Miyakogusa Predicted Gene

Lj1g3v4752640.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4752640.2 Non Characterized Hit- tr|I3TAK4|I3TAK4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.73,0,DEOXYRIBONUCLEASE TATDN1,NULL; TATD FAMILY
DEOXYRIBONUCLEASE,TatD family; no description,NULL; Metal,CUFF.33077.2
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g106430.1 | TatD-related deoxyribonuclease | HC | chr7:433...   580   e-166
Medtr6g033025.1 | TatD-related deoxyribonuclease | HC | chr6:103...    55   1e-07

>Medtr7g106430.1 | TatD-related deoxyribonuclease | HC |
           chr7:43317999-43321589 | 20130731
          Length = 319

 Score =  580 bits (1494), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 272/302 (90%), Positives = 287/302 (95%)

Query: 3   AATRMIDIAVNFTDGMFKGIYNGKQYHVADIQNVLTRAWAAGVHRIIVTGGSLEESREAL 62
           AA RMIDIAVNFTDGMFKGIYNGKQ HVADI  VL RAWAAGVHRIIVTGGSL+ESREAL
Sbjct: 2   AAIRMIDIAVNFTDGMFKGIYNGKQCHVADIPTVLNRAWAAGVHRIIVTGGSLQESREAL 61

Query: 63  TIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQSLLSLAKEGIQKGKVVAVGECGLDYD 122
            IAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQ LLSLAKEGIQKGKVVAVGECGLDYD
Sbjct: 62  AIAETDGRLFCTVGVHPTRCKEFEESGDPEKHFQDLLSLAKEGIQKGKVVAVGECGLDYD 121

Query: 123 RLHFCPADIQKKYFERQFELAHITKLPMFLHMREAAADFCEIVERNRDRFTGGVAHSFTG 182
           RLHFCPA+IQK+YFE+QFELA+ITKLPMFLHMR AAADFCEIVE+N+DRF+GGV HSFTG
Sbjct: 122 RLHFCPAEIQKRYFEKQFELAYITKLPMFLHMRAAAADFCEIVEKNKDRFSGGVTHSFTG 181

Query: 183 SKDDCIKLLSFDKMYIGVNGCSLKTTENLDVVKGIPVERMMIETDSPYCEIKNTHAGIGF 242
           S DDCIKLLSFDKMYIG+NGCS+KT ENLDVVKGIPVERMMIETDSPYCEIKNTHAGIGF
Sbjct: 182 SMDDCIKLLSFDKMYIGINGCSMKTAENLDVVKGIPVERMMIETDSPYCEIKNTHAGIGF 241

Query: 243 VRSKWPSKKKEKHDQECVVKGRNEPCLVRQVLEVVAGCKGINDVDDLSRTLYHNTCRVFF 302
           V+S WPSKKKEK+DQEC+VKGRNEPC VRQVLEVVAGCKGINDV +LSRTLYHNTCR+FF
Sbjct: 242 VKSTWPSKKKEKYDQECIVKGRNEPCSVRQVLEVVAGCKGINDVGNLSRTLYHNTCRMFF 301

Query: 303 PQ 304
           P 
Sbjct: 302 PH 303


>Medtr6g033025.1 | TatD-related deoxyribonuclease | HC |
           chr6:10349371-10356081 | 20130731
          Length = 312

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 111/297 (37%), Gaps = 48/297 (16%)

Query: 36  VLTRAWAAGVHRIIVTGGSLEESREALTIAETDGRLFCTVGVHPTRCKEFEESGDPEKHF 95
           ++  A  +GV    V G S ++      ++ T   +  + G+HP    E           
Sbjct: 23  LIKTAQDSGVLHFAVNGVSEQDWFSVKQLSVTYPSVLPSFGLHPWYVAE---------RS 73

Query: 96  QSLLSLAKEGIQKGKVVAVGECGLDY----DRLHFCPADIQKKYFERQFELAHITKLPMF 151
            + L   KE        AVGE GLD      ++ F     Q +   +Q ELA     P  
Sbjct: 74  PNWLKTLKEYFDSTPSAAVGEIGLDKGSQGKKIDFSQ---QVEVLRKQLELAKELNKPAS 130

Query: 152 LHMREAAADFCEIVERNRDRFTGGVAHSFTGSKDDCIKLLSFDKM--YIGVNG--CSLKT 207
           +H   A  D  E+++       G V HS+ GS +   +   F K+  Y   +G   SLK 
Sbjct: 131 VHCVRAYGDLLELMKSVGPFPAGVVLHSYLGSAEMVPE---FSKLGAYFSFSGFLMSLKA 187

Query: 208 TENLDVVKGIPVERMMIETDSPYCEIKNTHAGIGFVRSKWPSKKKEKHDQECVVKGR--- 264
            +   ++K +  +RM++ETD+P    K+    + FV     S   E H Q          
Sbjct: 188 NKAKKMLKMVSSDRMLLETDAPDALPKSNIDSLFFVEGD-TSLDNEVHGQTSTSSSTSDS 246

Query: 265 --------------------NEPCLVRQVLEVVAGCKGINDVDDLSRTLYHNTCRVF 301
                               N P  +  VL+ VA    I   ++L+   Y N  R+F
Sbjct: 247 SAANPSQVLTDASMLPKDTLNHPANIHNVLDYVASMLEITK-EELAELSYQNAVRLF 302