Miyakogusa Predicted Gene

Lj1g3v4730390.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4730390.1 Non Characterized Hit- tr|I0YUZ3|I0YUZ3_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,45.71,0.000003,UNKNOWN PROTEIN,NULL; 34 KDA TRANSCRIPTIONAL
CO-ACTIVATOR-RELATED,NULL; seg,NULL; Med27,Mediator com,CUFF.33060.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g106200.1 | mediator of RNA polymerase II transcription su...   535   e-152
Medtr7g106200.2 | mediator of RNA polymerase II transcription su...   498   e-141

>Medtr7g106200.1 | mediator of RNA polymerase II transcription
           subunit 27 | HC | chr7:43159768-43164789 | 20130731
          Length = 412

 Score =  535 bits (1378), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/317 (81%), Positives = 275/317 (86%)

Query: 1   MEESGVLGESVRSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFT 60
           +EE+GVL E+ RSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFT
Sbjct: 96  LEEAGVLSETARSRKDFWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFT 155

Query: 61  DQKRRFFPHLDDGLETNESASKKFRGSEEVTVDTKEEVSFFRTVQDVLKSLEKDVPNVKI 120
           DQKRRFFPHLDDG+E NES SKK  GSEEVT + KE +SF RT+ DVL+SLEK+VPNVKI
Sbjct: 156 DQKRRFFPHLDDGVEANESDSKKRCGSEEVTFEPKEVMSFLRTLPDVLQSLEKEVPNVKI 215

Query: 121 STFERLDWLKRAXXXXXXXXXXXXXHNYPGSSKLRLGSVGTVAAEKVAVIELLFPSIFRA 180
           STFERLDWLK A             HNY GSSK +LGS+G VA EKVAVIELL PSIFR 
Sbjct: 216 STFERLDWLKCASTLTSSPNESSEEHNYRGSSKRKLGSMGMVAPEKVAVIELLCPSIFRV 275

Query: 181 VISLHPAGSIDPDAVAFFAPDESGSYVHARGFSVHHVNRHITDYAAVALQYFLGNQPETS 240
           VISLHPAGSIDPDAVAFF+PDESGSYVHARG SVHHV RHIT+YA +ALQYFLGNQ ETS
Sbjct: 276 VISLHPAGSIDPDAVAFFSPDESGSYVHARGVSVHHVYRHITEYATIALQYFLGNQAETS 335

Query: 241 LYSLLHWISSYQTLFSRPCSKCSKLLAMDKQTNLLLPPVHRPYWKFSFSKILSNISLKDQ 300
           LYSL+HWI SYQTLFSRPCSKC KLLAMDKQ+NLLL PVHRPYWKFSFSKILS IS KDQ
Sbjct: 336 LYSLVHWICSYQTLFSRPCSKCKKLLAMDKQSNLLLAPVHRPYWKFSFSKILSTISSKDQ 395

Query: 301 NSDTTQAYHTGCLTEEV 317
           NSDTT AYH GC++EEV
Sbjct: 396 NSDTTMAYHIGCISEEV 412


>Medtr7g106200.2 | mediator of RNA polymerase II transcription
           subunit 27 | HC | chr7:43160154-43164789 | 20130731
          Length = 296

 Score =  498 bits (1281), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/296 (81%), Positives = 256/296 (86%)

Query: 22  MPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGLETNESAS 81
           MPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDG+E NES S
Sbjct: 1   MPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDGVEANESDS 60

Query: 82  KKFRGSEEVTVDTKEEVSFFRTVQDVLKSLEKDVPNVKISTFERLDWLKRAXXXXXXXXX 141
           KK  GSEEVT + KE +SF RT+ DVL+SLEK+VPNVKISTFERLDWLK A         
Sbjct: 61  KKRCGSEEVTFEPKEVMSFLRTLPDVLQSLEKEVPNVKISTFERLDWLKCASTLTSSPNE 120

Query: 142 XXXXHNYPGSSKLRLGSVGTVAAEKVAVIELLFPSIFRAVISLHPAGSIDPDAVAFFAPD 201
               HNY GSSK +LGS+G VA EKVAVIELL PSIFR VISLHPAGSIDPDAVAFF+PD
Sbjct: 121 SSEEHNYRGSSKRKLGSMGMVAPEKVAVIELLCPSIFRVVISLHPAGSIDPDAVAFFSPD 180

Query: 202 ESGSYVHARGFSVHHVNRHITDYAAVALQYFLGNQPETSLYSLLHWISSYQTLFSRPCSK 261
           ESGSYVHARG SVHHV RHIT+YA +ALQYFLGNQ ETSLYSL+HWI SYQTLFSRPCSK
Sbjct: 181 ESGSYVHARGVSVHHVYRHITEYATIALQYFLGNQAETSLYSLVHWICSYQTLFSRPCSK 240

Query: 262 CSKLLAMDKQTNLLLPPVHRPYWKFSFSKILSNISLKDQNSDTTQAYHTGCLTEEV 317
           C KLLAMDKQ+NLLL PVHRPYWKFSFSKILS IS KDQNSDTT AYH GC++EEV
Sbjct: 241 CKKLLAMDKQSNLLLAPVHRPYWKFSFSKILSTISSKDQNSDTTMAYHIGCISEEV 296