Miyakogusa Predicted Gene
- Lj1g3v4729110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4729110.1 tr|G7IE43|G7IE43_MEDTR Lysine decarboxylase-like
protein OS=Medicago truncatula GN=MTR_1g105240 PE=4,89.24,0,no
description,NULL; seg,NULL; TIGR00730: TIGR00730 family
protein,Cytokinin riboside
5'-monophospha,NODE_61564_length_628_cov_26.076433.path1.1
(163 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g057020.1 | lysine decarboxylase family protein | HC | chr... 266 7e-72
Medtr2g094790.1 | lysine decarboxylase family protein | HC | chr... 228 2e-60
Medtr0041s0100.1 | cytokinin riboside 5'-monophosphate phosphori... 228 2e-60
Medtr7g101290.1 | cytokinin riboside 5'-monophosphate phosphorib... 228 2e-60
Medtr1g064260.2 | cytokinin riboside 5'-monophosphate phosphorib... 227 3e-60
Medtr1g064260.1 | cytokinin riboside 5'-monophosphate phosphorib... 227 3e-60
Medtr4g058740.1 | lysine decarboxylase family protein | HC | chr... 223 5e-59
Medtr3g113710.1 | cytokinin riboside 5'-monophosphate phosphorib... 221 3e-58
Medtr3g113710.2 | cytokinin riboside 5'-monophosphate phosphorib... 217 3e-57
Medtr1g015830.2 | lysine decarboxylase family protein | HC | chr... 194 2e-50
Medtr1g015830.1 | lysine decarboxylase family protein | HC | chr... 194 2e-50
Medtr3g113710.3 | cytokinin riboside 5'-monophosphate phosphorib... 192 1e-49
Medtr1g024145.1 | lysine decarboxylase family protein | LC | chr... 123 8e-29
Medtr3g055920.1 | lysine decarboxylase family protein | HC | chr... 50 1e-06
>Medtr1g057020.1 | lysine decarboxylase family protein | HC |
chr1:25029449-25024296 | 20130731
Length = 213
Score = 266 bits (680), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 131/158 (82%), Positives = 135/158 (85%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVHDGGRHVLGVIP SLMPREITG PIGEVRAVS+MHQRKAEMARQADAFIALP
Sbjct: 53 MGLVSQAVHDGGRHVLGVIPRSLMPREITGDPIGEVRAVSDMHQRKAEMARQADAFIALP 112
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLE+ITWAQLGIH+KPVGLLNVDGFYNSLLCFIDKAVDEGFISP ARRIIVS
Sbjct: 113 GGYGTLEELLEIITWAQLGIHSKPVGLLNVDGFYNSLLCFIDKAVDEGFISPKARRIIVS 172
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWEDRLTYVTESE 158
A TAK SKLVWE+RL YV ESE
Sbjct: 173 ASTAKELVRELEEHVHEQDEVVSKLVWEERLNYVPESE 210
>Medtr2g094790.1 | lysine decarboxylase family protein | HC |
chr2:40466313-40460901 | 20130731
Length = 209
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/149 (73%), Positives = 123/149 (82%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+SQAV+DGGRHV+GVIP +LMPRE+TG +GEV+AV++MHQRKAEM+R +DAFIALP
Sbjct: 57 MGLISQAVYDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMSRNSDAFIALP 116
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNS L FIDKAV+EGFISPTAR IIVS
Sbjct: 117 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSFLTFIDKAVEEGFISPTARHIIVS 176
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWED 149
APT K ASKL WE+
Sbjct: 177 APTPKELVKNMEEYFPQHERVASKLSWEN 205
>Medtr0041s0100.1 | cytokinin riboside 5'-monophosphate
phosphoribohydrolase | HC | scaffold0041:76506-79946 |
20130731
Length = 220
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/155 (72%), Positives = 126/155 (81%), Gaps = 2/155 (1%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVHDGGRHV+GVIP +LMPRE+TG +GEV+AV++MHQRKAEMA+ +DAFIALP
Sbjct: 58 MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALP 117
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGL+NVDG++NSLL FIDKAV+EGFISP AR IIVS
Sbjct: 118 GGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVS 177
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVW--EDRLTY 153
APTAK ASKL W E +L Y
Sbjct: 178 APTAKELVKKLEEYVPCHEGVASKLSWQMEQQLAY 212
>Medtr7g101290.1 | cytokinin riboside 5'-monophosphate
phosphoribohydrolase | HC | chr7:40889901-40886160 |
20130731
Length = 220
Score = 228 bits (581), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 112/155 (72%), Positives = 126/155 (81%), Gaps = 2/155 (1%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVHDGGRHV+GVIP +LMPRE+TG +GEV+AV++MHQRKAEMA+ +DAFIALP
Sbjct: 58 MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALP 117
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGL+NVDG++NSLL FIDKAV+EGFISP AR IIVS
Sbjct: 118 GGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVS 177
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVW--EDRLTY 153
APTAK ASKL W E +L Y
Sbjct: 178 APTAKELVKKLEEYVPCHEGVASKLSWQMEQQLAY 212
>Medtr1g064260.2 | cytokinin riboside 5'-monophosphate
phosphoribohydrolase | HC | chr1:28271554-28268839 |
20130731
Length = 163
Score = 227 bits (579), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 126/158 (79%), Gaps = 2/158 (1%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVHDGGRHV+GVIP +LMPRE+TG +GEV+AV++MHQRKAEMA+ +DAFIALP
Sbjct: 1 MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALP 60
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGL+NVDG++NSLL FIDKAV+EGFISP AR IIVS
Sbjct: 61 GGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVS 120
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVW--EDRLTYVTE 156
APT+K ASKL W E L Y E
Sbjct: 121 APTSKELVKKLEDYVPCHEGVASKLSWQMEQELAYPEE 158
>Medtr1g064260.1 | cytokinin riboside 5'-monophosphate
phosphoribohydrolase | HC | chr1:28272292-28268839 |
20130731
Length = 219
Score = 227 bits (579), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/158 (70%), Positives = 126/158 (79%), Gaps = 2/158 (1%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAVHDGGRHV+GVIP +LMPRE+TG +GEV+AV++MHQRKAEMA+ +DAFIALP
Sbjct: 57 MGLVSQAVHDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMAKHSDAFIALP 116
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGL+NVDG++NSLL FIDKAV+EGFISP AR IIVS
Sbjct: 117 GGYGTLEELLEVITWAQLGIHDKPVGLVNVDGYFNSLLSFIDKAVEEGFISPNARHIIVS 176
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVW--EDRLTYVTE 156
APT+K ASKL W E L Y E
Sbjct: 177 APTSKELVKKLEDYVPCHEGVASKLSWQMEQELAYPEE 214
>Medtr4g058740.1 | lysine decarboxylase family protein | HC |
chr4:21623654-21628976 | 20130731
Length = 209
Score = 223 bits (569), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 109/148 (73%), Positives = 119/148 (80%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGLVSQAV DGGRHV+GVIP +LMPREITG +GEV+AV+ MHQRKAEMA+ +DAFIALP
Sbjct: 57 MGLVSQAVSDGGRHVIGVIPRTLMPREITGETVGEVKAVAGMHQRKAEMAKHSDAFIALP 116
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLEVITWAQLGIH KPVGLLNVDG+YNSLL FIDKAV+EGFISP AR IIVS
Sbjct: 117 GGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPKARHIIVS 176
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWE 148
AP+ K ASK WE
Sbjct: 177 APSTKELVKKMEEYSPQHERVASKQSWE 204
>Medtr3g113710.1 | cytokinin riboside 5'-monophosphate
phosphoribohydrolase | HC | chr3:53031984-53034614 |
20130731
Length = 221
Score = 221 bits (562), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 108/148 (72%), Positives = 119/148 (80%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MG +SQ V+DGGRHVLGVIP +LM REITG +GEVRAVS+MHQRKAEMARQADAFIALP
Sbjct: 59 MGRISQVVYDGGRHVLGVIPKTLMLREITGETVGEVRAVSDMHQRKAEMARQADAFIALP 118
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLE+ITWAQLGIH KPVGLLNVDG+YNSLL F+DKAVDEGF++P AR IIVS
Sbjct: 119 GGYGTLEELLEIITWAQLGIHDKPVGLLNVDGYYNSLLAFMDKAVDEGFVTPAARHIIVS 178
Query: 121 APTAKXXXXXXXXXXXXXXXFASKLVWE 148
A TA+ A KL WE
Sbjct: 179 AHTAQDLMCKLEEYVPKHCGVAPKLSWE 206
>Medtr3g113710.2 | cytokinin riboside 5'-monophosphate
phosphoribohydrolase | HC | chr3:53032054-53034614 |
20130731
Length = 238
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 103/125 (82%), Positives = 114/125 (91%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MG +SQ V+DGGRHVLGVIP +LM REITG +GEVRAVS+MHQRKAEMARQADAFIALP
Sbjct: 59 MGRISQVVYDGGRHVLGVIPKTLMLREITGETVGEVRAVSDMHQRKAEMARQADAFIALP 118
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGTLEELLE+ITWAQLGIH KPVGLLNVDG+YNSLL F+DKAVDEGF++P AR IIVS
Sbjct: 119 GGYGTLEELLEIITWAQLGIHDKPVGLLNVDGYYNSLLAFMDKAVDEGFVTPAARHIIVS 178
Query: 121 APTAK 125
A TA+
Sbjct: 179 AHTAQ 183
>Medtr1g015830.2 | lysine decarboxylase family protein | HC |
chr1:4078639-4074793 | 20130731
Length = 162
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 108/125 (86%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+SQ +++GG HVLGVIP +LMP EI+G +GEVR VS+MH+RKA MA++A+AFIALP
Sbjct: 1 MGLISQKMYNGGCHVLGVIPKALMPHEISGEAVGEVRIVSDMHERKAAMAQEAEAFIALP 60
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGT+EELLE+ITWAQLGIH KPVGLLNVDG+YNSLL D V+EGFI P+AR I+VS
Sbjct: 61 GGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVEEGFIKPSARSIVVS 120
Query: 121 APTAK 125
A +AK
Sbjct: 121 ASSAK 125
>Medtr1g015830.1 | lysine decarboxylase family protein | HC |
chr1:4079142-4074793 | 20130731
Length = 214
Score = 194 bits (494), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 89/125 (71%), Positives = 108/125 (86%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+SQ +++GG HVLGVIP +LMP EI+G +GEVR VS+MH+RKA MA++A+AFIALP
Sbjct: 53 MGLISQKMYNGGCHVLGVIPKALMPHEISGEAVGEVRIVSDMHERKAAMAQEAEAFIALP 112
Query: 61 GGYGTLEELLEVITWAQLGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVS 120
GGYGT+EELLE+ITWAQLGIH KPVGLLNVDG+YNSLL D V+EGFI P+AR I+VS
Sbjct: 113 GGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNSLLALFDNGVEEGFIKPSARSIVVS 172
Query: 121 APTAK 125
A +AK
Sbjct: 173 ASSAK 177
>Medtr3g113710.3 | cytokinin riboside 5'-monophosphate
phosphoribohydrolase | HC | chr3:53032998-53034548 |
20130731
Length = 155
Score = 192 bits (488), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 95/131 (72%), Positives = 104/131 (79%)
Query: 18 VIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALPGGYGTLEELLEVITWAQ 77
VIP +LM REITG +GEVRAVS+MHQRKAEMARQADAFIALPGGYGTLEELLE+ITWAQ
Sbjct: 10 VIPKTLMLREITGETVGEVRAVSDMHQRKAEMARQADAFIALPGGYGTLEELLEIITWAQ 69
Query: 78 LGIHTKPVGLLNVDGFYNSLLCFIDKAVDEGFISPTARRIIVSAPTAKXXXXXXXXXXXX 137
LGIH KPVGLLNVDG+YNSLL F+DKAVDEGF++P AR IIVSA TA+
Sbjct: 70 LGIHDKPVGLLNVDGYYNSLLAFMDKAVDEGFVTPAARHIIVSAHTAQDLMCKLEEYVPK 129
Query: 138 XXXFASKLVWE 148
A KL WE
Sbjct: 130 HCGVAPKLSWE 140
>Medtr1g024145.1 | lysine decarboxylase family protein | LC |
chr1:7882927-7885168 | 20130731
Length = 257
Score = 123 bits (308), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 65/74 (87%)
Query: 1 MGLVSQAVHDGGRHVLGVIPTSLMPREITGAPIGEVRAVSNMHQRKAEMARQADAFIALP 60
MGL+SQ V DGG ++GVIP +L+PREI G +GEVRAVS+MHQRKAEMARQADAFIALP
Sbjct: 179 MGLISQVVFDGGSQIIGVIPKTLVPREIIGESVGEVRAVSDMHQRKAEMARQADAFIALP 238
Query: 61 GGYGTLEELLEVIT 74
GGY TLEELLEVIT
Sbjct: 239 GGYDTLEELLEVIT 252
>Medtr3g055920.1 | lysine decarboxylase family protein | HC |
chr3:22202867-22206617 | 20130731
Length = 312
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 55 AFIALPGGYGTLEELLEVITWAQLG-IHTK---PVGLLNVDGFYNSLLCFIDKAVDEGFI 110
A +ALPGG GTL+EL E++ QL I +K P L+N D FY+ LL F+D D G +
Sbjct: 204 AVVALPGGIGTLDELFEMLALIQLERIGSKLPVPFLLMNYDSFYSKLLDFLDVCEDRGTV 263
Query: 111 S 111
S
Sbjct: 264 S 264