Gaps = 8/190 (4%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEA-GTVVSVEVMYDRVTDRSRGFAFVTMGS 161
K S + D ++VG+L +T S L E F + +V + +V+YD T RS+G+ FV G
Sbjct: 182 KGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGD 241
Query: 162 VDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK-IYAGN 220
+ +A+ +G R +R+ K G +++ DS++ I+ G
Sbjct: 242 ESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPGGQSNGTSSQSEADSTNTTIFVGG 301
Query: 221 LGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
L V+ +DLK F++ + S K+ +G GFV F + E AL+ +NG +
Sbjct: 302 LDSNVTDEDLKQTFSQYGEIASVKIPV------GKGCGFVQFANRNNAEEALQKLNGTMI 355
Query: 281 QGRELRLNLA 290
+ +RL+
Sbjct: 356 GKQTVRLSWG 365
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 99/211 (46%), Gaps = 32/211 (15%)
Query: 80 RQDNPEPEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVS 139
+ P P P P Q V+TS LYVG+L ++ SQL ++F + G VVS
Sbjct: 7 QHQTPAPVPAPSNGVVPN-VANQFVTTS-----LYVGDLEVNVNDSQLYDLFNQVGQVVS 60
Query: 140 VEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMG 199
V V D T RS G+ +V + DA A+ + + + + + +RV +
Sbjct: 61 VRVCRDLATRRSLGYGYVNFTNPQDAARALDVLNFTPMNNKSIRVMY------------- 107
Query: 200 PKIRNNNRDFVDSSHK-----IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRS 254
++RD SS K I+ NL + + L D F+ ++S K+ + SG+S
Sbjct: 108 -----SHRD--PSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATD-GSGQS 159
Query: 255 RGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
+G+GFV FE + A+ +NG+ + +++
Sbjct: 160 KGYGFVQFEAEDSAQNAIDKLNGMLINDKQV 190
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 91/193 (47%), Gaps = 19/193 (9%)
Query: 105 STSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
S S +++ NL ++ L + F G ++S ++ D + +S+G+ FV + D
Sbjct: 114 SRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIATDG-SGQSKGYGFVQFEAEDS 172
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK---IYAGNL 221
A+ AI +G + + V V G +R +RD V S K +Y NL
Sbjct: 173 AQNAIDKLNGMLINDKQVFV--------------GHFLRKQDRDNVLSKTKFNNVYVKNL 218
Query: 222 GWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
+ DLK+ F G +++ V+ GRS+ FGFV FE A+D A++ +NG +V
Sbjct: 219 SESFTEDDLKNEFGAY-GTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNGKKVD 277
Query: 282 GRELRLNLAAVKA 294
+E + A K+
Sbjct: 278 DKEWYVGKAQKKS 290
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 95/200 (47%), Gaps = 6/200 (3%)
Query: 97 QQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAF 156
++++ V + + +YV NL S T L F GT+ S +M D RS+ F F
Sbjct: 197 RKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRD-ADGRSKCFGF 255
Query: 157 VTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH-- 214
V + +DA +A+ +G +V + V + E+ + G + VD
Sbjct: 256 VNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGL 315
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERD-SGRSRGFGFVTFETAQDVEAALK 273
+Y NL ++ + LK++F+E + S K++ RD +G SRG GFV F T ++ AL
Sbjct: 316 NLYLKNLDDSITDEKLKEMFSEFGTITSYKIM--RDPNGVSRGSGFVAFSTPEEASRALG 373
Query: 274 TMNGVEVQGRELRLNLAAVK 293
MNG + + L + +A K
Sbjct: 374 EMNGKMIVSKPLYVAVAQRK 393
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 212 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 271
SS K++ G + + L++ F+ ++ AK+I +RD+GRSRGFGF+TF T+++ +A
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSA 97
Query: 272 LKTMNGVEVQGRELRLNLAAVKA 294
L+ M+ E+ GR +R+N A +A
Sbjct: 98 LQAMDNKELDGRTVRVNYATERA 120
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G + YS + L E F G V+ +++ DR T RSRGF F+T + ++A A++
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 172 FDGSQVGGRIVRVNF 186
D ++ GR VRVN+
Sbjct: 101 MDNKELDGRTVRVNY 115
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 55/83 (66%)
Query: 212 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 271
SS K++ G + + L++ F+ ++ AK+I +RD+GRSRGFGF+TF T+++ +A
Sbjct: 38 SSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSA 97
Query: 272 LKTMNGVEVQGRELRLNLAAVKA 294
L+ M+ E+ GR +R+N A +A
Sbjct: 98 LQAMDNKELDGRTVRVNYATERA 120
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G + YS + L E F G V+ +++ DR T RSRGF F+T + ++A A++
Sbjct: 41 KLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQA 100
Query: 172 FDGSQVGGRIVRVNF 186
D ++ GR VRVN+
Sbjct: 101 MDNKELDGRTVRVNY 115
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +++G+L + M + L F G V S +V+ ++ T +S G+ FV + A++ ++
Sbjct: 116 RTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQ 175
Query: 171 MFDGSQV-----GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRV 225
F+G+ + R+ F GGER R++ S ++ G+L V
Sbjct: 176 NFNGTMMPNTDQAFRLNWATFSAAGGGGER-------RSSE---ATSDLSVFVGDLAIDV 225
Query: 226 SSQDLKDVFAEQ-PGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRE 284
+ L++ FA + + AKV+ + ++GRS+G+GFV F + A+ MNGV R
Sbjct: 226 TDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRP 285
Query: 285 LRLNLAAVK 293
+R+ +A K
Sbjct: 286 MRVGVATPK 294
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 23/207 (11%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFV-EAGTVVSVEVMYDRVTDRSRGFAFVTM 159
E++ S ++ D ++VG+L +T + L E F + ++ +V+ D T RS+G+ FV
Sbjct: 204 ERRSSEATSDLSVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRF 263
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNF---------PE-------VPKGGERLVMGPKIR 203
G + A+ +G R +RV P+ V GG G +
Sbjct: 264 GDESERTRAMTEMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQ 323
Query: 204 NNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFE 263
+ + ++ I+ G L +S +DL+ F + ++S K+ +G GFV
Sbjct: 324 GSQSEGDSNNTTIFVGGLDSDISDEDLRQPFLQFGDVISVKIPV------GKGCGFVQLA 377
Query: 264 TAQDVEAALKTMNGVEVQGRELRLNLA 290
++ E A++ +NG + + +RL+
Sbjct: 378 DRKNAEEAIQGLNGTVIGKQTVRLSWG 404
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%)
Query: 212 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 271
SS K+Y G + + L++ FA ++ A+VI +R+ GRS+GFGFVTF T+++ AA
Sbjct: 38 SSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAA 97
Query: 272 LKTMNGVEVQGRELRLNLA 290
L+ M+ E+ GR +R+N A
Sbjct: 98 LQAMDNQELHGRTVRVNYA 116
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+LYVG + YS + L E F G V+ V+ DR RS+GF FVT + ++A A++
Sbjct: 41 KLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQA 100
Query: 172 FDGSQVGGRIVRVNFPE 188
D ++ GR VRVN+ +
Sbjct: 101 MDNQELHGRTVRVNYAQ 117
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 21/190 (11%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS---VDDAKEA 168
++++G L T +Q + F + G + +M DR T + RGF F+T VD E
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIED 105
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ + QV I R +P+G +G K DF + KI+ G + V+
Sbjct: 106 SHIINSKQV--EIKRT----IPRG----AVGSK------DF--RTKKIFVGGIPSNVTED 147
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
+ +D F + +++ + + RSRGFGFVTF+T + V+ L N +E G ++ +
Sbjct: 148 EFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIK 207
Query: 289 LAAVKAPSSP 298
A K ++P
Sbjct: 208 KAEPKKANAP 217
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W V + LKD F+ + +++Y++DSGR+RGFGFV F ++A
Sbjct: 37 KLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDA 96
Query: 275 MNGVEVQGRELRLNLAAVKAPSSPSVT 301
M+G + GR LR+N A K P V
Sbjct: 97 MDGKALLGRPLRINFALEKPRGIPVVV 123
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 54/101 (53%), Gaps = 1/101 (0%)
Query: 93 SDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSR 152
S PQ S+S+ +L+VG L +S+ L + F G V V ++YD+ + R+R
Sbjct: 18 SSHPQFRFFNSSSSSASSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRAR 77
Query: 153 GFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFP-EVPKG 192
GF FV + D AK A DG + GR +R+NF E P+G
Sbjct: 78 GFGFVIFSNEDAAKSAKDAMDGKALLGRPLRINFALEKPRG 118
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 16/173 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L S+ QL ++F + VVS+ V D+ S G+A+V + DA A +
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + + + +R+ F + P +R + S ++ NL + + L D
Sbjct: 92 NFTPLNEKPIRIMFSQ---------RDPSVRKS------GSGNVFIKNLDTSIDHKALHD 136
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
FA ++S KV + +G+S+G+GFV F+ + ++A+K ++G+ + +++
Sbjct: 137 TFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQV 188
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL S+ L + F G V+S +V D +S+G+ FV + + AK AI+
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK---IYAGNLGWRVSSQD 229
DG + + V V F +R+ R + S K +Y N+ + +D
Sbjct: 179 DGMLINDKQVYVGF--------------FVRHQERARTNGSPKFTNVYVKNISEASTDED 224
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
LK +F G++++ + + +G+SR FGFV F++ AA++ +NG +
Sbjct: 225 LKQLFGPF-GMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAI 274
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 97 QQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAF 156
+ +E + + S +YV N+ + T L ++F G + S VM D +SR F F
Sbjct: 195 RHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGF 253
Query: 157 VTMGSVDDAKEAIRMFDGSQVG-------GRIVRV----NFPEVPKGGERLVMGPKIRNN 205
V S D A A+ +G+ + GR R N + ER+ K++
Sbjct: 254 VNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGA 313
Query: 206 NRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETA 265
N +Y NL + + LKD+F+E + S +V+ + G S+G GFV F T
Sbjct: 314 N---------LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTP 363
Query: 266 QDVEAALKTMNGVEVQGRELRLNLAAVK 293
++ AL MNG V + L + +A K
Sbjct: 364 EEANKALNEMNGKLVGRKPLFVAVAQRK 391
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 16/173 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L S+ QL ++F + VVS+ V D+ S G+A+V + DA A +
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + + + +R+ F + P +R + S ++ NL + + L D
Sbjct: 92 NFTPLNEKPIRIMFSQ---------RDPSVRKS------GSGNVFIKNLDTSIDHKALHD 136
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
FA ++S KV + +G+S+G+GFV F+ + ++A+K ++G+ + +++
Sbjct: 137 TFAAFGPVLSCKVALD-GNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQV 188
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+++ NL S+ L + F G V+S +V D +S+G+ FV + + AK AI+
Sbjct: 120 VFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDG-NGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHK---IYAGNLGWRVSSQD 229
DG + + V V F +R+ R + S K +Y N+ + +D
Sbjct: 179 DGMLINDKQVYVGF--------------FVRHQERARTNGSPKFTNVYVKNISEASTDED 224
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEV 280
LK +F G++++ + + +G+SR FGFV F++ AA++ +NG +
Sbjct: 225 LKQLFGPF-GMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNGTAI 274
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 97 QQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAF 156
+ +E + + S +YV N+ + T L ++F G + S VM D +SR F F
Sbjct: 195 RHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATVMKD-ANGKSRCFGF 253
Query: 157 VTMGSVDDAKEAIRMFDGSQVG-------GRIVRV----NFPEVPKGGERLVMGPKIRNN 205
V S D A A+ +G+ + GR R N + ER+ K++
Sbjct: 254 VNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGA 313
Query: 206 NRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETA 265
N +Y NL + + LKD+F+E + S +V+ + G S+G GFV F T
Sbjct: 314 N---------LYLKNLDDDFNEEKLKDLFSEFGTVTSCRVMLD-SHGHSKGSGFVAFSTP 363
Query: 266 QDVEAALKTMNGVEVQGRELRLNLAAVK 293
++ AL MNG V + L + +A K
Sbjct: 364 EEANKALNEMNGKLVGRKPLFVAVAQRK 391
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 6/187 (3%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + +L E F G V +M DR T R+RGF FV +D A
Sbjct: 3 SDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF--IDPAVA 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
I + + + GR+V VP+ + ++ + + KI+ G L V+
Sbjct: 61 DIVVQEKHNIDGRMVEAK-KAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTE 119
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDV-EAALKTMNGVEVQGRELR 286
D K F + + V+Y+ ++ R RGFGF+T+++ + V + LKT + E+ G+ +
Sbjct: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFH--ELNGKMVE 177
Query: 287 LNLAAVK 293
+ A K
Sbjct: 178 VKRAVPK 184
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 90/187 (48%), Gaps = 6/187 (3%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + +L E F G V +M DR T R+RGF FV +D A
Sbjct: 3 SDSGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVF--IDPAVA 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
I + + + GR+V VP+ + ++ + + KI+ G L V+
Sbjct: 61 DIVVQEKHNIDGRMVEAK-KAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTE 119
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDV-EAALKTMNGVEVQGRELR 286
D K F + + V+Y+ ++ R RGFGF+T+++ + V + LKT + E+ G+ +
Sbjct: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFH--ELNGKMVE 177
Query: 287 LNLAAVK 293
+ A K
Sbjct: 178 VKRAVPK 184
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 96 PQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFA 155
P + + S+ +L++G + YS + L E F G V+ ++ DR T RSRGF
Sbjct: 27 PSALQAIRCMCSAPTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFG 86
Query: 156 FVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFP-EVPK 191
F+T SV++A AI+ DG + GR VRVN+ E P+
Sbjct: 87 FITFNSVEEASSAIQALDGQDLHGRRVRVNYANERPR 123
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 51/76 (67%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G + + L++ F+ ++ A++I +R++GRSRGFGF+TF + ++ +A++
Sbjct: 43 KLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 102
Query: 275 MNGVEVQGRELRLNLA 290
++G ++ GR +R+N A
Sbjct: 103 LDGQDLHGRRVRVNYA 118
>Medtr7g118230.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49069532-49073325 | 20130731
Length = 345
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 83/174 (47%), Gaps = 36/174 (20%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
++YV NLP S + L +F GTV+S EV + T S+G A+VTMGS + AK A+
Sbjct: 44 QVYVCNLPRSCDTHHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNALAA 103
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
DGS VGGR + V F + P +R + + HK+Y GNL W
Sbjct: 104 LDGSDVGGREMLVKF------SVETLNSPPMRRRT-IYYEGPHKVYVGNL-W-------- 147
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
+SR + FV++ + ++ +A++ ++NG E GR L
Sbjct: 148 -------------------GKKSRVYAFVSYLSQRERDASM-SLNGTEFCGRTL 181
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 26/197 (13%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D +L++G + + +L + F G VV +M DR T R+RGF FV A+
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH-----------KIY 217
+ + + GR V VP+ + + R+N+ SSH KI+
Sbjct: 62 V--MEKHVIDGRTVEAK-KAVPRDDQNVF----TRSNS-----SSHGSPAPTPIRTKKIF 109
Query: 218 AGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMN 276
G L V+ D K+ F + + V+Y+ ++ R RGFGF+T+++ + VE L KT +
Sbjct: 110 VGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH 169
Query: 277 GVEVQGRELRLNLAAVK 293
E+ G+ + + A K
Sbjct: 170 --ELNGKMVEVKRAVPK 184
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 26/197 (13%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D +L++G + + +L + F G VV +M DR T R+RGF FV A+
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH-----------KIY 217
+ + + GR V VP+ + + R+N+ SSH KI+
Sbjct: 62 V--MEKHVIDGRTVEAK-KAVPRDDQNVF----TRSNS-----SSHGSPAPTPIRTKKIF 109
Query: 218 AGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMN 276
G L V+ D K+ F + + V+Y+ ++ R RGFGF+T+++ + VE L KT +
Sbjct: 110 VGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH 169
Query: 277 GVEVQGRELRLNLAAVK 293
E+ G+ + + A K
Sbjct: 170 --ELNGKMVEVKRAVPK 184
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 26/197 (13%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
D +L++G + + +L + F G VV +M DR T R+RGF FV A+
Sbjct: 2 DPGKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERV 61
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH-----------KIY 217
+ + + GR V VP+ + + R+N+ SSH KI+
Sbjct: 62 V--MEKHVIDGRTVEAK-KAVPRDDQNVF----TRSNS-----SSHGSPAPTPIRTKKIF 109
Query: 218 AGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMN 276
G L V+ D K+ F + + V+Y+ ++ R RGFGF+T+++ + VE L KT +
Sbjct: 110 VGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH 169
Query: 277 GVEVQGRELRLNLAAVK 293
E+ G+ + + A K
Sbjct: 170 --ELNGKMVEVKRAVPK 184
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
D ++ + G L W ++ L+ F++ +V +K+I +R++GRSRGFGFVTF + +
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 271 ALKTMNGVEVQGRELRLNLA 290
A++ MNG ++ GR + +N A
Sbjct: 63 AIEAMNGQDLDGRNITVNQA 82
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ + L + F + G +V +++ DR T RSRGF FVT + +AI
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 172 FDGSQVGGRIVRVN 185
+G + GR + VN
Sbjct: 67 MNGQDLDGRNITVN 80
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
D ++ + G L W ++ L+ F++ +V +K+I +R++GRSRGFGFVTF + +
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 271 ALKTMNGVEVQGRELRLNLA 290
A++ MNG ++ GR + +N A
Sbjct: 63 AIEAMNGQDLDGRNITVNQA 82
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ + L + F + G +V +++ DR T RSRGF FVT + +AI
Sbjct: 7 RCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEA 66
Query: 172 FDGSQVGGRIVRVN 185
+G + GR + VN
Sbjct: 67 MNGQDLDGRNITVN 80
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
D ++ + G L W SQ L+ F++ + +KVI +R++GRSRGFGFVTF + +
Sbjct: 5 DVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRD 64
Query: 271 ALKTMNGVEVQGRELRLNLA 290
A++ MNG ++ GR + +N A
Sbjct: 65 AIEEMNGQDIDGRNITVNEA 84
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ S L + F + G + +V+ DR T RSRGF FVT ++AI
Sbjct: 9 RCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEE 68
Query: 172 FDGSQVGGRIVRVN 185
+G + GR + VN
Sbjct: 69 MNGQDIDGRNITVN 82
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
D ++ + G L W S+ L+ F++ ++ +K+I +R++GRSRGFGFVTF + +
Sbjct: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
Query: 270 AALKTMNGVEVQGRELRLNLA 290
A++ MNG ++ GR + +N A
Sbjct: 64 DAIEGMNGQDMDGRNITVNEA 84
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
R +VG L ++ S L + F + G ++ +++ DR T RSRGF FVT ++AI
Sbjct: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
Query: 172 FDGSQVGGRIVRVN 185
+G + GR + VN
Sbjct: 69 MNGQDMDGRNITVN 82
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 49/88 (55%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S R ++VGN+PY T QL EI E G V+S ++ DR T + +G+ F + A
Sbjct: 26 SQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALS 85
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGER 195
A R G ++ GR +RV+F E KG +R
Sbjct: 86 ARRNLQGYEINGRQLRVDFAENDKGNDR 113
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 208 DFV---DSSHK-IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFE 263
DF+ S H+ ++ GN+ + + + LK++ E ++S +++ +R++G+ +G+GF +
Sbjct: 19 DFMAAPQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYT 78
Query: 264 TAQDVEAALKTMNGVEVQGRELRLNLA 290
+ +A + + G E+ GR+LR++ A
Sbjct: 79 DEETALSARRNLQGYEINGRQLRVDFA 105
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 212 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 271
SS K++ G L + V Q L+D F +V A+VI +R++GRSRGFGFV F + + +A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 272 LKTMNGVEVQGRELRLNLA 290
L +M+G ++ GR +R++ A
Sbjct: 94 L-SMDGQDLNGRNIRVSYA 111
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L++G L Y++ L + F G VV V+ DR T RSRGF FV S + A A+ M
Sbjct: 37 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSM 96
Query: 172 FDGSQVGGRIVRVNFP 187
DG + GR +RV++
Sbjct: 97 -DGQDLNGRNIRVSYA 111
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 21/185 (11%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS---VDDAKEA 168
++++G L T + + F G + +M DR T R RGF F+T VD +
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQE 78
Query: 169 IRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
+ + QV I R +PKG + DF + KI+ G + VS
Sbjct: 79 NHIINDKQV--EIKRT----IPKGASQ----------TNDF--KTKKIFVGGIPATVSED 120
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN 288
+LK F++ +V ++I + + RSRGFGFV F++ + V+ L N +++ ++ +
Sbjct: 121 ELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIK 180
Query: 289 LAAVK 293
A K
Sbjct: 181 KAEPK 185
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 93/190 (48%), Gaps = 17/190 (8%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG+L ++ +QL ++F + V+SV V D++T S G+ +V + DA A+
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ + G+ +R+ F P IR F + ++ NL + ++ L +
Sbjct: 87 NYVPLNGKPIRIMFSH---------RDPLIRKTG--FAN----LFIKNLETSIDNKALHE 131
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLN-LAA 291
F+ ++S KV + + G S+G GFV F+ Q + A++ ++G+ + +++ +
Sbjct: 132 TFSVFGNVLSCKVAMDSN-GHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVR 190
Query: 292 VKAPSSPSVT 301
+ SSP T
Sbjct: 191 CQERSSPKFT 200
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 17/165 (10%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L++ NL S+ + L E F G V+S +V D S+G FV + AK AI
Sbjct: 115 LFIKNLETSIDNKALHETFSVFGNVLSCKVAMDS-NGHSKGHGFVQFDNDQSAKNAIEKL 173
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
DG + + V V + + ER PK N +Y NL + +DLK
Sbjct: 174 DGMLMNDKKVYVGY--FVRCQER--SSPKFTN-----------VYVKNLSESYTYEDLKQ 218
Query: 233 VFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
+F G++++ +I + D+G S+ FGFV F+++ A++ +NG
Sbjct: 219 LF-NSFGVITSVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNG 262
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 92/189 (48%), Gaps = 16/189 (8%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVM-YDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+YV NL S T L ++F G + SV +M YD S+ F FV S D A A+
Sbjct: 202 VYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYD--NGNSKCFGFVNFQSSDSAATAVEK 259
Query: 172 FDGSQVG-GRIVRVNFPEVPKGGER------LVMGPKIRNNNRDFVDSSHKIYAGNLGWR 224
+GS G+++ V K ER K++ + F ++ +Y N+
Sbjct: 260 LNGSTTNDGKVLFVG--RAQKKSEREAELKAFFEQEKLKRYEK-FQGAN--LYLKNIDKS 314
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRE 284
++ + LK++F+E + S KV+ + GRS+G GFV F T ++ A+ MNG + +
Sbjct: 315 LNEEKLKELFSEFGTITSCKVMSDA-RGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKP 373
Query: 285 LRLNLAAVK 293
+ +++A K
Sbjct: 374 VYVSVAQRK 382
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 91/179 (50%), Gaps = 13/179 (7%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
++YVG +PY + + F GT+ + M T + RG A ++ + AK A+ +
Sbjct: 221 KVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRALAL 280
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
DG+ +GG +++ + K + P+++ + ++IY G+L W ++ ++L+
Sbjct: 281 -DGADMGGLFLKI---QPCKATQATRFTPEMK-------EGYNRIYVGSLSWEITEEELR 329
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
F+ + + ++ ++++G RG+ V F +Q ++ AL V + GR +R++ A
Sbjct: 330 KFFS-NCNVKAIRLGMDKETGEFRGYAHVDFGDSQSLKTALALDQSV-LFGRPVRISCA 386
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 19/170 (11%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG++P + T + +F E G VV V ++ DR T + +G F+ + ++A +AIR
Sbjct: 89 KLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRA 148
Query: 172 FDGSQV---GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQ 228
G ++V + + GER +G +K++ G+L + S +
Sbjct: 149 LHNRHTLPGGVGPIQVRYAD----GERERLG-----------AVEYKLFVGSLNKQASVK 193
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV 278
++++VF++ G + + D +SRG GFV + AA+ +NG+
Sbjct: 194 EVEEVFSKY-GRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGI 242
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 51/76 (67%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G + + Q L D F++ ++ A++I +R+SGRS+GFGFVT+ T ++ +A++
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 275 MNGVEVQGRELRLNLA 290
++G ++ GR + +N A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
+S+ + +L+VG + Y+ L++ F + G V+ ++ DR + RS+GF FVT +V++A
Sbjct: 39 SSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEA 98
Query: 166 KEAIRMFDGSQVGGRIVRVNF 186
AI+ DG + GR V VNF
Sbjct: 99 SSAIQALDGQDLYGRRVGVNF 119
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 51/76 (67%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G + + Q L D F++ ++ A++I +R+SGRS+GFGFVT+ T ++ +A++
Sbjct: 45 KLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQA 104
Query: 275 MNGVEVQGRELRLNLA 290
++G ++ GR + +N A
Sbjct: 105 LDGQDLYGRRVGVNFA 120
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
+S+ + +L+VG + Y+ L++ F + G V+ ++ DR + RS+GF FVT +V++A
Sbjct: 39 SSTPNTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEA 98
Query: 166 KEAIRMFDGSQVGGRIVRVNF 186
AI+ DG + GR V VNF
Sbjct: 99 SSAIQALDGQDLYGRRVGVNF 119
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAI 169
DR+LYVGNL ++MT SQL EIF GTV V++ D T +GF F+ ++ AK A
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQ 375
Query: 170 RMFDGSQVGGRIVRVN 185
+ ++ GR ++V+
Sbjct: 376 SLNGKLEIAGRTIKVS 391
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
E + D R ++ +P T + E F +AG V V ++ DR + RS+G ++
Sbjct: 205 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 264
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG--------GERLVMGPKIRNNNRDFVDS 212
AI + G + G+ V V E K G V+GP +
Sbjct: 265 DAMSVPMAIAL-SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP--------YGAV 315
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
K+Y GNL + ++ L+++F + ++ + ++G +GFGF+ F + +AA
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA- 374
Query: 273 KTMNG-VEVQGRELRLNLAA 291
+++NG +E+ GR ++++ A
Sbjct: 375 QSLNGKLEIAGRTIKVSSVA 394
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAI 169
DR+LYVGNL ++MT SQL EIF GTV V++ D T +GF F+ ++ AK A
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQ 375
Query: 170 RMFDGSQVGGRIVRVN 185
+ ++ GR ++V+
Sbjct: 376 SLNGKLEIAGRTIKVS 391
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
E + D R ++ +P T + E F +AG V V ++ DR + RS+G ++
Sbjct: 205 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 264
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG--------GERLVMGPKIRNNNRDFVDS 212
AI + G + G+ V V E K G V+GP +
Sbjct: 265 DAMSVPMAIAL-SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP--------YGAV 315
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
K+Y GNL + ++ L+++F + ++ + ++G +GFGF+ F + +AA
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA- 374
Query: 273 KTMNG-VEVQGRELRLNLAA 291
+++NG +E+ GR ++++ A
Sbjct: 375 QSLNGKLEIAGRTIKVSSVA 394
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%)
Query: 110 DRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAI 169
DR+LYVGNL ++MT SQL EIF GTV V++ D T +GF F+ ++ AK A
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAAQ 375
Query: 170 RMFDGSQVGGRIVRVN 185
+ ++ GR ++V+
Sbjct: 376 SLNGKLEIAGRTIKVS 391
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 92/200 (46%), Gaps = 19/200 (9%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
E + D R ++ +P T + E F +AG V V ++ DR + RS+G ++
Sbjct: 205 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 264
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG--------GERLVMGPKIRNNNRDFVDS 212
AI + G + G+ V V E K G V+GP +
Sbjct: 265 DAMSVPMAIAL-SGQLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGP--------YGAV 315
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
K+Y GNL + ++ L+++F + ++ + ++G +GFGF+ F + +AA
Sbjct: 316 DRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAKAA- 374
Query: 273 KTMNG-VEVQGRELRLNLAA 291
+++NG +E+ GR ++++ A
Sbjct: 375 QSLNGKLEIAGRTIKVSSVA 394
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 83/166 (50%), Gaps = 16/166 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
++V NL S+ + L + F GTV+S +V D +S G+ FV + + AK AI
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDS-NGKSLGYGFVQYDNHESAKCAIEKL 75
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMG-PKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLK 231
DG + + V + + ER G PK N +Y NL + +DLK
Sbjct: 76 DGMLIKDKKAFVGY--FIRRQERSENGSPKFTN-----------VYVKNLLETDTDEDLK 122
Query: 232 DVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
+F+ G++++ VI + ++G S+ FGFV F++ AA++ +NG
Sbjct: 123 KLFSTY-GVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNG 167
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 32/197 (16%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+YV NL + T L ++F G + S +M D S+ F FV S D A A+
Sbjct: 107 VYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDE-NGNSKCFGFVNFQSPDSAAAAVEKL 165
Query: 173 DGSQVG-GRIV---------------RVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKI 216
+G+ G+++ R F + E++ K++ N +
Sbjct: 166 NGTTTNDGKVLYVGRAQRKCEREAELRAKFEQ-----EKIKRYEKLQGAN---------L 211
Query: 217 YAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMN 276
Y NL ++ + LK++F+E + S KV+++ G S+GFGFV F T+++ A+ M+
Sbjct: 212 YLKNLDESINDEKLKEMFSEFGTITSCKVMFDAH-GHSKGFGFVAFSTSEEASKAINGMS 270
Query: 277 GVEVQGRELRLNLAAVK 293
G + + L + +A K
Sbjct: 271 GKIIGQKPLYVVVAQRK 287
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
L V + YS + L E F G V+ ++ DR T RSRGF F+T SV++A AI+
Sbjct: 51 HLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQA 110
Query: 172 FDGSQVGGRIVRVNFP-EVPK 191
DG + GR VRVN+ E P+
Sbjct: 111 LDGQDLHGRRVRVNYANERPR 131
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 45/61 (73%)
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 289
L++ F+ ++ A++I +R++GRSRGFGF+TF + ++ +A++ ++G ++ GR +R+N
Sbjct: 66 LREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNY 125
Query: 290 A 290
A
Sbjct: 126 A 126
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 6/187 (3%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + +L E F G V+ +M DR T R+RGF FV D A
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVF--SDPAVA 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
+ D + GR V VP+ ++ + + KI+ G L ++
Sbjct: 61 ERVIIDKHIIDGRTVEAK-KAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITE 119
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNGVEVQGRELR 286
D K F + + V+Y+ ++ R RGFGF+T+++ + V+ L KT + E+ G+ +
Sbjct: 120 SDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFH--ELNGKMVE 177
Query: 287 LNLAAVK 293
+ A K
Sbjct: 178 VKRAVPK 184
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 6/187 (3%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L++G + + +L E F G V+ +M DR T R+RGF FV D A
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVF--SDPAVA 60
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
+ D + GR V VP+ ++ + + KI+ G L ++
Sbjct: 61 ERVIIDKHIIDGRTVEAK-KAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITE 119
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL-KTMNGVEVQGRELR 286
D K F + + V+Y+ ++ R RGFGF+T+++ + V+ L KT + E+ G+ +
Sbjct: 120 SDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFH--ELNGKMVE 177
Query: 287 LNLAAVK 293
+ A K
Sbjct: 178 VKRAVPK 184
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 100 EEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTM 159
+E+ S + + +L+VG +P MT +L +F E V V ++ D+ T SRG FV
Sbjct: 5 KEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVIC 64
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAG 219
S D+A +A+ + +P L +++ + + HK++ G
Sbjct: 65 PSRDEADKAVNACHNKKT-----------LPGASSPL----QVKYADGELERLEHKLFIG 109
Query: 220 NLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
L +S ++ +F++ G + I S+G F+ +ET + AAL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKY-GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 166
>Medtr1g036430.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:13375682-13364027 | 20130731
Length = 668
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 66/247 (26%), Positives = 110/247 (44%), Gaps = 48/247 (19%)
Query: 71 EVAQDSTDSR---QDNPE---------PEPETETSDKPQQEEEQKVSTSSDD---RRLYV 115
+V DS R +DNP+ E E + S+ Q+ E V+ + D + + V
Sbjct: 107 DVISDSDSHRSSGEDNPDDSESPEYIGEEVEEKVSEAHQERHETPVTINEKDAPSKTICV 166
Query: 116 GNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGS 175
NL YS+ + + +IF + G VV V DR R RGF +V G+ + AK+A+++ D +
Sbjct: 167 RNLSYSVERTDMEDIFKDCGEVVDVRFNTDR-EGRFRGFGYVEFGTAEAAKKALKL-DST 224
Query: 176 QVGGRIVRVN-------FP--------EVPKGGE-----RLVMG----------PKIRNN 205
++ R +RV+ +P V GG V G PK
Sbjct: 225 ELLNRRMRVDIAIEKSGYPPCRSNLSSSVHTGGNLQSHPHTVKGVVDASIVENKPKSPAT 284
Query: 206 NRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETA 265
+ +S IY NL + V D++++F + +V ++ +R+ G+ +G V F TA
Sbjct: 285 PNETNVASKTIYVRNLSYTVERSDMENIFKDCGEIVDIRLHTDRE-GKFKGHAHVQFATA 343
Query: 266 QDVEAAL 272
+ AL
Sbjct: 344 DAAQKAL 350
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
S I NL + V D++D+F + +V + +R+ GR RGFG+V F TA+ + AL
Sbjct: 161 SKTICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDRE-GRFRGFGYVEFGTAEAAKKAL 219
Query: 273 KTMNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSSVDT 311
K ++ E+ R +R+++A K+ P + N SSV T
Sbjct: 220 K-LDSTELLNRRMRVDIAIEKSGYPPCRS--NLSSSVHT 255
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 16/178 (8%)
Query: 100 EEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTM 159
+E+ S + + +L+VG +P MT +L +F E V V ++ D+ T SRG FV
Sbjct: 5 KEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVIC 64
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAG 219
S D+A +A+ + +P L +++ + + HK++ G
Sbjct: 65 PSRDEADKAVNACHNKKT-----------LPGASSPL----QVKYADGELERLEHKLFIG 109
Query: 220 NLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
L +S ++ +F++ G + I S+G F+ +ET + AAL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKY-GTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAING 166
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L++ ++P +L F G V+S +V D+ T S+ F FV+ S + A+ AI M
Sbjct: 350 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 409
Query: 173 DGSQVGGRIVRV 184
+G Q+GG+ ++V
Sbjct: 410 NGCQLGGKKLKV 421
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 18/196 (9%)
Query: 101 EQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG 160
E + D R ++ +P T + E F +AG V V ++ DR + RS+G ++
Sbjct: 192 EPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFY 251
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG-------GERLVMGPKIRNNNRDFVDSS 213
AI + G + G+ V V E K V+GP +
Sbjct: 252 DAMSVPMAIAL-SGQLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGP--------YGAVD 302
Query: 214 HKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK 273
K+Y GNL + ++ +L+++F + ++ + ++G +GFGFV F + +AA +
Sbjct: 303 RKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAKAA-Q 361
Query: 274 TMNG-VEVQGRELRLN 288
++NG +E+ GR ++++
Sbjct: 362 SLNGKLEIAGRTIKVS 377
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 94 DKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
D +++ + +S +YVG +P S L E G VV V +M + ++G
Sbjct: 93 DDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKG 152
Query: 154 FAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSS 213
FAFVT +V+ A +AI + ++ GR ++ + + +
Sbjct: 153 FAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQ-----------------------AK 189
Query: 214 HKIYAGNLGWRVSSQDLKDVFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAA 271
++++ GN+ +DLK V + PG+ + +++ + ++ +RGF F+ + Q E
Sbjct: 190 NRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYG 249
Query: 272 LKTM 275
+ M
Sbjct: 250 RQKM 253
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD +L+VG + T L F + G V+ + +DR T RGF FVT + A
Sbjct: 7 SDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAHN 66
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF---VDSSH----KIYAGN 220
A++ D + GR V V +P+ + + R N + H KI+ G
Sbjct: 67 ALQ--DTHAILGRKVEVR-KAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKKIFVGG 123
Query: 221 LGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL----KTMN 276
L +S ++ K F + V+ + + R RGFGF+TF++ V++ + +N
Sbjct: 124 LPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFHDLN 183
Query: 277 GVEVQ 281
G +V+
Sbjct: 184 GRQVE 188
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 83/174 (47%), Gaps = 20/174 (11%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+L+V L T+ L +F G + V++D+ T RS+G+ FV VD A A++
Sbjct: 76 RKLFVRGLSGETTTETLRTVFSSYGDLDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALK 135
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
++ GR+ G + SS K++ GN+ + VS++ L
Sbjct: 136 E-PSKKIDGRMTVTQLAAAGSTGGDV---------------SSRKVFVGNVPFEVSAESL 179
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ----DVEAALKTMNGVEV 280
F++ + + +++ SG++RGF F ++T + V ++KT++G +V
Sbjct: 180 LSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTEEGAKNSVAESMKTVDGHQV 233
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 59/104 (56%), Gaps = 3/104 (2%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L+VG L + T L++ F G VV +V+ DR++++S+G+ FVT S D+A++AI
Sbjct: 33 KLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITE 92
Query: 172 FDGSQVGGRIVRVNF--PEVPKG-GERLVMGPKIRNNNRDFVDS 212
+ + GR+V V++ P+ + G + GP N + DS
Sbjct: 93 MNEKALNGRVVFVDYAKPDTKRSMGMPIARGPPEDLNKQHTTDS 136
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+ K++ G L + + + L D F+ +V AKVI +R S +S+G+GFVTF + + E A+
Sbjct: 31 AFKLFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAI 90
Query: 273 KTMNGVEVQGRELRLNLA 290
MN + GR + ++ A
Sbjct: 91 TEMNEKALNGRVVFVDYA 108
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 99 EEEQKVSTSSDDR------RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSR 152
EEE ++S D + RL+V NLPYS T +L E F + G+V ++ D+ T RS+
Sbjct: 311 EEEGQLSNPEDKKGVSEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSK 370
Query: 153 GFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPK 191
G A++ + + A A+ D S GR++ V P +P+
Sbjct: 371 GIAYIHFSAPEFAARALEESDNSIFQGRLLHV-MPAIPR 408
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEA---GTVVSVEVMYDRVTDR--SRGFAFVTMGSVDDA 165
R L+V NL + T L E F E G ++SV+V + S GF FV S + A
Sbjct: 641 RSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMGFGFVEFDSTETA 700
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRV 225
G+ + G + + V +++ K+ + SS K+ N+ +
Sbjct: 701 TSVCNDLQGTVLDGHALILQLCHVKNDDDKV--QKKVEKDK-----SSTKLLVKNVAFEA 753
Query: 226 SSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGREL 285
+ +DL+ +F+ + S ++ + G RGF FV + T Q+ + AL ++ + GR L
Sbjct: 754 TEKDLRQLFSPFGQIKSLRLPMK--FGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHL 811
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 25/209 (11%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
RR+YVG LP + F + AG+ SV +Y + + FAFV M +
Sbjct: 15 RRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVY---INHEKKFAFVEMRT 71
Query: 162 VDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------ 209
V++A A+ + DG G VRV P V+GP + N +
Sbjct: 72 VEEASNAMAL-DGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGG 130
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+ +I+ G L + + ++++ L S ++ ++++G S+G+GF ++ +
Sbjct: 131 AEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTD 190
Query: 270 AALKTMNGVEVQGRELRLNLAAVKAPSSP 298
A +NG+++ + L + A V A S P
Sbjct: 191 IACAALNGLKMGDKTLTVRRATVSAHSKP 219
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 94 DKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
D +++ + +S +YVG +P S L E G VV V +M + ++G
Sbjct: 93 DDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKG 152
Query: 154 FAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSS 213
FAFVT +V+ A +AI + ++ GR ++ + + NR F+
Sbjct: 153 FAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQA---------------KNRLFI--- 194
Query: 214 HKIYAGNLGWRVSSQDLKDVFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAA 271
GN+ +DLK V + PG+ + +++ + ++ +RGF F+ + Q E
Sbjct: 195 -----GNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYG 249
Query: 272 LKTM 275
+ M
Sbjct: 250 RQKM 253
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYD-RVTDRSRGFAFVTMG 160
K STS RL++GN+P S L ++ + G V +VE++ D + +RGFAF+
Sbjct: 182 KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYH 241
Query: 161 SVDDAKEA-IRMFDGS-QVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH--KI 216
+ A+ +M S ++G V++ + PK N D SS +
Sbjct: 242 NNQCAEYGRQKMMSPSFKLGDNSPTVSWAD-----------PK----NSDSSASSQVKAV 286
Query: 217 YAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTM 275
Y NL V+ + LK +F E G ++ V+ SG+ + GFV F + ALK
Sbjct: 287 YVKNLPKNVTQEQLKKLF-EHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNT 345
Query: 276 NGVEVQGRELRLNLAAVKA 294
E+ G+ L +LA +A
Sbjct: 346 ERYELDGQNLECSLAKPQA 364
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 94 DKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
D +++ + +S +YVG +P S L E G VV V +M + ++G
Sbjct: 93 DDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKG 152
Query: 154 FAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSS 213
FAFVT +V+ A +AI + ++ GR ++ + + NR F+
Sbjct: 153 FAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQA---------------KNRLFI--- 194
Query: 214 HKIYAGNLGWRVSSQDLKDVFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAA 271
GN+ +DLK V + PG+ + +++ + ++ +RGF F+ + Q E
Sbjct: 195 -----GNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYG 249
Query: 272 LKTM 275
+ M
Sbjct: 250 RQKM 253
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYD-RVTDRSRGFAFVTMG 160
K STS RL++GN+P S L ++ + G V +VE++ D + +RGFAF+
Sbjct: 182 KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYH 241
Query: 161 SVDDAKEA-IRMFDGS-QVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH--KI 216
+ A+ +M S ++G V++ + PK N D SS +
Sbjct: 242 NNQCAEYGRQKMMSPSFKLGDNSPTVSWAD-----------PK----NSDSSASSQVKAV 286
Query: 217 YAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTM 275
Y NL V+ + LK +F E G ++ V+ SG+ + GFV F + ALK
Sbjct: 287 YVKNLPKNVTQEQLKKLF-EHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNT 345
Query: 276 NGVEVQGRELRLNLAAVKA 294
E+ G+ L +LA +A
Sbjct: 346 ERYELDGQNLECSLAKPQA 364
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 25/184 (13%)
Query: 94 DKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
D +++ + +S +YVG +P S L E G VV V +M + ++G
Sbjct: 93 DDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKG 152
Query: 154 FAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSS 213
FAFVT +V+ A +AI + ++ GR ++ + + NR F+
Sbjct: 153 FAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQA---------------KNRLFI--- 194
Query: 214 HKIYAGNLGWRVSSQDLKDVFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAA 271
GN+ +DLK V + PG+ + +++ + ++ +RGF F+ + Q E
Sbjct: 195 -----GNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYG 249
Query: 272 LKTM 275
+ M
Sbjct: 250 RQKM 253
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYD-RVTDRSRGFAFVTMG 160
K STS RL++GN+P S L ++ + G V +VE++ D + +RGFAF+
Sbjct: 182 KCSTSQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELVKDMKNISNNRGFAFIDYH 241
Query: 161 SVDDAKEA-IRMFDGS-QVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH--KI 216
+ A+ +M S ++G V++ + PK N D SS +
Sbjct: 242 NNQCAEYGRQKMMSPSFKLGDNSPTVSWAD-----------PK----NSDSSASSQVKAV 286
Query: 217 YAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTM 275
Y NL V+ + LK +F E G ++ V+ SG+ + GFV F + ALK
Sbjct: 287 YVKNLPKNVTQEQLKKLF-EHHGKITKVVLPPPKSGQEKNRIGFVHFAERSNAMKALKNT 345
Query: 276 NGVEVQGRELRLNLAAVKA 294
E+ G+ L +LA +A
Sbjct: 346 ERYELDGQNLECSLAKPQA 364
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 25/209 (11%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
RR+YVG LP + F + AG+ SV +Y + + FAFV M +
Sbjct: 58 RRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVY---INHEKKFAFVEMRT 114
Query: 162 VDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------ 209
V++A A+ + DG G VRV P V+GP + N +
Sbjct: 115 VEEASNAMAL-DGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGG 173
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+ +I+ G L + + ++++ L S ++ ++++G S+G+GF ++ +
Sbjct: 174 AEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTD 233
Query: 270 AALKTMNGVEVQGRELRLNLAAVKAPSSP 298
A +NG+++ + L + A V A S P
Sbjct: 234 IACAALNGLKMGDKTLTVRRATVSAHSKP 262
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 25/209 (11%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
RR+YVG LP + F + AG+ SV +Y + + FAFV M +
Sbjct: 178 RRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVY---INHEKKFAFVEMRT 234
Query: 162 VDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------ 209
V++A A+ + DG G VRV P V+GP + N +
Sbjct: 235 VEEASNAMAL-DGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGG 293
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+ +I+ G L + + ++++ L S ++ ++++G S+G+GF ++ +
Sbjct: 294 AEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTD 353
Query: 270 AALKTMNGVEVQGRELRLNLAAVKAPSSP 298
A +NG+++ + L + A V A S P
Sbjct: 354 IACAALNGLKMGDKTLTVRRATVSAHSKP 382
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 25/209 (11%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AGTVVSVEVMYDRVTDRSRGFAFVTMGS 161
RR+YVG LP + F + AG+ SV +Y + + FAFV M +
Sbjct: 163 RRVYVGGLPPFANEQSIASFFSQVMIAIGGNSAGSGDSVVNVY---INHEKKFAFVEMRT 219
Query: 162 VDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------ 209
V++A A+ + DG G VRV P V+GP + N +
Sbjct: 220 VEEASNAMAL-DGIVFEGVAVRVRRPTDYNPSLAAVLGPCQPSANLNLSAVGLSAGTIGG 278
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+ +I+ G L + + ++++ L S ++ ++++G S+G+GF ++ +
Sbjct: 279 AEGLDRIFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTD 338
Query: 270 AALKTMNGVEVQGRELRLNLAAVKAPSSP 298
A +NG+++ + L + A V A S P
Sbjct: 339 IACAALNGLKMGDKTLTVRRATVSAHSKP 367
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 212 SSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAA 271
SS K++ G L + V Q L+D F +V A+VI +R++GRSRGFGFV F + + +A
Sbjct: 34 SSSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSA 93
Query: 272 LKTMNG 277
L +M+G
Sbjct: 94 L-SMDG 98
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 15/178 (8%)
Query: 100 EEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTM 159
+E+ S + + +L+VG +P MT +L +F E V V ++ D+ T SRG FV
Sbjct: 5 KEESKSNNEESVKLFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVIC 64
Query: 160 GSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAG 219
S D+A +A+ + +P L +++ + + HK++ G
Sbjct: 65 PSRDEADKAVNACHNKKT-----------LPGASSPL----QVKYADGELERLEHKLFIG 109
Query: 220 NLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNG 277
L +S ++ +F++ + +++ G F+ +ET + AAL+ +NG
Sbjct: 110 MLPKNISEVEVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAING 167
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L++ ++P +L F G V+S +V D+ T S+ F FV+ S + A+ AI M
Sbjct: 351 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 410
Query: 173 DGSQVGGRIVRV 184
+G Q+GG+ ++V
Sbjct: 411 NGCQLGGKKLKV 422
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 48/80 (60%)
Query: 208 DFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
++ + ++++ G+LG V+ L F P A+V+ ++ +G+++G+GF++F D
Sbjct: 126 EWPEDDYRLFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPAD 185
Query: 268 VEAALKTMNGVEVQGRELRL 287
+ AALK MNG V R ++L
Sbjct: 186 LAAALKEMNGKYVGNRPIKL 205
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 7/181 (3%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS---VDD 164
SD +L++G + + +L E F G V++ VM ++ T + RGF FV +D
Sbjct: 3 SDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDR 62
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWR 224
E + DG V + + R N+ + KI+ G L
Sbjct: 63 VLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPT 122
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT----MNGVEV 280
++ + + F + V+Y++++GR RGFGF+TF+T + V+ L +NG +V
Sbjct: 123 LAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQV 182
Query: 281 Q 281
+
Sbjct: 183 E 183
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 7/181 (3%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGS---VDD 164
SD +L++G + + +L E F G V++ VM ++ T + RGF FV +D
Sbjct: 3 SDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDR 62
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWR 224
E + DG V + + R N+ + KI+ G L
Sbjct: 63 VLEDKHVIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPT 122
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT----MNGVEV 280
++ + + F + V+Y++++GR RGFGF+TF+T + V+ L +NG +V
Sbjct: 123 LAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQV 182
Query: 281 Q 281
+
Sbjct: 183 E 183
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
+L V NLP+ +++ + F AGTV V + T S+GFAFV DA+ AIR
Sbjct: 283 KLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIRK 342
Query: 172 FDGSQVGGRIVRVNFPEVPK 191
+GS+ G R++ V++ VPK
Sbjct: 343 LNGSKFGSRLIAVDWA-VPK 361
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L+V NLPYS T+SQL + F E G V ++ + + + RGF +V DA +AI +
Sbjct: 23 LFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDANQAIELK 82
Query: 173 DGSQVGGR--IVRVNFPEVPKGGER 195
+ S VG R +V+ P P+ R
Sbjct: 83 NSSLVGDRKIVVKHAIPRPPRENRR 107
>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:44331530-44321717 | 20130731
Length = 401
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 96 PQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFA 155
P + +++++S S R +YVGNLP + ++ ++F++ G + +++ +V R G+A
Sbjct: 94 PLKSKKRRMSRHSS-RTVYVGNLPGDIREREVEDLFMKYGHITHIDL---KVPPRPPGYA 149
Query: 156 FVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGG-------ERLVMGPKIRNNNRD 208
FV V DA++AIR DG G +RV E GG +R R
Sbjct: 150 FVEFEDVQDAEDAIRGRDGYDFDGHRLRV---EAAHGGRGNSSSRDRYSSHSNGRGGRGV 206
Query: 209 FVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQD 267
S +++ L S QDLKD + + ++V ++ RG G V + D
Sbjct: 207 SRRSEYRVIVNGLPSSASWQDLKDHMRKAGDVCFSQVFHD-----GRGTTGIVDYTNYDD 261
Query: 268 VEAALKTMNGVEVQ 281
++ A+K ++ E +
Sbjct: 262 MKYAIKKLDDSEFR 275
>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
protein | HC | chr5:19719748-19722666 | 20130731
Length = 170
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYVG L + S L F+ G + V+ D+ T + R F FVT +DA A+
Sbjct: 12 LYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNM 71
Query: 173 DGSQVGGRIVRVNF--PEVPKGGER 195
DG+++ GR++ VN+ PE KGGE+
Sbjct: 72 DGAELYGRVLTVNYALPEKIKGGEQ 96
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 22/182 (12%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
++ GN Y S+L +F G V DRV D GFAF+ M DA+ AIR
Sbjct: 4 IFCGNFEYDCRESELERLFRRYGKV-------DRV-DMKAGFAFIYMEDERDAEAAIRAL 55
Query: 173 DGSQVG--GRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLG-WRVSSQD 229
D + G GR +RV + + +G R PK + N S ++ N ++ ++D
Sbjct: 56 DRIEFGRKGRRLRVEWTKQERGVRRPAERPKRSSAN---ARPSKTLFVINFDTYQTRTRD 112
Query: 230 LKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNL 289
L+ F +VS ++ + F FV +E+ D AL+ N ++ R + +
Sbjct: 113 LERHFEPYGKIVSVRI--------RKNFAFVQYESEDDACKALEATNNSKLMDRVISVEF 164
Query: 290 AA 291
AA
Sbjct: 165 AA 166
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
DD LY+G LP ++ L ++F + G +V +V+ DR+T S+G+ FV + A A
Sbjct: 449 DDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNA 508
Query: 169 IRMFDGSQVGGRIVRV 184
I +G ++ GR + V
Sbjct: 509 IVAMNGYRLEGRTIAV 524
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+Y+G +P+ + L G V V VM + ++G+AFVT + + A +A++
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKEL 159
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ S+ GR ++ + +V H+++ G++ + +D+K
Sbjct: 160 NNSEFKGRKIKCSPSQV-----------------------KHRLFIGSVPKEWTVEDMKK 196
Query: 233 VFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAALKTM 275
V A+ PG++S +++ + + S R+RGF F+ + E + + M
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKM 241
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYD-RVTDRSRGFAFVTMG 160
K S S RL++G++P T + ++ + G V+SVE++ D + + R+RGFAF+
Sbjct: 170 KCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYH 229
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGN 220
+ A + ++ +++ + +V RN+ +Y N
Sbjct: 230 N-----HACAEYSRQKMSNSNFKLD------NNDAIVSWADPRNSESSSSSQVKAVYVKN 278
Query: 221 LGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTMNGVE 279
L ++ LK++F E G ++ + +G+ + +GFV F ALK E
Sbjct: 279 LPENITQNRLKELF-EHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYE 337
Query: 280 VQGRELRLNLAAVKA 294
+ G+ L +LA +A
Sbjct: 338 INGQTLECSLAKPQA 352
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+Y+G +P+ + L G V V VM + ++G+AFVT + + A +A++
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKEL 159
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ S+ GR ++ + +V H+++ G++ + +D+K
Sbjct: 160 NNSEFKGRKIKCSPSQV-----------------------KHRLFIGSVPKEWTVEDMKK 196
Query: 233 VFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAALKTM 275
V A+ PG++S +++ + + S R+RGF F+ + E + + M
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKM 241
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYD-RVTDRSRGFAFVTMG 160
K S S RL++G++P T + ++ + G V+SVE++ D + + R+RGFAF+
Sbjct: 170 KCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYH 229
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGN 220
+ A + ++ +++ + +V RN+ +Y N
Sbjct: 230 N-----HACAEYSRQKMSNSNFKLD------NNDAIVSWADPRNSESSSSSQVKAVYVKN 278
Query: 221 LGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTMNGVE 279
L ++ LK++F E G ++ + +G+ + +GFV F ALK E
Sbjct: 279 LPENITQNRLKELF-EHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYE 337
Query: 280 VQGRELRLNLAAVKA 294
+ G+ L +LA +A
Sbjct: 338 INGQTLECSLAKPQA 352
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+Y+G +P+ + L G V V VM + ++G+AFVT + + A +A++
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKEL 159
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ S+ GR ++ + +V H+++ G++ + +D+K
Sbjct: 160 NNSEFKGRKIKCSPSQV-----------------------KHRLFIGSVPKEWTVEDMKK 196
Query: 233 VFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAALKTM 275
V A+ PG++S +++ + + S R+RGF F+ + E + + M
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKM 241
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYD-RVTDRSRGFAFVTMG 160
K S S RL++G++P T + ++ + G V+SVE++ D + + R+RGFAF+
Sbjct: 170 KCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYH 229
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGN 220
+ A + ++ +++ + +V RN+ +Y N
Sbjct: 230 N-----HACAEYSRQKMSNSNFKLD------NNDAIVSWADPRNSESSSSSQVKAVYVKN 278
Query: 221 LGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTMNGVE 279
L ++ LK++F E G ++ + +G+ + +GFV F ALK E
Sbjct: 279 LPENITQNRLKELF-EHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYE 337
Query: 280 VQGRELRLNLAAVKA 294
+ G+ L +LA +A
Sbjct: 338 INGQTLECSLAKPQA 352
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 78/165 (47%), Gaps = 28/165 (16%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
+Y+G +P+ + L G V V VM + ++G+AFVT + + A +A++
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGK---EAKGYAFVTFKTKELASKALKEL 159
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKD 232
+ S+ GR ++ + +V H+++ G++ + +D+K
Sbjct: 160 NNSEFKGRKIKCSPSQV-----------------------KHRLFIGSVPKEWTVEDMKK 196
Query: 233 VFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAALKTM 275
V A+ PG++S +++ + + S R+RGF F+ + E + + M
Sbjct: 197 VVAKVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKM 241
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 87/195 (44%), Gaps = 15/195 (7%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYD-RVTDRSRGFAFVTMG 160
K S S RL++G++P T + ++ + G V+SVE++ D + + R+RGFAF+
Sbjct: 170 KCSPSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISVELLKDPQSSSRNRGFAFIEYH 229
Query: 161 SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGN 220
+ A + ++ +++ + +V RN+ +Y N
Sbjct: 230 N-----HACAEYSRQKMSNSNFKLD------NNDAIVSWADPRNSESSSSSQVKAVYVKN 278
Query: 221 LGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTMNGVE 279
L ++ LK++F E G ++ + +G+ + +GFV F ALK E
Sbjct: 279 LPENITQNRLKELF-EHHGKITKVALPPAKAGQEKSRYGFVHFADRSSAMKALKNTEKYE 337
Query: 280 VQGRELRLNLAAVKA 294
+ G+ L +LA +A
Sbjct: 338 INGQTLECSLAKPQA 352
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 99 EEEQKVSTSSDDR------RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSR 152
EEE ++S D + RL+V NLPYS T +L E F + G+V V ++ D+ T RS+
Sbjct: 881 EEEGQLSNPEDKKGVSEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSK 940
Query: 153 GFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRV 184
G AF+ + A A+ D S GR++ V
Sbjct: 941 GRAFIHFSVPEFAARALEESDNSIFQGRLLHV 972
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RL+V NLPYS T +L E F + G+V V ++ VT RS+G AF+ + A A+
Sbjct: 193 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 252
Query: 172 FDGSQVGGRIVRV 184
+ S GR++RV
Sbjct: 253 SNNSIFQGRLLRV 265
>Medtr5g070100.1 | RNA recognition motif (RRM) containing protein |
HC | chr5:29707444-29702897 | 20130731
Length = 393
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
++VG +P+ T + +F + G VV + ++ D+ T +S+GFAF+ A+
Sbjct: 38 VFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLAVDNL 97
Query: 173 DGSQVGGRIVRVNF 186
+G+QV GRI+RV+
Sbjct: 98 NGAQVSGRIIRVDH 111
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RL+V NLPYS T +L E F + G+V V ++ VT RS+G AF+ + A A+
Sbjct: 179 RLFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEE 238
Query: 172 FDGSQVGGRIVRV 184
+ S GR++RV
Sbjct: 239 SNNSIFQGRLLRV 251
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
+ R+L V +P+ + + L E + G + VM +R T RSRGF +VT SVDDAKE
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 169 IRMFDGSQV-GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
+ G V G R++ V V PK R +I+ + V+
Sbjct: 62 L---SGEHVLGDRMLEVK-----------VATPK--EEMRAPAKKVTRIFVARIPPSVTE 105
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+ + F + + + ++ S RG GF+TF A+ VE
Sbjct: 106 ETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVE 147
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
+ R+L V +P+ + + L E + G + VM +R T RSRGF +VT SVDDAKE
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 169 IRMFDGSQV-GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
+ G V G R++ V V PK R +I+ + V+
Sbjct: 62 L---SGEHVLGDRMLEVK-----------VATPK--EEMRAPAKKVTRIFVARIPPSVTE 105
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+ + F + + + ++ S RG GF+TF A+ VE
Sbjct: 106 ETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVE 147
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
+ R+L V +P+ + + L E + G + VM +R T RSRGF +VT SVDDAKE
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 169 IRMFDGSQV-GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
+ G V G R++ V V PK R +I+ + V+
Sbjct: 62 L---SGEHVLGDRMLEVK-----------VATPK--EEMRAPAKKVTRIFVARIPPSVTE 105
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+ + F + + + ++ S RG GF+TF A+ VE
Sbjct: 106 ETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVE 147
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 109 DDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEA 168
+ R+L V +P+ + + L E + G + VM +R T RSRGF +VT SVDDAKE
Sbjct: 2 EQRKLVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEV 61
Query: 169 IRMFDGSQV-GGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSS 227
+ G V G R++ V V PK R +I+ + V+
Sbjct: 62 L---SGEHVLGDRMLEVK-----------VATPK--EEMRAPAKKVTRIFVARIPPSVTE 105
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+ + F + + + ++ S RG GF+TF A+ VE
Sbjct: 106 ETFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVE 147
>Medtr4g094235.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499515-37504601 | 20130731
Length = 280
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD L V N+ + T+ L +F + G VV + + DR T SRGFAFV D+A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASK 72
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMG 199
A+ DG V GR + V F + ER+ G
Sbjct: 73 AVDRLDGRMVDGREITVQFAKYGPNAERIQKG 104
>Medtr4g094235.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499504-37504601 | 20130731
Length = 280
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD L V N+ + T+ L +F + G VV + + DR T SRGFAFV D+A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASK 72
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMG 199
A+ DG V GR + V F + ER+ G
Sbjct: 73 AVDRLDGRMVDGREITVQFAKYGPNAERIQKG 104
>Medtr4g094235.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504526 | 20130731
Length = 281
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD L V N+ + T+ L +F + G VV + + DR T SRGFAFV D+A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASK 72
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMG 199
A+ DG V GR + V F + ER+ G
Sbjct: 73 AVDRLDGRMVDGREITVQFAKYGPNAERIQKG 104
>Medtr4g094235.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:37499531-37504601 | 20130731
Length = 281
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 47/92 (51%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
SD L V N+ + T+ L +F + G VV + + DR T SRGFAFV D+A +
Sbjct: 13 SDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASK 72
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMG 199
A+ DG V GR + V F + ER+ G
Sbjct: 73 AVDRLDGRMVDGREITVQFAKYGPNAERIQKG 104
>Medtr5g070450.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L V N+ + T+ L +F + G VV + + DR T SRGFAFV D+A +A+
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMG 199
DG V GR + V F + ER+ G
Sbjct: 78 DGRMVDGREITVQFAKYGPNAERIHKG 104
>Medtr5g070450.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L V N+ + T+ L +F + G VV + + DR T SRGFAFV D+A +A+
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMG 199
DG V GR + V F + ER+ G
Sbjct: 78 DGRMVDGREITVQFAKYGPNAERIHKG 104
>Medtr5g070450.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L V N+ + T+ L +F + G VV + + DR T SRGFAFV D+A +A+
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMG 199
DG V GR + V F + ER+ G
Sbjct: 78 DGRMVDGREITVQFAKYGPNAERIHKG 104
>Medtr5g070450.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:29846071-29843364 | 20130731
Length = 267
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L V N+ + T+ L +F + G VV + + DR T SRGFAFV D+A +A+
Sbjct: 18 LLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGESRGFAFVRYKYADEASKAVDRL 77
Query: 173 DGSQVGGRIVRVNFPEVPKGGERLVMG 199
DG V GR + V F + ER+ G
Sbjct: 78 DGRMVDGREITVQFAKYGPNAERIHKG 104
>Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr8:20148291-20144393 | 20130731
Length = 303
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 19/179 (10%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGNLP + ++ ++F++ G + +++ +V R G+AFV V DA++AIR
Sbjct: 7 RTVYVGNLPGDIREREVEDLFMKYGHITHIDL---KVPPRPPGYAFVEFEDVQDAEDAIR 63
Query: 171 MFDGSQVGGRIVRVNFPEVPKGG-------ERLVMGPKIRNNNRDFVDSSHKIYAGNLGW 223
DG G +RV E GG +R R S +++ L
Sbjct: 64 GRDGYDFDGHRLRV---EAAHGGRGNSSSRDRYSSHSNGRGGRGVSRRSEYRVIVNGLPS 120
Query: 224 RVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTMNGVEVQ 281
S QDLKD + + ++V ++ RG G V + D++ A+K ++ E +
Sbjct: 121 SASWQDLKDHMRKAGDVCFSQVFHD-----GRGTTGIVDYTNYDDMKYAIKKLDDSEFR 174
>Medtr3g116130.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54301450-54296178 | 20130731
Length = 281
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 206 NRDFVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFET 264
N F D+++ K++ G L W S+ ++ F + ++ A VI ++++GRS+G+GFVTF
Sbjct: 20 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRD 79
Query: 265 AQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVT 301
+ A + V + GR NLA+ P P ++
Sbjct: 80 PEAARRACADPSPV-IDGRRANCNLASHGRPRGPPIS 115
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 34/197 (17%)
Query: 95 KPQQEEEQKVS--TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSR 152
+PQ E + S +S+ LYV NL +T S L ++FV+ G + SV + +R
Sbjct: 9 RPQHEGSGRYSEDSSTPSNNLYVANLSPDVTDSDLMDLFVQYGALDSV------TSYSAR 62
Query: 153 GFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDS 212
+AFV +DDAK A G G +R+ F K +
Sbjct: 63 NYAFVFFKRIDDAKAAKNALQGFNFRGNSLRIEFARPAK--------------------T 102
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+++ G + V+ +DL+ F + + K +R++ V F D A+
Sbjct: 103 CKQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNT------ACVEFFNLDDAIQAM 156
Query: 273 KTMNGVEVQGRELRLNL 289
K MNG + G +R++
Sbjct: 157 KIMNGKHIGGENIRVDF 173
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 34/197 (17%)
Query: 95 KPQQEEEQKVS--TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSR 152
+PQ E + S +S+ LYV NL +T S L ++FV+ G + SV + +R
Sbjct: 9 RPQHEGSGRYSEDSSTPSNNLYVANLSPDVTDSDLMDLFVQYGALDSV------TSYSAR 62
Query: 153 GFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDS 212
+AFV +DDAK A G G +R+ F K +
Sbjct: 63 NYAFVFFKRIDDAKAAKNALQGFNFRGNSLRIEFARPAK--------------------T 102
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+++ G + V+ +DL+ F + + K +R++ V F D A+
Sbjct: 103 CKQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNT------ACVEFFNLDDAIQAM 156
Query: 273 KTMNGVEVQGRELRLNL 289
K MNG + G +R++
Sbjct: 157 KIMNGKHIGGENIRVDF 173
>Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:46405226-46398545 | 20130731
Length = 292
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGNLP + ++ ++F + G +V +E+ ++ R G+AFV DA++AIR
Sbjct: 7 RTIYVGNLPGDIRLREVEDLFYKFGPIVDIEL---KIPPRPPGYAFVEFEDARDAEDAIR 63
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFV--DSSHKIYAGNLGWRVSSQ 228
DG + G +RV +G V ++ V S +++ L S Q
Sbjct: 64 YRDGYKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPPSASWQ 123
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGF-GFVTFETAQDVEAALKTMNGVEVQ 281
DLKD + ++V RD G G G V + +D++ A++ ++ E +
Sbjct: 124 DLKDHMRRAGDVCFSQVF--RDRG---GMTGIVEYTNYEDMKYAIRKLDDSEFR 172
>Medtr3g116130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:54300708-54296502 | 20130731
Length = 372
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 2/97 (2%)
Query: 206 NRDFVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFET 264
N F D+++ K++ G L W S+ ++ F + ++ A VI ++++GRS+G+GFVTF
Sbjct: 20 NSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRD 79
Query: 265 AQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVT 301
+ A + V + GR NLA+ P P ++
Sbjct: 80 PEAARRACADPSPV-IDGRRANCNLASHGRPRGPPIS 115
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGV------ 278
+S L+ F+ ++ AK+I +R++GR RGFGFVTF T ++ AAL+TM+
Sbjct: 41 ISYNTLRKHFSLYGKVLDAKIIRDRETGRPRGFGFVTFATTEEASAALQTMSLAIKSMKN 100
Query: 279 -EVQGRELRLNLAAVKA 294
++ GR++R+N A K+
Sbjct: 101 QDLYGRKVRVNYATEKS 117
>Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC |
chr7:46405206-46401029 | 20130731
Length = 252
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 11/174 (6%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGNLP + ++ ++F + G +V +E+ ++ R G+AFV DA++AIR
Sbjct: 7 RTIYVGNLPGDIRLREVEDLFYKFGPIVDIEL---KIPPRPPGYAFVEFEDARDAEDAIR 63
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFV--DSSHKIYAGNLGWRVSSQ 228
DG + G +RV +G V ++ V S +++ L S Q
Sbjct: 64 YRDGYKFDGFRLRVELAHGGRGYSSSVDRYSSYSSGSRGVSKHSEYRVLVTGLPPSASWQ 123
Query: 229 DLKDVFAEQPGLVSAKVIYERDSGRSRGF-GFVTFETAQDVEAALKTMNGVEVQ 281
DLKD + ++V RD G G G V + +D++ A++ ++ E +
Sbjct: 124 DLKDHMRRAGDVCFSQVF--RDRG---GMTGIVEYTNYEDMKYAIRKLDDSEFR 172
>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + VS+ D+K++F+E L V Y+R SGRS+G V F QD
Sbjct: 90 IETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDR-SGRSKGTAEVVFSRRQDAV 148
Query: 270 AALKTMNGVEVQGRELRLNL 289
AA+K N V++ G+ +++ +
Sbjct: 149 AAVKRYNNVQLDGKPMKIEI 168
>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + VS+ D+K++F+E L V Y+R SGRS+G V F QD
Sbjct: 90 IETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDR-SGRSKGTAEVVFSRRQDAV 148
Query: 270 AALKTMNGVEVQGRELRLNL 289
AA+K N V++ G+ +++ +
Sbjct: 149 AAVKRYNNVQLDGKPMKIEI 168
>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
chr4:23458840-23463583 | 20130731
Length = 263
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 210 VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVE 269
+++ K+Y NL + VS+ D+K++F+E L V Y+R SGRS+G V F QD
Sbjct: 90 IETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDR-SGRSKGTAEVVFSRRQDAV 148
Query: 270 AALKTMNGVEVQGRELRLNL 289
AA+K N V++ G+ +++ +
Sbjct: 149 AAVKRYNNVQLDGKPMKIEI 168
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
RLYV L + T L F G +V V ++ D+V +R RGFAF+ + +++K+AI
Sbjct: 96 RLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIEG 155
Query: 172 FDGSQVGGRIVRVNFPEVPKGGERLVMGPK 201
G + GR++ F EV K L G K
Sbjct: 156 MHGKFLDGRVI---FVEVAKPRSELRQGSK 182
>Medtr8g024520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 282
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 7/105 (6%)
Query: 204 NNNRD-FVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVT 261
NNN+D + D++ K++ G L W + ++ F + ++ A VI ++ +GRS+G+GFVT
Sbjct: 13 NNNQDQYNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVT 72
Query: 262 FETAQDVEAALKTMNGVE--VQGRELRLNLAAVKAPSSPSVTEEN 304
F+ D EAA++ + GR N+A++ A + S+T +
Sbjct: 73 FK---DPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLTLHH 114
>Medtr8g024520.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9035953-9039164 | 20130731
Length = 280
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 7/105 (6%)
Query: 204 NNNRD-FVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVT 261
NNN+D + D++ K++ G L W + ++ F + ++ A VI ++ +GRS+G+GFVT
Sbjct: 13 NNNQDQYNDTTFTKLFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVT 72
Query: 262 FETAQDVEAALKTMNGVE--VQGRELRLNLAAVKAPSSPSVTEEN 304
F+ D EAA++ + GR N+A++ A + S+T +
Sbjct: 73 FK---DPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLTLHH 114
>Medtr3g092490.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
KI+ G L W LK F + ++ A VI +R +G+S+G+GFVTF+ A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 275 MNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSS 308
N + + GR NLA K PS+T + + +S
Sbjct: 87 PNPM-IDGRRANCNLAYQKP--DPSLTGKQKFNS 117
>Medtr3g092490.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253131 | 20130731
Length = 178
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
KI+ G L W LK F + ++ A VI +R +G+S+G+GFVTF+ A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 275 MNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSS 308
N + + GR NLA K PS+T + + +S
Sbjct: 87 PNPM-IDGRRANCNLAYQKP--DPSLTGKQKFNS 117
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R+L++ L + T+ L +F G + V+ D+ T +S+G+ FVT VD A A+R
Sbjct: 73 RKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALR 132
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL 230
++ GR+ G N N V + KIY N+ + L
Sbjct: 133 E-PSKRIDGRVTVTQLAAAGNSGS---------NTNAADV-AQRKIYVSNVPPDLPGDKL 181
Query: 231 KDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLA 290
F+ + + +++ +GRS+GF ++T + AA+ V+GR+L LA
Sbjct: 182 LAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVSEPV-KNVEGRQLNCKLA 240
>Medtr3g092490.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251226-42253109 | 20130731
Length = 251
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
KI+ G L W LK F + ++ A VI +R +G+S+G+GFVTF+ A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 275 MNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSS 308
N + + GR NLA K PS+T + + +S
Sbjct: 87 PNPM-IDGRRANCNLAYQKP--DPSLTGKQKFNS 117
>Medtr3g092490.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:42251169-42253164 | 20130731
Length = 250
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
KI+ G L W LK F + ++ A VI +R +G+S+G+GFVTF+ A +
Sbjct: 27 KIFVGGLAWETKRDTLKRYFDQFGDILEAVVITDRTTGKSKGYGFVTFKDPNSAILACQN 86
Query: 275 MNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSS 308
N + + GR NLA K PS+T + + +S
Sbjct: 87 PNPM-IDGRRANCNLAYQKP--DPSLTGKQKFNS 117
>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr2:28910323-28904195 | 20130731
Length = 415
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L+V L ++ L EIF G VVSVE++ DR + +G+ +V + +A++A+
Sbjct: 102 LHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYM 161
Query: 173 DGSQVGGRIVRVNF 186
DG+Q+ G +V+ F
Sbjct: 162 DGAQIDGNVVKARF 175
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 40/192 (20%)
Query: 88 PETETSDKPQQEEEQKVSTSSDDRR---------------LYVGNLPYSMTSSQLTEIFV 132
PE E SD +E+E K + ++ R +++G LP + + E+
Sbjct: 66 PEGEKSDHGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCE 125
Query: 133 EAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG 192
G +V ++++ DR T S+G+AFV + + A++AI + G+ +R E
Sbjct: 126 PMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSE---- 181
Query: 193 GERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL-KDVFAEQPGLVSAKVIYE-RD 250
+ H+++ GN+ + + K V PG+ S +I + ++
Sbjct: 182 -------------------TKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQN 222
Query: 251 SGRSRGFGFVTF 262
R+RGF FV +
Sbjct: 223 QSRNRGFAFVLY 234
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 40/192 (20%)
Query: 88 PETETSDKPQQEEEQKVSTSSDDRR---------------LYVGNLPYSMTSSQLTEIFV 132
PE E SD +E+E K + ++ R +++G LP + + E+
Sbjct: 66 PEGEKSDHGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCE 125
Query: 133 EAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG 192
G +V ++++ DR T S+G+AFV + + A++AI + G+ +R E
Sbjct: 126 PMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSE---- 181
Query: 193 GERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL-KDVFAEQPGLVSAKVIYE-RD 250
+ H+++ GN+ + + K V PG+ S +I + ++
Sbjct: 182 -------------------TKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQN 222
Query: 251 SGRSRGFGFVTF 262
R+RGF FV +
Sbjct: 223 QSRNRGFAFVLY 234
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 83/192 (43%), Gaps = 40/192 (20%)
Query: 88 PETETSDKPQQEEEQKVSTSSDDRR---------------LYVGNLPYSMTSSQLTEIFV 132
PE E SD +E+E K + ++ R +++G LP + + E+
Sbjct: 66 PEGEKSDHGAEEDELKPALIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCE 125
Query: 133 EAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKG 192
G +V ++++ DR T S+G+AFV + + A++AI + G+ +R E
Sbjct: 126 PMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSE---- 181
Query: 193 GERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDL-KDVFAEQPGLVSAKVIYE-RD 250
+ H+++ GN+ + + K V PG+ S +I + ++
Sbjct: 182 -------------------TKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLIKDPQN 222
Query: 251 SGRSRGFGFVTF 262
R+RGF FV +
Sbjct: 223 QSRNRGFAFVLY 234
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 25/184 (13%)
Query: 94 DKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRG 153
D +++ + +S +YVG +P + L E G VV V + + +RG
Sbjct: 333 DDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRG 392
Query: 154 FAFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSS 213
FAFVT S++ A +AI+ + ++ ++ + K + +R F+
Sbjct: 393 FAFVTYRSIELASKAIKELNNTEFKAGKIKCS---------------KSQAKSRLFI--- 434
Query: 214 HKIYAGNLGWRVSSQDLKDVFAE-QPGLVSAKVIYE-RDSGRSRGFGFVTFETAQDVEAA 271
GN+ +DLK V ++ PG+ + ++I + ++ +RG+ F+ + Q E +
Sbjct: 435 -----GNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYS 489
Query: 272 LKTM 275
+ M
Sbjct: 490 RQKM 493
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 88/199 (44%), Gaps = 23/199 (11%)
Query: 103 KVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGT-VVSVEVMYD-RVTDRSRGFAFVTMG 160
K S S RL++GN+P S L ++ + G V +VE++ D + +RG+AF+
Sbjct: 422 KCSKSQAKSRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELIKDMKNISNNRGYAFIDYH 481
Query: 161 SVDDAKEAIRMFDGS--QVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH--KI 216
+ A+ + + ++G VN+ E PK N D SS ++
Sbjct: 482 NNQCAEYSRQKMTSPSFKLGDNFPTVNWAE-----------PK----NADSSASSQVKEV 526
Query: 217 YAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRG-FGFVTFETAQDVEAALKTM 275
Y NL V+ + LK +F E G ++ V+ G+ + GFV F + ALK
Sbjct: 527 YVKNLPKNVTKEQLKKLF-EHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALKNT 585
Query: 276 NGVEVQGRELRLNLAAVKA 294
+ G+ L +LA +A
Sbjct: 586 EKYVLDGQILECSLAKQQA 604
>Medtr2g090655.1 | nuclear cap-binding protein subunit 2 | HC |
chr2:38808070-38813158 | 20130731
Length = 259
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
Query: 97 QQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAF 156
Q+E E + TS+ +YVGN+ + T Q+ E+F AG + + + D+ T GF F
Sbjct: 23 QEEFEHALKTSTT---VYVGNMSFYTTEEQIYELFTRAGEIKKIIMGLDKNTKTPCGFCF 79
Query: 157 VTMGSVDDAKEAIRMFDGSQVGGRIVRVNF 186
V S +D ++A + G+ + R +RV+F
Sbjct: 80 VLYYSREDTEDACKYISGTILDDRPIRVDF 109
>Medtr1g088180.1 | ASF/SF2-like pre-mRNA splicing factor SRP32,
putative | LC | chr1:39411452-39402479 | 20130731
Length = 448
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGNLP + ++ +F++ G + +++ +V R +AFV +A +AI
Sbjct: 7 RTVYVGNLPGDIREREVKHLFMKYGHITRIDL---KVPPRPPCYAFVVFKDALNADDAIC 63
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRD----FVDSSHKIYAGNLGWRVS 226
DG G +RV V I +N + S +++ L S
Sbjct: 64 ECDGYDFDGCRLRVEAAHVGYCNSSSRDRYSIHSNGQGGRGVSSHSEYRVLVNRLPSSAS 123
Query: 227 SQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQ 281
QDLKD + + ++V+++ GR G V + D++ A+K ++G E Q
Sbjct: 124 CQDLKDHMRKAGAVCFSQVVHD---GRV-TTGIVDYTNCDDMKYAIKNLDGSEFQ 174
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 83/198 (41%), Gaps = 19/198 (9%)
Query: 111 RRLYVGNLPYSMTSSQLTEIF------VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
RR+YVG LP + + F + T + + + + + FAFV M SV++
Sbjct: 240 RRVYVGGLPPTANEQSVAIFFSQVMANIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEE 299
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------VDS 212
A A+ + DG G V+V P +GP N N + ++
Sbjct: 300 ASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEG 358
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+I+ G L + + ++++ L ++ +R++G S+G+ F + + A
Sbjct: 359 PDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADLAVTDIAC 418
Query: 273 KTMNGVEVQGRELRLNLA 290
+NG+++ + L + A
Sbjct: 419 AALNGIKMGDKTLTVRRA 436
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W L++ F + ++ A +I ++ +GRS+G+GFVTF+ A + A +
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 275 MNGVEVQGRELRLNLAAVKA 294
V + GR N+A++ A
Sbjct: 79 PT-VIINGRRANCNIASLGA 97
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W L++ F + ++ A +I ++ +GRS+G+GFVTF+ A + A +
Sbjct: 19 KVFVGGLAWETPKDTLREHFEKYGDILEAVIISDKVTGRSKGYGFVTFKDADSAKKACEE 78
Query: 275 MNGVEVQGRELRLNLAAVKA 294
V + GR N+A++ A
Sbjct: 79 PT-VIINGRRANCNIASLGA 97
>Medtr5g064120.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:26612934-26618708 | 20130731
Length = 283
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ G L W + +++ F + ++ A +I ++++G+S+G+GFVTF + A
Sbjct: 17 KVFVGGLAWETPTDEMRTYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACAD 76
Query: 275 MNGVEVQGRELRLNLAAV 292
N V + GR N+A++
Sbjct: 77 PNPV-IDGRRANCNIASL 93
>Medtr4g113150.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512527-46508373 | 20130731
Length = 428
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
T DD +YVG LPY T + +F G ++ V+++ D+ T + + FVT + A
Sbjct: 2 TLDDDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRT-IGKCYCFVTFTNPRSA 60
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGG 193
+AI +G + GR+V+VN + GG
Sbjct: 61 IDAINDMNGRTINGRVVKVNGVKSRGGG 88
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 19/198 (9%)
Query: 111 RRLYVGNLPYSMTSSQLTEIF------VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
RR+YVG L + + F + T + + + + + FAFV M SV++
Sbjct: 288 RRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEE 347
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------VDS 212
A A+ + DG G V+V P +GP N N + +D
Sbjct: 348 ASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLDG 406
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+I+ G + + + ++++ L ++ +R++G S+G+ F ++ + A
Sbjct: 407 PDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 466
Query: 273 KTMNGVEVQGRELRLNLA 290
+NG+++ + L + A
Sbjct: 467 AALNGIKMGDKTLTVRRA 484
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 19/198 (9%)
Query: 111 RRLYVGNLPYSMTSSQLTEIF------VEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDD 164
RR+YVG L + + F + T + + + + + FAFV M SV++
Sbjct: 290 RRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEE 349
Query: 165 AKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF------------VDS 212
A A+ + DG G V+V P +GP N N + +D
Sbjct: 350 ASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGSAGGLDG 408
Query: 213 SHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAAL 272
+I+ G + + + ++++ L ++ +R++G S+G+ F ++ + A
Sbjct: 409 PDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIAC 468
Query: 273 KTMNGVEVQGRELRLNLA 290
+NG+++ + L + A
Sbjct: 469 AALNGIKMGDKTLTVRRA 486
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 21/194 (10%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
++YV +P + + + + +F GT+V V ++ D+ T +G V + D+A AI+
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 172 FDGSQV---GGRIVRVNFPEVPKGGERLVMGPKIRN-NNRDFVDSSHKIYAGNLGWRVSS 227
V V F + + ER + +N RD + K+Y G + S
Sbjct: 135 LSNQYTFPGESSPVVVRFAD--RKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASK 192
Query: 228 QDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK------TMNGVEVQ 281
Q+++++F+ G + V+ R+RG+GFV F + AA+K TM G +
Sbjct: 193 QEIEEIFSPY-GHIEDVVVL-----RNRGYGFVKFYNREMALAAIKGLDRTFTMRGCD-- 244
Query: 282 GRELRLNLAAVKAP 295
+ L + A K P
Sbjct: 245 -QPLIVRFAEPKKP 257
>Medtr4g113150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:46512521-46508373 | 20130731
Length = 561
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 106 TSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDA 165
T DD +YVG LPY T + +F G ++ V+++ D+ T + + FVT + A
Sbjct: 2 TLDDDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRT-IGKCYCFVTFTNPRSA 60
Query: 166 KEAIRMFDGSQVGGRIVRVNFPEVPKGG 193
+AI +G + GR+V+VN + GG
Sbjct: 61 IDAINDMNGRTINGRVVKVNGVKSRGGG 88
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 211 DSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEA 270
SS K++ L + + L+D F + ++ KVI +G S+G+GFV F +
Sbjct: 30 HSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETAAAT 89
Query: 271 ALKTMNGVEVQGRELRLNLA 290
A K ++G V GR +R+ A
Sbjct: 90 ARKELHGQIVDGRRIRVGYA 109
>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:24877263-24880115 | 20130731
Length = 340
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV L +T +L + F G VV V ++ D T SRGF FVTM ++++A ++
Sbjct: 47 LYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADRCVKYL 106
Query: 173 DGSQVGGRIVRV 184
+ S + GR++ V
Sbjct: 107 NRSVLEGRVITV 118
>Medtr1g092860.1 | RNA-binding (RRM/RBD/RNP motif) family protein,
putative | HC | chr1:41816599-41813158 | 20130731
Length = 284
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%)
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
K++ L + S + L+ F LV KVI ++ S RS+G+ F+ + T + AALK
Sbjct: 193 KLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIIDKISKRSKGYAFIEYTTEEAASAALKE 252
Query: 275 MNGVEVQGRELRLNLAAVKAP 295
MNG + G + +++A P
Sbjct: 253 MNGKIINGWMIVVDVAKTTPP 273
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%)
Query: 207 RDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ 266
R + S ++ L R +++ L++ F + +V A+V+ +R SG S+GFGFV + T +
Sbjct: 44 RQMAEPSTNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLE 103
Query: 267 DVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSV 300
D ++ M+G ++G + A + P +V
Sbjct: 104 DAAKGIEGMDGKFLEGWVIFAEYARPRPPPGEAV 137
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
L+V L T+ L E F + G VV V+ DRV+ S+GF FV +++DA + I
Sbjct: 53 LFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIEGM 112
Query: 173 DGSQVGGRIVRVNF--PEVPKG 192
DG + G ++ + P P G
Sbjct: 113 DGKFLEGWVIFAEYARPRPPPG 134
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AG---TVVSVEVMYDRVTDRSRGFAFVT 158
RR+YVG L + + F + AG VV+V + +D+ FAFV
Sbjct: 290 RRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDK------KFAFVE 343
Query: 159 MGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF--------- 209
M SV++A A+ + DG G V+V P +GP N N +
Sbjct: 344 MRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGS 402
Query: 210 ---VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ 266
+D +I+ G + + + ++++ L ++ +R++G S+G+ F ++
Sbjct: 403 AGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLA 462
Query: 267 DVEAALKTMNGVEVQGRELRLNLA 290
+ A +NG+++ + L + A
Sbjct: 463 VTDIACAALNGIKMGDKTLTVRRA 486
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AG---TVVSVEVMYDRVTDRSRGFAFVT 158
RR+YVG L + + F + AG VV+V + +D+ FAFV
Sbjct: 290 RRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDK------KFAFVE 343
Query: 159 MGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF--------- 209
M SV++A A+ + DG G V+V P +GP N N +
Sbjct: 344 MRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGS 402
Query: 210 ---VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ 266
+D +I+ G + + + ++++ L ++ +R++G S+G+ F ++
Sbjct: 403 AGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLA 462
Query: 267 DVEAALKTMNGVEVQGRELRLNLA 290
+ A +NG+++ + L + A
Sbjct: 463 VTDIACAALNGIKMGDKTLTVRRA 486
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AG---TVVSVEVMYDRVTDRSRGFAFVT 158
RR+YVG L + + F + AG VV+V + +D+ FAFV
Sbjct: 288 RRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKK------FAFVE 341
Query: 159 MGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF--------- 209
M SV++A A+ + DG G V+V P +GP N N +
Sbjct: 342 MRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGS 400
Query: 210 ---VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ 266
+D +I+ G + + + ++++ L ++ +R++G S+G+ F ++
Sbjct: 401 AGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLA 460
Query: 267 DVEAALKTMNGVEVQGRELRLNLA 290
+ A +NG+++ + L + A
Sbjct: 461 VTDIACAALNGIKMGDKTLTVRRA 484
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AG---TVVSVEVMYDRVTDRSRGFAFVT 158
RR+YVG L + + F + AG VV+V + +D+ FAFV
Sbjct: 288 RRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKK------FAFVE 341
Query: 159 MGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF--------- 209
M SV++A A+ + DG G V+V P +GP N N +
Sbjct: 342 MRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGS 400
Query: 210 ---VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ 266
+D +I+ G + + + ++++ L ++ +R++G S+G+ F ++
Sbjct: 401 AGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLA 460
Query: 267 DVEAALKTMNGVEVQGRELRLNLA 290
+ A +NG+++ + L + A
Sbjct: 461 VTDIACAALNGIKMGDKTLTVRRA 484
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 87/204 (42%), Gaps = 31/204 (15%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVE---------AG---TVVSVEVMYDRVTDRSRGFAFVT 158
RR+YVG L + + F + AG VV+V + +D+ FAFV
Sbjct: 290 RRVYVGGLSPTANEQSVATFFSQVMATIGGNTAGPGDAVVNVYINHDKK------FAFVE 343
Query: 159 MGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDF--------- 209
M SV++A A+ + DG G V+V P +GP N N +
Sbjct: 344 MRSVEEASNAMAL-DGIIFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLGLVGLSPGS 402
Query: 210 ---VDSSHKIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQ 266
+D +I+ G + + + ++++ L ++ +R++G S+G+ F ++
Sbjct: 403 AGGLDGPDRIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLA 462
Query: 267 DVEAALKTMNGVEVQGRELRLNLA 290
+ A +NG+++ + L + A
Sbjct: 463 VTDIACAALNGIKMGDKTLTVRRA 486
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 113 LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRMF 172
LYV L +T L E F + G V S ++ + T SRGFAFVTM + +DA I+
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 173 DGSQVGGRIVRV-----NFPEVPKGGERLVMGPKIRNNNRDF 209
+ S + GR + V P P G L + N RD+
Sbjct: 193 NQSILEGRYITVERSKRKRPRTPTPGHYLGL-----KNTRDY 229
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%)
Query: 216 IYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTM 275
+Y L RV+ +DL++ F+++ + S ++ E + SRGF FVT +TA+D +K +
Sbjct: 133 LYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKYL 192
Query: 276 NGVEVQGRELRLNLAAVKAPSSPS 299
N ++GR + + + K P +P+
Sbjct: 193 NQSILEGRYITVERSKRKRPRTPT 216
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S + L+VGNL +S+ S + + F + G VV V D R +GF V S + A+
Sbjct: 326 SGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDE-EGRFKGFGHVEFASAEAAQS 384
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH----------KIY 217
A+ M +G ++ R VR++ ER P NNN ++ S + +
Sbjct: 385 ALEM-NGQELLQRAVRLDL-----ARERGAFTP---NNNSNYSAQSGGRGQSQTVFVRGF 435
Query: 218 AGNLGWRVSSQDLKDVFA---EQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
NLG L + F +P VS +E SG S+GF ++ F+ + AL+
Sbjct: 436 DKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFE--SGYSKGFAYMDFKDSDSFSKALE- 492
Query: 275 MNGVEVQGRELRLNLA 290
++ E+ G +L ++ A
Sbjct: 493 LHESELDGYQLSVDEA 508
>Medtr4g117350.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:48659959-48661848 | 20130731
Length = 162
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
++++ LP S T LT++F G V V+++ D+ T +S GFA++ D A+ A +
Sbjct: 72 KIFIKGLPLSTTELHLTKVFSMFGEVTQVKLLIDKKTGQSLGFAYIWFVEEDSAQSAAKE 131
Query: 172 FDGSQVGGRIVRVN 185
+G GR + V
Sbjct: 132 MNGKLFYGRFIYVT 145
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S + L+VGNL +S+ S + + F + G VV V D R +GF V S + A+
Sbjct: 338 SGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDE-EGRFKGFGHVEFASAEAAQS 396
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH----------KIY 217
A+ M +G ++ R VR++ ER P NNN ++ S + +
Sbjct: 397 ALEM-NGQELLQRAVRLDL-----ARERGAFTP---NNNSNYSAQSGGRGQSQTVFVRGF 447
Query: 218 AGNLGWRVSSQDLKDVFA---EQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
NLG L + F +P VS +E SG S+GF ++ F+ + AL+
Sbjct: 448 DKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFE--SGYSKGFAYMDFKDSDSFSKALE- 504
Query: 275 MNGVEVQGRELRLNLA 290
++ E+ G +L ++ A
Sbjct: 505 LHESELDGYQLSVDEA 520
>Medtr2g026180.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9464335-9461370 | 20130731
Length = 411
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
++++VG L ++T S F + GT+ V VMYD T R RGF F+T S ++A E +
Sbjct: 36 KKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDS-EEAVEKVL 94
Query: 171 MFDGSQVGGRIVRVNFPEVPK 191
++ G++V V VPK
Sbjct: 95 HKTFHELNGKMVEVK-RAVPK 114
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S + L+VGNL +S+ S + + F + G VV V D R +GF V S + A+
Sbjct: 361 SGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDE-EGRFKGFGHVEFASAEAAQS 419
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH----------KIY 217
A+ M +G ++ R VR++ ER P NNN ++ S + +
Sbjct: 420 ALEM-NGQELLQRAVRLDL-----ARERGAFTP---NNNSNYSAQSGGRGQSQTVFVRGF 470
Query: 218 AGNLGWRVSSQDLKDVFA---EQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
NLG L + F +P VS +E SG S+GF ++ F+ + AL+
Sbjct: 471 DKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFE--SGYSKGFAYMDFKDSDSFSKALE- 527
Query: 275 MNGVEVQGRELRLNLA 290
++ E+ G +L ++ A
Sbjct: 528 LHESELDGYQLSVDEA 543
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 108 SDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKE 167
S + L+VGNL +S+ S + + F + G VV V D R +GF V S + A+
Sbjct: 373 SGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDE-EGRFKGFGHVEFASAEAAQS 431
Query: 168 AIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH----------KIY 217
A+ M +G ++ R VR++ ER P NNN ++ S + +
Sbjct: 432 ALEM-NGQELLQRAVRLDL-----ARERGAFTP---NNNSNYSAQSGGRGQSQTVFVRGF 482
Query: 218 AGNLGWRVSSQDLKDVFA---EQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALKT 274
NLG L + F +P VS +E SG S+GF ++ F+ + AL+
Sbjct: 483 DKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFE--SGYSKGFAYMDFKDSDSFSKALE- 539
Query: 275 MNGVEVQGRELRLNLA 290
++ E+ G +L ++ A
Sbjct: 540 LHESELDGYQLSVDEA 555
>Medtr4g035310.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 267
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 204 NNNRDFVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTF 262
N F D+++ K++ G L W + +K F + ++ A VI ++ +GRS+G+GFVTF
Sbjct: 5 NLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTF 64
Query: 263 ETAQDVEAALKTMNGVE--VQGRELRLNLAAVKAP-SSPSVTEENEGS 307
++ +AA++ + GR NLA++ S PS + G
Sbjct: 65 ---REPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGG 109
>Medtr3g092580.1 | pre-mRNA-splicing factor SF2-like protein | HC |
chr3:42306430-42301242 | 20130731
Length = 380
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 37/194 (19%)
Query: 111 RRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
R +YVGNLP + S++ ++F + G ++ +E+ +V R + FV + DA++AIR
Sbjct: 114 RTIYVGNLPADIRESEIEDLFYKYGRIMEIEL---KVPPRPPCYCFVEFDNARDAEDAIR 170
Query: 171 MFDGSQVGGRIVRVNFPEVPKGGERLVMGP--------------------KIRNNNRDFV 210
DG G +RV E+ GG GP F
Sbjct: 171 GRDGYNFDGCRLRV---ELAHGGR----GPSSSDRRGYGGGGGGGGRGGGGDSAGGGRFG 223
Query: 211 DSSH---KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQD 267
S H ++ L S QDLKD + + A+V RDS + FG V + D
Sbjct: 224 VSRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV--SRDSEGT--FGLVDYTNYDD 279
Query: 268 VEAALKTMNGVEVQ 281
++ A++ ++ E +
Sbjct: 280 MKYAIRKLDDTEFR 293
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 89/197 (45%), Gaps = 27/197 (13%)
Query: 112 RLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIRM 171
++YV +P + + + + +F GT+V V ++ D+ T +G V + D+A AI+
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 172 ------FDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRN-NNRDFVDSSHKIYAGNLGWR 224
F G V V F + + ER + +N RD + K+Y G +
Sbjct: 135 LSNQYTFPGE---SSPVVVRFAD--RKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNE 189
Query: 225 VSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTFETAQDVEAALK------TMNGV 278
S Q+++++F+ G + V+ R+RG+GFV F + AA+K TM G
Sbjct: 190 ASKQEIEEIFSPY-GHIEDVVVL-----RNRGYGFVKFYNREMALAAIKGLDRTFTMRGC 243
Query: 279 EVQGRELRLNLAAVKAP 295
+ + L + A K P
Sbjct: 244 D---QPLIVRFAEPKKP 257
>Medtr4g035310.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:12141158-12149871 | 20130731
Length = 272
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 7/108 (6%)
Query: 204 NNNRDFVDSSH-KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIYERDSGRSRGFGFVTF 262
N F D+++ K++ G L W + +K F + ++ A VI ++ +GRS+G+GFVTF
Sbjct: 5 NLAGQFGDTTYTKVFVGGLAWETQKETMKKYFEQFGEILEAVVITDKATGRSKGYGFVTF 64
Query: 263 ETAQDVEAALKTMNGVE--VQGRELRLNLAAVKAP-SSPSVTEENEGS 307
++ +AA++ + GR NLA++ S PS + G
Sbjct: 65 ---REPDAAMRACVDAAPIIDGRRANCNLASLGVQRSKPSTPKHGGGG 109
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 98 QEEEQKVSTSSDDRR---LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGF 154
+EE ++V R+ ++VG L T L ++F E G V V +M + T +++GF
Sbjct: 198 EEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGF 257
Query: 155 AFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH 214
AF+ +V+ AK A+ + G+ V + S
Sbjct: 258 AFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQ-----------------------DSD 294
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIY----ERDSGRSRGFGFVTFETAQDVEA 270
+Y GN+ + + LK+ G+ + + I D G +RGF F+ F + D
Sbjct: 295 TLYLGNICKTWTKEALKEKLKHY-GVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMD 353
Query: 271 ALKTMNGVEV 280
A K + +V
Sbjct: 354 AFKRLQKRDV 363
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 98 QEEEQKVSTSSDDRR---LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGF 154
+EE ++V R+ ++VG L T L ++F E G V V +M + T +++GF
Sbjct: 198 EEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGF 257
Query: 155 AFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH 214
AF+ +V+ AK A+ + G+ V + S
Sbjct: 258 AFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQ-----------------------DSD 294
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIY----ERDSGRSRGFGFVTFETAQDVEA 270
+Y GN+ + + LK+ G+ + + I D G +RGF F+ F + D
Sbjct: 295 TLYLGNICKTWTKEALKEKLKHY-GVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMD 353
Query: 271 ALKTMNGVEV 280
A K + +V
Sbjct: 354 AFKRLQKRDV 363
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 98 QEEEQKVSTSSDDRR---LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGF 154
+EE ++V R+ ++VG L T L ++F E G V V +M + T +++GF
Sbjct: 199 EEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGF 258
Query: 155 AFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH 214
AF+ +V+ AK A+ + G+ V + S
Sbjct: 259 AFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQ-----------------------DSD 295
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIY----ERDSGRSRGFGFVTFETAQDVEA 270
+Y GN+ + + LK+ G+ + + I D G +RGF F+ F + D
Sbjct: 296 TLYLGNICKTWTKEALKEKLKHY-GVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMD 354
Query: 271 ALKTMNGVEV 280
A K + +V
Sbjct: 355 AFKRLQKRDV 364
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 31/190 (16%)
Query: 98 QEEEQKVSTSSDDRR---LYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGF 154
+EE ++V R+ ++VG L T L ++F E G V V +M + T +++GF
Sbjct: 199 EEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGF 258
Query: 155 AFVTMGSVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSH 214
AF+ +V+ AK A+ + G+ V + S
Sbjct: 259 AFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQ-----------------------DSD 295
Query: 215 KIYAGNLGWRVSSQDLKDVFAEQPGLVSAKVIY----ERDSGRSRGFGFVTFETAQDVEA 270
+Y GN+ + + LK+ G+ + + I D G +RGF F+ F + D
Sbjct: 296 TLYLGNICKTWTKEALKEKLKHY-GVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMD 354
Query: 271 ALKTMNGVEV 280
A K + +V
Sbjct: 355 AFKRLQKRDV 364
>Medtr2g018390.1 | multiple RNA-binding domain protein, putative |
HC | chr2:5813680-5808573 | 20130731
Length = 464
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 12/108 (11%)
Query: 69 EFEVAQDSTDSRQDNPEPEPETETSDKPQQEEEQKVSTSSDDR------RLYVGNLPYSM 122
EF V D +DN P E E + EEE+K+S + RL+V NLPY+
Sbjct: 174 EFAVHDD-----KDNRSPASECEENCGTATEEEEKLSNPEVKKEVPESCRLFVRNLPYTT 228
Query: 123 TSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMGSVDDAKEAIR 170
T +L E F + G+V V ++ D+ T RS+G A++ SV D +R
Sbjct: 229 TEEELEEYFSQFGSVSQVHLVVDKETKRSKGIAYIHF-SVPDFAARVR 275