Miyakogusa Predicted Gene
- Lj1g3v4717500.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4717500.2 Non Characterized Hit- tr|B9FQY8|B9FQY8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,40.51,3e-17,seg,NULL; RNA recognition motif,RNA recognition
motif domain, eukaryote; RNA recognition motif,RNA r,CUFF.33106.2
(955 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 488 e-137
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 488 e-137
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 488 e-137
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 488 e-137
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 438 e-122
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 438 e-122
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 438 e-122
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 397 e-110
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 397 e-110
Medtr1g113830.1 | Serine/Threonine-kinase ATR-like protein | HC ... 380 e-105
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 350 5e-96
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 350 5e-96
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 350 5e-96
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 142 2e-33
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 142 2e-33
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 142 2e-33
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 121 3e-27
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 121 3e-27
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 121 3e-27
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 121 3e-27
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 94 6e-19
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 83 1e-15
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 83 2e-15
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 82 2e-15
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 79 2e-14
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 77 1e-13
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 74 7e-13
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 73 2e-12
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 71 4e-12
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 71 4e-12
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 70 9e-12
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 2e-10
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 64 6e-10
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 63 1e-09
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 3e-09
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 4e-09
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 61 6e-09
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 60 9e-09
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 60 9e-09
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 2e-08
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 3e-08
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 3e-08
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 59 3e-08
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 5e-08
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 5e-08
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 58 5e-08
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 57 6e-08
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 6e-08
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 6e-08
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 57 7e-08
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 8e-08
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 57 1e-07
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 1e-07
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 1e-07
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 2e-07
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 2e-07
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 2e-07
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 3e-07
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 55 4e-07
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 4e-07
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 4e-07
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 4e-07
Medtr7g109810.2 | flowering time control FCA-like protein | HC |... 54 5e-07
Medtr7g109810.3 | flowering time control FCA-like protein | HC |... 54 6e-07
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 54 6e-07
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 54 1e-06
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 54 1e-06
Medtr7g109810.1 | flowering time control FCA-like protein | HC |... 53 1e-06
Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 1e-06
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 1e-06
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 52 2e-06
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 52 2e-06
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 3e-06
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 3e-06
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 3e-06
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 7e-06
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 51 7e-06
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/339 (73%), Positives = 277/339 (81%), Gaps = 5/339 (1%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
DE +KKKHAELLALPPH SEVYIGGI + SE+DLRVFCQSVGEV+EVR+MK KE+ K
Sbjct: 83 DEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---K 139
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFV FKTKELAS+A++ELNNSEFKG+KIKCS SQ KHRLFIG++PK+WTVEDMKKVVA
Sbjct: 140 GYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVA 199
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
VGPGVIS+ELLKD QSS RNRGFAFIEY+NHACAEYSRQKMSNSNFKL+NN VSWA+
Sbjct: 200 KVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWAD 259
Query: 362 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 421
PRNSESS+ SQVKAVYVKNLPENITQ+ LK+LFEHHGKITKV LPPAK+GQEKSR+GFVH
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVH 319
Query: 422 FSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLXXXX 481
F+DRSSAMKALKNTEKYEI+G+ LECSLAKP+ADQ+SSG SNS VLP YP L
Sbjct: 320 FADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGM 379
Query: 482 XXXXXXXXXXXXXXXXXXQPLMYGMEVRFC--TVLPNLL 518
PLMYG T++P LL
Sbjct: 380 VGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLL 418
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/339 (73%), Positives = 277/339 (81%), Gaps = 5/339 (1%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
DE +KKKHAELLALPPH SEVYIGGI + SE+DLRVFCQSVGEV+EVR+MK KE+ K
Sbjct: 83 DEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---K 139
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFV FKTKELAS+A++ELNNSEFKG+KIKCS SQ KHRLFIG++PK+WTVEDMKKVVA
Sbjct: 140 GYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVA 199
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
VGPGVIS+ELLKD QSS RNRGFAFIEY+NHACAEYSRQKMSNSNFKL+NN VSWA+
Sbjct: 200 KVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWAD 259
Query: 362 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 421
PRNSESS+ SQVKAVYVKNLPENITQ+ LK+LFEHHGKITKV LPPAK+GQEKSR+GFVH
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVH 319
Query: 422 FSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLXXXX 481
F+DRSSAMKALKNTEKYEI+G+ LECSLAKP+ADQ+SSG SNS VLP YP L
Sbjct: 320 FADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGM 379
Query: 482 XXXXXXXXXXXXXXXXXXQPLMYGMEVRFC--TVLPNLL 518
PLMYG T++P LL
Sbjct: 380 VGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLL 418
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/339 (73%), Positives = 277/339 (81%), Gaps = 5/339 (1%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
DE +KKKHAELLALPPH SEVYIGGI + SE+DLRVFCQSVGEV+EVR+MK KE+ K
Sbjct: 83 DEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---K 139
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFV FKTKELAS+A++ELNNSEFKG+KIKCS SQ KHRLFIG++PK+WTVEDMKKVVA
Sbjct: 140 GYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVA 199
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
VGPGVIS+ELLKD QSS RNRGFAFIEY+NHACAEYSRQKMSNSNFKL+NN VSWA+
Sbjct: 200 KVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWAD 259
Query: 362 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 421
PRNSESS+ SQVKAVYVKNLPENITQ+ LK+LFEHHGKITKV LPPAK+GQEKSR+GFVH
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVH 319
Query: 422 FSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLXXXX 481
F+DRSSAMKALKNTEKYEI+G+ LECSLAKP+ADQ+SSG SNS VLP YP L
Sbjct: 320 FADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGM 379
Query: 482 XXXXXXXXXXXXXXXXXXQPLMYGMEVRFC--TVLPNLL 518
PLMYG T++P LL
Sbjct: 380 VGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLL 418
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 488 bits (1256), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/339 (73%), Positives = 277/339 (81%), Gaps = 5/339 (1%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
DE +KKKHAELLALPPH SEVYIGGI + SE+DLRVFCQSVGEV+EVR+MK KE+ K
Sbjct: 83 DEADKKKHAELLALPPHGSEVYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKEA---K 139
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFV FKTKELAS+A++ELNNSEFKG+KIKCS SQ KHRLFIG++PK+WTVEDMKKVVA
Sbjct: 140 GYAFVTFKTKELASKALKELNNSEFKGRKIKCSPSQVKHRLFIGSVPKEWTVEDMKKVVA 199
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
VGPGVIS+ELLKD QSS RNRGFAFIEY+NHACAEYSRQKMSNSNFKL+NN VSWA+
Sbjct: 200 KVGPGVISVELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNFKLDNNDAIVSWAD 259
Query: 362 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 421
PRNSESS+ SQVKAVYVKNLPENITQ+ LK+LFEHHGKITKV LPPAK+GQEKSR+GFVH
Sbjct: 260 PRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYGFVH 319
Query: 422 FSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLXXXX 481
F+DRSSAMKALKNTEKYEI+G+ LECSLAKP+ADQ+SSG SNS VLP YP L
Sbjct: 320 FADRSSAMKALKNTEKYEINGQTLECSLAKPQADQKSSGASNSFNSAVLPAYPPPLGYGM 379
Query: 482 XXXXXXXXXXXXXXXXXXQPLMYGMEVRFC--TVLPNLL 518
PLMYG T++P LL
Sbjct: 380 VGGGYGAVGAGYGAAGFAPPLMYGPGATPAGMTMMPMLL 418
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/324 (63%), Positives = 261/324 (80%), Gaps = 1/324 (0%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
D+ EKKKHAELL+LPPH SEVY+GGI + EDL+ FC+ +GEV +VRIMK K++ E K
Sbjct: 92 DDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENK 151
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
G+AFV ++ ELAS+AIEELNN+EFKG+KIKCS+SQAK+RLFIGNIP+ W +D+KKVV
Sbjct: 152 GFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
D+GPGV ++EL+KD+++ NRGFAFI+Y+N+ CAEY RQKM + +FKL +N+PTVSWA+
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWAD 271
Query: 362 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 421
P+NS+SSA SQVKAVYVKNLP+N+TQ+ LKKLFEHHGKITKVVLPP KSGQEK+R GFVH
Sbjct: 272 PKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVH 331
Query: 422 FSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLXXXX 481
F++RS+AMKALKNTE+YE+DG+NLECSLAKP+ADQ++ SN+Q +LP+YP +
Sbjct: 332 FAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAV-VSNTQTQGLLPSYPPPVGYGL 390
Query: 482 XXXXXXXXXXXXXXXXXXQPLMYG 505
QPLMYG
Sbjct: 391 VGNPYGALGAGYGAPGLAQPLMYG 414
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/324 (63%), Positives = 261/324 (80%), Gaps = 1/324 (0%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
D+ EKKKHAELL+LPPH SEVY+GGI + EDL+ FC+ +GEV +VRIMK K++ E K
Sbjct: 92 DDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENK 151
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
G+AFV ++ ELAS+AIEELNN+EFKG+KIKCS+SQAK+RLFIGNIP+ W +D+KKVV
Sbjct: 152 GFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
D+GPGV ++EL+KD+++ NRGFAFI+Y+N+ CAEY RQKM + +FKL +N+PTVSWA+
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWAD 271
Query: 362 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 421
P+NS+SSA SQVKAVYVKNLP+N+TQ+ LKKLFEHHGKITKVVLPP KSGQEK+R GFVH
Sbjct: 272 PKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVH 331
Query: 422 FSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLXXXX 481
F++RS+AMKALKNTE+YE+DG+NLECSLAKP+ADQ++ SN+Q +LP+YP +
Sbjct: 332 FAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAV-VSNTQTQGLLPSYPPPVGYGL 390
Query: 482 XXXXXXXXXXXXXXXXXXQPLMYG 505
QPLMYG
Sbjct: 391 VGNPYGALGAGYGAPGLAQPLMYG 414
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 438 bits (1126), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/324 (63%), Positives = 261/324 (80%), Gaps = 1/324 (0%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
D+ EKKKHAELL+LPPH SEVY+GGI + EDL+ FC+ +GEV +VRIMK K++ E K
Sbjct: 92 DDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENK 151
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
G+AFV ++ ELAS+AIEELNN+EFKG+KIKCS+SQAK+RLFIGNIP+ W +D+KKVV
Sbjct: 152 GFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
D+GPGV ++EL+KD+++ NRGFAFI+Y+N+ CAEY RQKM + +FKL +N+PTVSWA+
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWAD 271
Query: 362 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 421
P+NS+SSA SQVKAVYVKNLP+N+TQ+ LKKLFEHHGKITKVVLPP KSGQEK+R GFVH
Sbjct: 272 PKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVH 331
Query: 422 FSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLXXXX 481
F++RS+AMKALKNTE+YE+DG+NLECSLAKP+ADQ++ SN+Q +LP+YP +
Sbjct: 332 FAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAV-VSNTQTQGLLPSYPPPVGYGL 390
Query: 482 XXXXXXXXXXXXXXXXXXQPLMYG 505
QPLMYG
Sbjct: 391 VGNPYGALGAGYGAPGLAQPLMYG 414
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 192/326 (58%), Positives = 249/326 (76%), Gaps = 1/326 (0%)
Query: 181 NDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGER 240
+D+ EKKKHAELL+LP H SEVY+GGI + EDL+ FC+ +GEV +VRI K K++ E
Sbjct: 331 DDDDEKKKHAELLSLPHHKSEVYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASEN 390
Query: 241 KGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVV 300
+G+AFV +++ ELAS+AI+ELNN+EFK KIKCS SQAK RLFIGNIP+ W +D+KKVV
Sbjct: 391 RGFAFVTYRSIELASKAIKELNNTEFKAGKIKCSKSQAKSRLFIGNIPRSWGEKDLKKVV 450
Query: 301 ADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWA 360
+D+GPGV ++EL+KD+++ NRG+AFI+Y+N+ CAEYSRQKM++ +FKL +N PTV+WA
Sbjct: 451 SDIGPGVTAVELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWA 510
Query: 361 EPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFV 420
EP+N++SSA SQVK VYVKNLP+N+T++ LKKLFEHHGKITKVVLPP K GQEK+R GFV
Sbjct: 511 EPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFV 570
Query: 421 HFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGTSNSQKPVVLPTYPHRLXXX 480
HF++RS+AMKALKNTEKY +DG+ LECSLAK +AD ++ SN Q LP YP +
Sbjct: 571 HFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAV-VSNIQTQGSLPRYPPHVGYG 629
Query: 481 XXXXXXXXXXXXXXXXXXXQPLMYGM 506
QP YG+
Sbjct: 630 LDGNPYGVLGAGYGAPGLAQPFTYGL 655
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 397 bits (1021), Expect = e-110, Method: Compositional matrix adjust.
Identities = 181/261 (69%), Positives = 228/261 (87%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
D+ EKKKHAELL+LPPH SEVY+GGI + EDL+ FC+ +GEV +VRIMK K++ E K
Sbjct: 92 DDDEKKKHAELLSLPPHKSEVYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENK 151
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
G+AFV ++ ELAS+AIEELNN+EFKG+KIKCS+SQAK+RLFIGNIP+ W +D+KKVV
Sbjct: 152 GFAFVTYRNVELASKAIEELNNTEFKGRKIKCSTSQAKNRLFIGNIPRSWGEKDLKKVVT 211
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
D+GPGV ++EL+KD+++ NRGFAFI+Y+N+ CAEY RQKM + +FKL +N+PTVSWA+
Sbjct: 212 DIGPGVTAVELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWAD 271
Query: 362 PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVH 421
P+NS+SSA SQVKAVYVKNLP+N+TQ+ LKKLFEHHGKITKVVLPP KSGQEK+R GFVH
Sbjct: 272 PKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVH 331
Query: 422 FSDRSSAMKALKNTEKYEIDG 442
F++RS+AMKALKNTE+YE+DG
Sbjct: 332 FAERSNAMKALKNTERYELDG 352
>Medtr1g113830.1 | Serine/Threonine-kinase ATR-like protein | HC |
chr1:51360115-51345718 | 20130731
Length = 2715
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/340 (57%), Positives = 245/340 (72%), Gaps = 19/340 (5%)
Query: 506 MEVRFCTVLPNLLHAYVVPSSSGNNDREVIAVVKLISHTARNFPGVFFLGKPSAVLPVLA 565
+ +RF ++ NLLH Y +PSS+G ++EV A V+LIS+TA+N PGVF+ GK + VLPV+A
Sbjct: 34 LNIRFRRIILNLLHTYFLPSSAGL-EKEVGAAVRLISYTAKNNPGVFYHGKATGVLPVIA 92
Query: 566 DILPSYADPLFRSRHRVFFEALGSLLSLFRSGARDASTHFFLDPMLLILDTLDV----NA 621
+LP ADPLF SRH +FFE +GSLLS RS RD HFF+D M LI D L V +
Sbjct: 93 PLLPFLADPLFSSRHGIFFETIGSLLSSLRSADRDFYRHFFVDCMFLIQDILHVASLSDG 152
Query: 622 PFSLTFNCFPKSFNGIEDNPSTNKPVDGCGLLVDISDQSRWLPFATYTLKLLSKCMTEGT 681
+ CF K+F+G+ED P NKPVDGCGLL+D++ +SR PFAT+ LKLLSKC+TEGT
Sbjct: 153 SSRVMVKCFSKTFSGVEDLPPANKPVDGCGLLIDLTGKSRLQPFATWILKLLSKCLTEGT 212
Query: 682 LYVEGLIRSSFVSAACCFLCYRDTDLHMACLDFLHIIATVINYDIIPYQNLIRSIATILS 741
L VEGLI +SFVS+AC LCY D+DLHMAC F+HIIATV +Y++IPYQNLIRSI TIL+
Sbjct: 213 LCVEGLIHASFVSSACSLLCYGDSDLHMACFGFVHIIATVTSYELIPYQNLIRSIVTILN 272
Query: 742 LEKEGLPVFRNTAYDSWIVVCLNALYSICPEDIVKLTASDLVSVFFQSMWRTKSQQLKVN 801
L+KEGLP FRN AYDS + VCLN LYS CPEDIVKLTA+DLV VFF S+ RTKSQ+LKV
Sbjct: 273 LDKEGLPSFRNMAYDSSLGVCLNTLYSSCPEDIVKLTATDLVGVFFGSLRRTKSQELKVA 332
Query: 802 TRACFSLEQLTLLFP----------SVFCHGKPTAVLPVL 831
C + ++ + P S CH +P LP++
Sbjct: 333 L--CSAYVRIAKVCPPHVWKPEHLISTLCHPEP--CLPLI 368
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/144 (54%), Positives = 96/144 (66%), Gaps = 4/144 (2%)
Query: 816 PSVFCHGKPTAVLPVLAEILSFYADPLFRSRHIVFFEXXXXXXXXXXXXXXDAYGHFFLD 875
P VF HGK T VLPV+A +L F ADPLF SRH +FFE D Y HFF+D
Sbjct: 76 PGVFYHGKATGVLPVIAPLLPFLADPLFSSRHGIFFETIGSLLSSLRSADRDFYRHFFVD 135
Query: 876 SMLLILDTLDV----NAPSSLTFKCFPKSFNGIEDIPSINKLVDGCGLLVDISDQSRWLP 931
M LI D L V + S + KCF K+F+G+ED+P NK VDGCGLL+D++ +SR P
Sbjct: 136 CMFLIQDILHVASLSDGSSRVMVKCFSKTFSGVEDLPPANKPVDGCGLLIDLTGKSRLQP 195
Query: 932 FATYTLKLLSKCMTDGTLYVEGLI 955
FAT+ LKLLSKC+T+GTL VEGLI
Sbjct: 196 FATWILKLLSKCLTEGTLCVEGLI 219
Score = 132 bits (331), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 96/144 (66%), Gaps = 5/144 (3%)
Query: 36 MAKANLSSLPERI----AASSSTLTPNNPSGEALEVRFCTVLPNLLHAYVVPSSSRNNDR 91
M +A ++L E+I ASSS + N E L +RF ++ NLLH Y +PSS+ ++
Sbjct: 1 MTRATFANLVEQIREGITASSSPTSNNYSDDEVLNIRFRRIILNLLHTYFLPSSA-GLEK 59
Query: 92 EVIAVVKLISHTARNFPGVFFLGKPSAVLPVLADILPSYADPLFRSRHRVFFEALGSLLS 151
EV A V+LIS+TA+N PGVF+ GK + VLPV+A +LP ADPLF SRH +FFE +GSLLS
Sbjct: 60 EVGAAVRLISYTAKNNPGVFYHGKATGVLPVIAPLLPFLADPLFSSRHGIFFETIGSLLS 119
Query: 152 LFRSGARDASTHFFLDPMLLILEM 175
RS RD HFF+D M LI ++
Sbjct: 120 SLRSADRDFYRHFFVDCMFLIQDI 143
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 350 bits (897), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 158/281 (56%), Positives = 225/281 (80%), Gaps = 3/281 (1%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
DE E++KH ELL+ PPH SEV+IGG+ + S++D+R C+ +G++ E++++K +E+GE K
Sbjct: 86 DEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESK 145
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFV +KTKE+A +AI++++N EFKGK ++C S+ KHRLFIGNIPK WT ++ +K V
Sbjct: 146 GYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVE 205
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
VGPGV SI+L+KD Q+ RNRGFAF+ YYN+ACA++SRQKMS+ FKL+ PTV+WA+
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWAD 265
Query: 362 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 419
P+ S +S+A SQVKA+YVKN+PEN+T + LK+LF HG++TKVV+PP K+ K FGF
Sbjct: 266 PKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASG-KRDFGF 324
Query: 420 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSG 460
+H+++RSSA+KA+K TEKYEIDG+ LE +AKP+A+++ G
Sbjct: 325 IHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDG 365
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 350 bits (897), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 158/281 (56%), Positives = 225/281 (80%), Gaps = 3/281 (1%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
DE E++KH ELL+ PPH SEV+IGG+ + S++D+R C+ +G++ E++++K +E+GE K
Sbjct: 86 DEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESK 145
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFV +KTKE+A +AI++++N EFKGK ++C S+ KHRLFIGNIPK WT ++ +K V
Sbjct: 146 GYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVE 205
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
VGPGV SI+L+KD Q+ RNRGFAF+ YYN+ACA++SRQKMS+ FKL+ PTV+WA+
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWAD 265
Query: 362 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 419
P+ S +S+A SQVKA+YVKN+PEN+T + LK+LF HG++TKVV+PP K+ K FGF
Sbjct: 266 PKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASG-KRDFGF 324
Query: 420 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSG 460
+H+++RSSA+KA+K TEKYEIDG+ LE +AKP+A+++ G
Sbjct: 325 IHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDG 365
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 350 bits (897), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 158/281 (56%), Positives = 225/281 (80%), Gaps = 3/281 (1%)
Query: 182 DEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERK 241
DE E++KH ELL+ PPH SEV+IGG+ + S++D+R C+ +G++ E++++K +E+GE K
Sbjct: 86 DEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESK 145
Query: 242 GYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVA 301
GYAFV +KTKE+A +AI++++N EFKGK ++C S+ KHRLFIGNIPK WT ++ +K V
Sbjct: 146 GYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETKHRLFIGNIPKTWTEDEFRKAVE 205
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
VGPGV SI+L+KD Q+ RNRGFAF+ YYN+ACA++SRQKMS+ FKL+ PTV+WA+
Sbjct: 206 GVGPGVESIDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWAD 265
Query: 362 PRNS--ESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGF 419
P+ S +S+A SQVKA+YVKN+PEN+T + LK+LF HG++TKVV+PP K+ K FGF
Sbjct: 266 PKTSPDQSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASG-KRDFGF 324
Query: 420 VHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSG 460
+H+++RSSA+KA+K TEKYEIDG+ LE +AKP+A+++ G
Sbjct: 325 IHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKKPDG 365
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 5/247 (2%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
E+++GG+ + +EEDL+ Q +GEV EVR+ K + + +GYA V F KE A +A+ E
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 261 LNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVG-PGVISIELLKDLQSS 319
+ N +GK+ S S+ LF+GNI WT E +K+ + D G GV +I L+ D+Q
Sbjct: 479 MKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHE 538
Query: 320 GRNRGFAFIEYYNHACA--EYSRQKMSNSNFKLENNAPTVSWAEP-RNSESSAVSQVKAV 376
G +RGFAF+E+ HA A Y R + F V++AEP R + ++QVK+V
Sbjct: 539 GLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSV 598
Query: 377 YVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTE 436
++ LP + +D +++ + +G+I K+VL S ++ GFV FS +A+ +
Sbjct: 599 FINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVN 658
Query: 437 KYEI-DG 442
K E+ DG
Sbjct: 659 KSELGDG 665
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 140/247 (56%), Gaps = 5/247 (2%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
E+++GG+ + +EEDL+ Q +GEV EVR+ K + + +GYA V F KE A +A+ E
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 261 LNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVG-PGVISIELLKDLQSS 319
+ N +GK+ S S+ LF+GNI WT E +K+ + D G GV +I L+ D+Q
Sbjct: 479 MKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHE 538
Query: 320 GRNRGFAFIEYYNHACA--EYSRQKMSNSNFKLENNAPTVSWAEP-RNSESSAVSQVKAV 376
G +RGFAF+E+ HA A Y R + F V++AEP R + ++QVK+V
Sbjct: 539 GLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSV 598
Query: 377 YVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTE 436
++ LP + +D +++ + +G+I K+VL S ++ GFV FS +A+ +
Sbjct: 599 FINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVN 658
Query: 437 KYEI-DG 442
K E+ DG
Sbjct: 659 KSELGDG 665
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 142 bits (358), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/244 (35%), Positives = 138/244 (56%), Gaps = 4/244 (1%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
E+++GG+ + +EEDL+ Q +GEV EVR+ K + + +GYA V F KE A +A+ E
Sbjct: 419 EIFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSE 478
Query: 261 LNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVG-PGVISIELLKDLQSS 319
+ N +GK+ S S+ LF+GNI WT E +K+ + D G GV +I L+ D+Q
Sbjct: 479 MKNPVIRGKRCGTSPSEDNDTLFLGNICNTWTKEAVKQKLKDYGVEGVENITLVPDVQHE 538
Query: 320 GRNRGFAFIEYYNHACA--EYSRQKMSNSNFKLENNAPTVSWAEP-RNSESSAVSQVKAV 376
G +RGFAF+E+ HA A Y R + F V++AEP R + ++QVK+V
Sbjct: 539 GLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEIMAQVKSV 598
Query: 377 YVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTE 436
++ LP + +D +++ + +G+I K+VL S ++ GFV FS +A+ +
Sbjct: 599 FINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAALACVDGVN 658
Query: 437 KYEI 440
K E+
Sbjct: 659 KSEL 662
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 152/280 (54%), Gaps = 11/280 (3%)
Query: 183 EVEKKKHAELLALPPHSSE--VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGER 240
+V++++H E++ E V++GG+ + +E+DLR VG V+EVR+M ++ +
Sbjct: 196 DVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKN 255
Query: 241 KGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVV 300
KG+AF+ F+ E A +A+ EL N GK+ + SQ L++GNI K WT E +K+ +
Sbjct: 256 KGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKL 315
Query: 301 ADVG-PGVISIELLKDLQSSGRNRGFAFIEYYNHACA--EYSRQKMSNSNFKLENNAPTV 357
G V I L++D G NRGFAF+E+ + + A + R + + F ++ A V
Sbjct: 316 KHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPA-KV 374
Query: 358 SWAEP-RNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR 416
S+A+ + +SQVK V++ LP + +D ++ L + +G++ K+ L +
Sbjct: 375 SFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKD 434
Query: 417 FGFVHFSDRSSAMK---ALKNTEKYEIDGK-NLECSLAKP 452
+GFV F +A++ ++ TE E D K + L++P
Sbjct: 435 YGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRP 474
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 152/280 (54%), Gaps = 11/280 (3%)
Query: 183 EVEKKKHAELLALPPHSSE--VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGER 240
+V++++H E++ E V++GG+ + +E+DLR VG V+EVR+M ++ +
Sbjct: 196 DVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKN 255
Query: 241 KGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVV 300
KG+AF+ F+ E A +A+ EL N GK+ + SQ L++GNI K WT E +K+ +
Sbjct: 256 KGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKL 315
Query: 301 ADVG-PGVISIELLKDLQSSGRNRGFAFIEYYNHACA--EYSRQKMSNSNFKLENNAPTV 357
G V I L++D G NRGFAF+E+ + + A + R + + F ++ A V
Sbjct: 316 KHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPA-KV 374
Query: 358 SWAEP-RNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR 416
S+A+ + +SQVK V++ LP + +D ++ L + +G++ K+ L +
Sbjct: 375 SFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKD 434
Query: 417 FGFVHFSDRSSAMK---ALKNTEKYEIDGK-NLECSLAKP 452
+GFV F +A++ ++ TE E D K + L++P
Sbjct: 435 YGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRP 474
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 152/280 (54%), Gaps = 11/280 (3%)
Query: 183 EVEKKKHAELLALPPHSSE--VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGER 240
+V++++H E++ E V++GG+ + +E+DLR VG V+EVR+M ++ +
Sbjct: 195 DVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKN 254
Query: 241 KGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVV 300
KG+AF+ F+ E A +A+ EL N GK+ + SQ L++GNI K WT E +K+ +
Sbjct: 255 KGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKL 314
Query: 301 ADVG-PGVISIELLKDLQSSGRNRGFAFIEYYNHACA--EYSRQKMSNSNFKLENNAPTV 357
G V I L++D G NRGFAF+E+ + + A + R + + F ++ A V
Sbjct: 315 KHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPA-KV 373
Query: 358 SWAEP-RNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR 416
S+A+ + +SQVK V++ LP + +D ++ L + +G++ K+ L +
Sbjct: 374 SFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKD 433
Query: 417 FGFVHFSDRSSAMK---ALKNTEKYEIDGK-NLECSLAKP 452
+GFV F +A++ ++ TE E D K + L++P
Sbjct: 434 YGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRP 473
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 152/280 (54%), Gaps = 11/280 (3%)
Query: 183 EVEKKKHAELLALPPHSSE--VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGER 240
+V++++H E++ E V++GG+ + +E+DLR VG V+EVR+M ++ +
Sbjct: 195 DVDEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKN 254
Query: 241 KGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVV 300
KG+AF+ F+ E A +A+ EL N GK+ + SQ L++GNI K WT E +K+ +
Sbjct: 255 KGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKL 314
Query: 301 ADVG-PGVISIELLKDLQSSGRNRGFAFIEYYNHACA--EYSRQKMSNSNFKLENNAPTV 357
G V I L++D G NRGFAF+E+ + + A + R + + F ++ A V
Sbjct: 315 KHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPA-KV 373
Query: 358 SWAEP-RNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR 416
S+A+ + +SQVK V++ LP + +D ++ L + +G++ K+ L +
Sbjct: 374 SFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKD 433
Query: 417 FGFVHFSDRSSAMK---ALKNTEKYEIDGK-NLECSLAKP 452
+GFV F +A++ ++ TE E D K + L++P
Sbjct: 434 YGFVTFGSHDAAIRCADSITGTELGEGDKKAKVRARLSRP 473
>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:30979896-30974591 | 20130731
Length = 782
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 127/239 (53%), Gaps = 13/239 (5%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
EV++GG+ +E DLR VGE++EVR+ ++ KG+A + F+T E +A+ E
Sbjct: 195 EVFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAE 254
Query: 261 LNNSEFKGKK--IKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVG-PGVISIELLKDLQ 317
L N GK+ I ++ Q L++ NI K W E +K+ + G + LL+D
Sbjct: 255 LKNPVINGKQCGITITTCQDSDTLYLDNICKSWKKEALKEKLKHYGVESFKDLTLLEDDN 314
Query: 318 SSGRNRGFAFIEYYNHACAE--YSRQKMSNSNFKLENNAPTVSWAEPRNS----ESSAVS 371
+ G N G AF+E+ +H+ ++ Y R + ++ F ++ A VS+A NS ++
Sbjct: 315 NEGTNCGCAFLEFSSHSDSKDAYKRLQKTDVVFGVDKPA-EVSFA---NSFIDLGDDIMA 370
Query: 372 QVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMK 430
QVK V++ LP + +D ++ L + +G + KV L G + +GFV F ++A++
Sbjct: 371 QVKTVFIDLLPPSWDEDYVRALLKKYGAVEKVELAKNMPGARRKNYGFVTFGTHAAAVE 429
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 126/269 (46%), Gaps = 18/269 (6%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
++ +Y+G + NV++ L VG+V VR+ + + GY +V F + A++A+
Sbjct: 31 TTSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARAL 90
Query: 259 EELNNSEFKGKKIKC--------SSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 310
+ LN + K I+ S +FI N+ K + + + G ++S
Sbjct: 91 DVLNFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQ-IMSC 149
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAV 370
++ D SG+++G+ F+++ A+ + K+ N L N+ R + V
Sbjct: 150 KIATD--GSGQSKGYGFVQFEAEDSAQNAIDKL---NGMLINDKQVFVGHFLRKQDRDNV 204
Query: 371 ---SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSS 427
++ VYVKNL E+ T+D LK F +G IT VL G+ K FGFV+F +
Sbjct: 205 LSKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKC-FGFVNFENAED 263
Query: 428 AMKALKNTEKYEIDGKNLECSLAKPEADQ 456
A KA++ ++D K A+ ++++
Sbjct: 264 AAKAVEALNGKKVDDKEWYVGKAQKKSER 292
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 131/287 (45%), Gaps = 34/287 (11%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
++ ++I + + + L S G++ +I SG+ KGY FV F+ ++ A AI
Sbjct: 119 TANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIA-TDGSGQSKGYGFVQFEAEDSAQNAI 177
Query: 259 EELNNSEFKGKKI------------KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPG 306
++LN K++ S + +++ N+ + +T +D+K G
Sbjct: 178 DKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNVYVKNLSESFTEDDLKNEFGAYGT- 236
Query: 307 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNS- 365
+ S L++D + GR++ F F+ + N A + + ++ K+++ V A+ ++
Sbjct: 237 ITSAVLMRD--ADGRSKCFGFVNFENAEDAAKAVEALNGK--KVDDKEWYVGKAQKKSER 292
Query: 366 ------------ESSAVSQVKAV--YVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSG 411
+ S V + + + Y+KNL ++IT + LK++F G IT + +G
Sbjct: 293 EQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKEMFSEFGTITSYKIMRDPNG 352
Query: 412 QEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRS 458
+ GFV FS A +AL I K L ++A+ + D+R+
Sbjct: 353 VSRGS-GFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRA 398
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 116/235 (49%), Gaps = 18/235 (7%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
++ +Y+G + ++V++ L +G+V VRI + S + GY +V F A++A+
Sbjct: 23 TTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAM 82
Query: 259 EELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 310
+ LN + K I+ S +FI N+ + + + + G ++S
Sbjct: 83 DVLNFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFG-NILSC 141
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPT-VSWAEPRNSESSA 369
++ D +SG ++G+ F+++ N A+ + K+ N L N+ P V + + +A
Sbjct: 142 KIAMD--ASGLSKGYGFVQFENEESAQSAIDKL---NGMLLNDKPVYVGHFQRKQDRDNA 196
Query: 370 VSQVK--AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHF 422
+S K VYVKNL E++T D LK F +G IT V+ G+ K FGFV+F
Sbjct: 197 LSNAKFNNVYVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKC-FGFVNF 250
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/274 (25%), Positives = 113/274 (41%), Gaps = 43/274 (15%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKH------------RLFI 284
SG KGY FV F+ +E A AI++LN K + Q K +++
Sbjct: 148 SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNVYV 207
Query: 285 GNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMS 344
N+ + T +D+K + G + S +++D+ G+++ F F+ + N A + + ++
Sbjct: 208 KNLSESVTDDDLKNTFGEYGT-ITSAVVMRDV--DGKSKCFGFVNFENADAAAEAVEALN 264
Query: 345 NSNF------------KLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKK 392
F K E E E+ +Y+KNL +++T + L +
Sbjct: 265 GKKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSE 324
Query: 393 LFEHHGKIT--KVVLPPAKSGQEKSRF-GFVHFSDRSSAMKALKNTEKYEIDGKNLECSL 449
LF G +T K++ P Q SR GFV FS A +AL + GK L +
Sbjct: 325 LFSEFGTVTSCKILRDP----QGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAP 380
Query: 450 A--KPEADQRSSGTSNSQKPVV-------LPTYP 474
A K E R + +PV LP YP
Sbjct: 381 AQKKEERKARLQAQFSQVRPVTMAPIAPRLPFYP 414
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 138/302 (45%), Gaps = 39/302 (12%)
Query: 194 ALPPHSSE-----VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAF 248
A+PP SS ++IG + + E L GEV V++++ K++ + +GY F+ F
Sbjct: 63 AVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEF 122
Query: 249 KTKELASQAIEELNNS-------EFKGKKIKCSSSQAKH------RLFIGNIPKKWTVED 295
++ A + ++ N + F+ SS + +H +F+G++ +
Sbjct: 123 ISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHH 182
Query: 296 MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSN---------- 345
+ +V V +++ D +++GR +G+ F+ + + + + +M
Sbjct: 183 LTEVFRTRYNSVKGAKVVID-RTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRI 241
Query: 346 ---SNFKLENNAPTVSWAEPR-NSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKIT 401
SN L S+ P+ +++ ++V NL N+T + LK++F +G++
Sbjct: 242 GPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELV 301
Query: 402 KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQRSSGT 461
V +P K R GFV F+DRSSA +AL+ + G+N+ S + A++++
Sbjct: 302 HVKIPSGK------RCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQD 355
Query: 462 SN 463
N
Sbjct: 356 PN 357
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 129/269 (47%), Gaps = 18/269 (6%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
++ +Y+G + NV++ L +G+V VR+ + + GY +V + + A++A+
Sbjct: 33 TTSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARAL 92
Query: 259 EELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVADVGPGVISI 310
+ LN + + I+ S + +FI N+ K + + + G ++S
Sbjct: 93 DVLNFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFG-NILSC 151
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNS--NFKLENNAPTVSWAEPRNSESS 368
++ D SG+++G+ F+++ A+ + +K++ N K P + E ++
Sbjct: 152 KVAVD--GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDR 209
Query: 369 AVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-FGFVHFSDRSS 427
A + V+VKNL E+ T D LKK F G IT V+ + G KS+ FGFV+F
Sbjct: 210 A--KFNNVFVKNLSESTTDDELKKTFGEFGTITSAVV--MRDGDGKSKCFGFVNFESTDD 265
Query: 428 AMKALKNTEKYEIDGKNLECSLAKPEADQ 456
A +A++ +ID K A+ ++++
Sbjct: 266 AARAVEALNGKKIDDKEWYVGKAQKKSER 294
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 129/265 (48%), Gaps = 38/265 (14%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKI-----------KCSSSQAK-HRLFI 284
SG+ KGY FV F T+E A +AIE+LN K++ + + +AK + +F+
Sbjct: 158 SGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNVFV 217
Query: 285 GNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMS 344
N+ + T +++KK + G + S +++D G+++ F F+ + + + +R +
Sbjct: 218 KNLSESTTDDELKKTFGEFGT-ITSAVVMRD--GDGKSKCFGFVNF--ESTDDAARAVEA 272
Query: 345 NSNFKLENNAPTVSWAEPRNS--------------ESSAVSQVKAVYVKNLPENITQDSL 390
+ K+++ V A+ ++ E++ Q +YVKNL ++I + L
Sbjct: 273 LNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKL 332
Query: 391 KKLFEHHGKIT--KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECS 448
K+LF +G IT KV+ P +G + GFV FS A +AL + K L +
Sbjct: 333 KELFSSYGTITSCKVMRDP--NGVSRGS-GFVAFSTPEEASRALLEMNGKMVASKPLYVT 389
Query: 449 LAKPEADQRSSGTSN--SQKPVVLP 471
LA+ + D+R+ + +PV +P
Sbjct: 390 LAQRKEDRRARLQAQFAQMRPVSMP 414
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 133/308 (43%), Gaps = 50/308 (16%)
Query: 188 KHAELLALPPHSSEV---YIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYA 244
+ A+ P + EV +IG + + E L + GE++ V++++ K++ + +GY
Sbjct: 45 QSAQPPQQPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYG 104
Query: 245 FVAFKTKELASQAIE--------------ELNNSEFK-GKKIKCSSSQAKHRLFIGNIPK 289
F+ F T+ A + ++ LN + F G++ H +F+G++
Sbjct: 105 FIEFNTRATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAA 164
Query: 290 KWT----VEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKM-- 343
T E + V + I+ L +GR++G+ F+ + + + +M
Sbjct: 165 DVTDYLLQETFRARYNSVKGAKVVIDRL-----TGRSKGYGFVRFADEGEQMRAMTEMQG 219
Query: 344 -------------SNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSL 390
+N N P S+ P +S ++V NL N+T D L
Sbjct: 220 VLCSTRPMRIGPATNKN-PAATTQPKASY-NPSGGQSENDPNNTTIFVGNLDPNVTDDHL 277
Query: 391 KKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLA 450
+++F +G++ V +P K R GFV FSDRS A +A++ + G+N+ S
Sbjct: 278 RQVFTQYGELVHVKIPSGK------RCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWG 331
Query: 451 KPEADQRS 458
+ +++++
Sbjct: 332 RTPSNKQT 339
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 73.9 bits (180), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 23/272 (8%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+S +Y+G + NV++ L + V VR+ + + + GY +V + A+ A+
Sbjct: 24 NSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAM 83
Query: 259 EELNNSEFKGKKIKCSSSQAKHR-----------LFIGNIPKKWTVEDMKKVVADVGPGV 307
E LN GK I+ S HR LFI N+ + + + + G V
Sbjct: 84 ENLNYVPLNGKPIRIMFS---HRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFG-NV 139
Query: 308 ISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSES 367
+S ++ D S+G ++G F+++ N A+ + +K+ L N+ R E
Sbjct: 140 LSCKVAMD--SNGHSKGHGFVQFDNDQSAKNAIEKLDG---MLMNDKKVYVGYFVRCQER 194
Query: 368 SAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSS 427
S+ + VYVKNL E+ T + LK+LF G IT V++ +G K FGFV+F S
Sbjct: 195 SS-PKFTNVYVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKC-FGFVNFQSSDS 252
Query: 428 AMKALKNTEKYEI-DGKNLECSLAKPEADQRS 458
A A++ DGK L A+ ++++ +
Sbjct: 253 AATAVEKLNGSTTNDGKVLFVGRAQKKSEREA 284
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 112/243 (46%), Gaps = 25/243 (10%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKI------KCS--SSQAKHRLFIGNIP 288
+G KG+ FV F + A AIE+L+ KK+ +C SS +++ N+
Sbjct: 149 NGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVRCQERSSPKFTNVYVKNLS 208
Query: 289 KKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNF 348
+ +T ED+K++ G + S+ ++K +G ++ F F+ + + A + +K++ S
Sbjct: 209 ESYTYEDLKQLFNSFGV-ITSVLIMK--YDNGNSKCFGFVNFQSSDSAATAVEKLNGSTT 265
Query: 349 -------------KLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFE 395
K E A ++ E + Q +Y+KN+ +++ ++ LK+LF
Sbjct: 266 NDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKELFS 325
Query: 396 HHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEAD 455
G IT + G+ K GFV F+ A KA+ I K + S+A+ + +
Sbjct: 326 EFGTITSCKVMSDARGRSKG-VGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKEE 384
Query: 456 QRS 458
+++
Sbjct: 385 RKA 387
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 120/278 (43%), Gaps = 27/278 (9%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
V++ +A ++ L + G + +++ + E G+ KGY FV F+T+E A+ AIE L
Sbjct: 100 VFVKNLAESIDNSGLEDMFKKFGNILSSKVVMS-EDGKSKGYGFVQFETEESANAAIERL 158
Query: 262 NNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGP-----------GVISI 310
N K+I K ++T MK + D+ +IS+
Sbjct: 159 NGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISL 218
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSN------------SNFKLENNAPTVS 358
+ KD S+G ++GF F+ + N A+ + + M+ + K E
Sbjct: 219 AVAKD--SNGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQ 276
Query: 359 WAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFG 418
E + E + +YVKN+ +N++ + L+ F G IT + G K FG
Sbjct: 277 QFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMRDDKGISKG-FG 335
Query: 419 FVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 456
FV FS A KA+ + + GK L SLA+ + D+
Sbjct: 336 FVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKEDR 373
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 133/278 (47%), Gaps = 22/278 (7%)
Query: 193 LALPPHSS--EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKT 250
+A+PP ++ +Y+G + ++S+ L ++ VRI + SG+ Y +V F +
Sbjct: 1 MAVPPSATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLS 60
Query: 251 KELASQAIEELNNSEFKGKKIKCSSSQAK---HRLFIGNIPKK--------WTVEDMKKV 299
A +AIE N+S GK I+ S+ + IGN+ K +EDM K
Sbjct: 61 PHDAIRAIEVKNHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKK 120
Query: 300 VADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSW 359
+ ++S +++ + G+++G+ F+++ A + +++ N + +
Sbjct: 121 FGN----ILSSKVV--MSEDGKSKGYGFVQFETEESANAAIERL-NGYLVGDKQIYVGKF 173
Query: 360 AEPRNSESSAV-SQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFG 418
+ + SS ++ +Y+KNL +I++ L++ F GKI + + +G K FG
Sbjct: 174 VKKSDRISSGPDTRYTNLYMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKG-FG 232
Query: 419 FVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 456
FV+F + A +A++ ++ K L + A+ +A++
Sbjct: 233 FVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAER 270
Score = 50.4 bits (119), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 181 NDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGER 240
+ + E+K+ ++L S +Y+ I +NVS+E LR G ++ +IM+ + G
Sbjct: 275 HQQFEEKRKEQVLKY--KGSNIYVKNIDDNVSDEGLRDHFSVCGTITSAKIMR-DDKGIS 331
Query: 241 KGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAK 279
KG+ FV F T E A++A+ + F GK + S +Q K
Sbjct: 332 KGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRK 370
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 129/282 (45%), Gaps = 21/282 (7%)
Query: 190 AELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFK 249
A L P ++ +Y+G + +V+E L V +V +R+ + + GYA+V F
Sbjct: 20 AALTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFT 79
Query: 250 TKELASQAIEELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVA 301
+ A+ A E LN + K I+ SQ +FI N+ + + A
Sbjct: 80 NAQDAANAKELLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFA 139
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
GP V+S ++ L +G+++G+ F+++ N A+ + +++ L N+
Sbjct: 140 AFGP-VLSCKVA--LDGNGQSKGYGFVQFDNEEAAKSAIKQLDG---MLINDKQVYVGFF 193
Query: 362 PRNSE---SSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-F 417
R+ E ++ + VYVKN+ E T + LK+LF G IT + K KSR F
Sbjct: 194 VRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATV--MKDANGKSRCF 251
Query: 418 GFVHFSDRSSAMKALKNTEKYEI-DGKNLECSLAKPEADQRS 458
GFV+F SA A++ I D K L A+ +A++ +
Sbjct: 252 GFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAEREN 293
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 36/233 (15%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKI------------KCSSSQAKHRLFI 284
+G+ KGY FV F +E A AI++L+ K++ + + S +++
Sbjct: 154 NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYV 213
Query: 285 GNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMS 344
NI + T ED+K++ G + S ++KD ++G++R F F+ + + A + +K++
Sbjct: 214 KNISEASTDEDLKQLFGPFGM-ITSATVMKD--ANGKSRCFGFVNFQSPDSAAAAVEKLN 270
Query: 345 NSNFKLEN--------------NAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSL 390
+ + N + + R S + Q +Y+KNL ++ ++ L
Sbjct: 271 GTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKL-QGANLYLKNLDDDFNEEKL 329
Query: 391 KKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGK 443
K LF G +T + G K GFV FS A KAL E++GK
Sbjct: 330 KDLFSEFGTVTSCRVMLDSHGHSKGS-GFVAFSTPEEANKALN-----EMNGK 376
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 75/282 (26%), Positives = 129/282 (45%), Gaps = 21/282 (7%)
Query: 190 AELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFK 249
A L P ++ +Y+G + +V+E L V +V +R+ + + GYA+V F
Sbjct: 20 AALTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFT 79
Query: 250 TKELASQAIEELNNSEFKGKKIKCSSSQ--------AKHRLFIGNIPKKWTVEDMKKVVA 301
+ A+ A E LN + K I+ SQ +FI N+ + + A
Sbjct: 80 NAQDAANAKELLNFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFA 139
Query: 302 DVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAE 361
GP V+S ++ L +G+++G+ F+++ N A+ + +++ L N+
Sbjct: 140 AFGP-VLSCKVA--LDGNGQSKGYGFVQFDNEEAAKSAIKQLDG---MLINDKQVYVGFF 193
Query: 362 PRNSE---SSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSR-F 417
R+ E ++ + VYVKN+ E T + LK+LF G IT + K KSR F
Sbjct: 194 VRHQERARTNGSPKFTNVYVKNISEASTDEDLKQLFGPFGMITSATV--MKDANGKSRCF 251
Query: 418 GFVHFSDRSSAMKALKNTEKYEI-DGKNLECSLAKPEADQRS 458
GFV+F SA A++ I D K L A+ +A++ +
Sbjct: 252 GFVNFQSPDSAAAAVEKLNGTAINDDKVLFVGRAQRKAEREN 293
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 36/233 (15%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKI------------KCSSSQAKHRLFI 284
+G+ KGY FV F +E A AI++L+ K++ + + S +++
Sbjct: 154 NGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNVYV 213
Query: 285 GNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMS 344
NI + T ED+K++ G + S ++KD ++G++R F F+ + + A + +K++
Sbjct: 214 KNISEASTDEDLKQLFGPFGM-ITSATVMKD--ANGKSRCFGFVNFQSPDSAAAAVEKLN 270
Query: 345 NSNFKLEN--------------NAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSL 390
+ + N + + R S + Q +Y+KNL ++ ++ L
Sbjct: 271 GTAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKL-QGANLYLKNLDDDFNEEKL 329
Query: 391 KKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGK 443
K LF G +T + G K GFV FS A KAL E++GK
Sbjct: 330 KDLFSEFGTVTSCRVMLDSHGHSKGS-GFVAFSTPEEANKALN-----EMNGK 376
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 127/279 (45%), Gaps = 40/279 (14%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE-- 259
++IG + + + E L S GE++ V++++ K SG +GY F F + A + ++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 260 ------------ELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGV 307
LN + F K S + +F+G++ T + + + P V
Sbjct: 159 AGILMPNADQAFRLNWATFS-TGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSV 217
Query: 308 ISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPT-VSWAEPR--- 363
+ +++ D ++GR++G+ F+ + + + E S Q M+ N ++ P + A PR
Sbjct: 218 KAAKVVYDA-NTGRSKGYGFVRFGDES--ERS-QAMTQMNGVYCSSRPMRIGAATPRKSS 273
Query: 364 -----------NSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQ 412
+S+S A S ++V L N+T + LK+ F +G+I V +P K
Sbjct: 274 GHQPGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIPVGKG-- 331
Query: 413 EKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 451
GFV F++R++A +AL+ I + + S +
Sbjct: 332 ----CGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGR 366
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 88/182 (48%), Gaps = 9/182 (4%)
Query: 276 SQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFI-----EY 330
S A +L++GNIP+ + ++++K+V + G V E++ D + S R+R FAF+ E
Sbjct: 56 SPALRKLYVGNIPRTVSNDELEKIVQEHG-AVEKAEVMYD-KYSKRSRRFAFVTMKTVED 113
Query: 331 YNHACAEYSRQKMSNSNFKLE-NNAPTVSWAEP-RNSESSAVSQVKAVYVKNLPENITQD 388
N A + + ++ K+ P + P + ES+ V VYV NL +N+T D
Sbjct: 114 ANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSD 173
Query: 389 SLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECS 448
SLKK F G + A + S FGFV FS A+ + ++G+ + +
Sbjct: 174 SLKKFFSEKGNALSAKVSRAPGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRVN 233
Query: 449 LA 450
A
Sbjct: 234 KA 235
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 77/153 (50%), Gaps = 21/153 (13%)
Query: 197 PHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQ 256
P ++Y+G I VS ++L Q G V + +M K S + +AFV KT E A+
Sbjct: 57 PALRKLYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANA 116
Query: 257 AIEELNNSEFKGKKIKCSSSQ-------------------AKHRLFIGNIPKKWTVEDMK 297
A E+LN +E G++IK + ++ + +++++GN+ K T + +K
Sbjct: 117 AAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYKVYVGNLAKNVTSDSLK 176
Query: 298 KVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
K ++ G +S ++ + +S ++ GF F+ +
Sbjct: 177 KFFSEKG-NALSAKVSRAPGTS-KSSGFGFVTF 207
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 64.3 bits (155), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 64/311 (20%), Positives = 135/311 (43%), Gaps = 40/311 (12%)
Query: 175 MRFNHTNDEVEKKKHAELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKA 234
M ++H V H A + +++G + + + E L S GE+ +++++
Sbjct: 71 MAYHHYLHHVPHVHHGSSAA---DNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRN 127
Query: 235 KESGERKGYAFVAFKTKELASQAIE--------------ELNNSEFKGKKIKCSSSQAKH 280
K++ + +GY FV F + A + ++ LN + F K S +
Sbjct: 128 KQTCQTEGYGFVEFTSHGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDL 187
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+F+G++ T + + +D P V + +++ D ++GR++G+ F+ + + +
Sbjct: 188 SIFVGDLAADVTDTMLLETFSDKYPSVKAAKVVFDA-NTGRSKGYGFVRFGDDGERSKAL 246
Query: 341 QKMSNSNFKLENNAPTVSWAEPRN--------------SESSAVSQVKAVYVKNLPENIT 386
+M N F + A + A PR S+S S ++V L + T
Sbjct: 247 NEM-NGVF-CSSRAMRIGAATPRKSSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSAT 304
Query: 387 QDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLE 446
+ L++ F +G+I V +P K GFV F++R++A +AL+ + + +
Sbjct: 305 AEDLRQPFSQYGEIVSVKIPVGKG------CGFVQFANRNNAEEALQKLNGTTVGKQTVR 358
Query: 447 CSLAKPEADQR 457
S + A+++
Sbjct: 359 LSWGRNPANKQ 369
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 85/155 (54%), Gaps = 23/155 (14%)
Query: 194 ALPPHS-----SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAF 248
A P HS +++++G + +EED+R + G V EV ++K +++G+ +G F+ +
Sbjct: 77 ASPDHSDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKY 136
Query: 249 KTKELASQAIEELNNSEF-------------KGKKIKCSSSQAKHRLFIGNIPKKWTVED 295
T E A QAI L+N G++ + + +++LF+G++ K+ +V++
Sbjct: 137 ATSEEADQAIRALHNRHTLPGGVGPIQVRYADGERERLGA--VEYKLFVGSLNKQASVKE 194
Query: 296 MKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
+++V + G + + L++D Q ++RG F++Y
Sbjct: 195 VEEVFSKYG-RIEDVYLMRDDQK--QSRGCGFVKY 226
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 62.0 bits (149), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 50/83 (60%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
S+++Y+GGI+ + + LR G+V + R++ +E G KG+ FV F T E AS A+
Sbjct: 39 SAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAAL 98
Query: 259 EELNNSEFKGKKIKCSSSQAKHR 281
+ ++N E G+ ++ + +Q + R
Sbjct: 99 QAMDNQELHGRTVRVNYAQERPR 121
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 61.6 bits (148), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 92/183 (50%), Gaps = 16/183 (8%)
Query: 198 HSSE------VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTK 251
HS+E Y+G + +SEE L G V V + K + + + +GY FV F+++
Sbjct: 17 HSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSE 76
Query: 252 ELASQAIEELNNSEFKGKKIKCS-SSQAKH------RLFIGNIPKKWTVEDMKKVVADVG 304
E A AI+ LN + GK I+ + +SQ K LFIGN+ + + + G
Sbjct: 77 EDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFG 136
Query: 305 PGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRN 364
V + ++++D +G +RGF FI Y + ++ + + M N + L N TVS+A ++
Sbjct: 137 VIVTNPKIMRD-PDTGNSRGFGFISYDSFEASDSAIEAM-NGQY-LCNRQITVSYAYKKD 193
Query: 365 SES 367
++
Sbjct: 194 TKG 196
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/279 (22%), Positives = 127/279 (45%), Gaps = 19/279 (6%)
Query: 190 AELLALPPH-SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAF 248
+E A+P ++ +Y+G + ++V++ L + R+ K +G+ Y +V
Sbjct: 4 SEKDAVPASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNL 63
Query: 249 KTKELASQAIEELNNSEFKGKKIKC--------SSSQAKHRLFIGNIPKKWTVEDMKKVV 300
+ + A +AIE N+S GK I+ + K +F+ N+ + +
Sbjct: 64 SSHQEAIRAIELKNHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLF 123
Query: 301 ADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWA 360
G ++S ++ + G+++GF +I++ + A + QKM+ S + +
Sbjct: 124 QKYG-NILSSKIAR--SEDGKSKGFGYIQFDSEESANVAIQKMNGSTVR---DKQIYVGK 177
Query: 361 EPRNSESS---AVSQVKAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRF 417
R SE S ++ +YVKNL +T+ L + F GKI + + ++GQ K F
Sbjct: 178 FIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKG-F 236
Query: 418 GFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQ 456
GFV++ A +A++ + + K L + A+ + ++
Sbjct: 237 GFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVER 275
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 124/277 (44%), Gaps = 27/277 (9%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
V++ +A ++ L Q G + +I ++ E G+ KG+ ++ F ++E A+ AI+++
Sbjct: 105 VFVKNLAASIDNVGLHDLFQKYGNILSSKIARS-EDGKSKGFGYIQFDSEESANVAIQKM 163
Query: 262 NNSEFKGKKIKCSSSQAKHRLFIGNIPKKWT---VEDMKKVVADVGPG--------VISI 310
N S + K+I K + ++ K+T V+++ VV + G ++S+
Sbjct: 164 NGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNLYVKNLDPVVTEKHLGEKFSSFGKIVSL 223
Query: 311 ELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAV 370
+ KD +G+++GF F+ Y + A + + M S F + V+ A+ + +
Sbjct: 224 AIKKD--ENGQSKGFGFVNYDSPDDARRAMEAMDGSQFG--SKILYVARAQKKVEREQIL 279
Query: 371 SQV----------KAVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFV 420
+ +YVKN+ ++ + L+ F G++ + G K FGFV
Sbjct: 280 HHLFVEKGLKHMGSNIYVKNIDTSVGDEELRDHFSACGEVLSAKVMRDDKGTSKG-FGFV 338
Query: 421 HFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEADQR 457
FS A K++ GK L A+ + D++
Sbjct: 339 CFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKKEDRK 375
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 28/246 (11%)
Query: 237 SGERKGYAFVAFKTKELASQAIEELNNSEFKGKKI----------KCSSSQAK-HRLFIG 285
+G+ GY FV + E A AIE+L+ K KK + + K +++
Sbjct: 51 NGKSLGYGFVQYDNHESAKCAIEKLDGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVK 110
Query: 286 NIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSN 345
N+ + T ED+KK+ + G + S ++KD +G ++ F F+ + + A + +K++
Sbjct: 111 NLLETDTDEDLKKLFSTYGV-ITSAVIMKD--ENGNSKCFGFVNFQSPDSAAAAVEKLNG 167
Query: 346 S-------------NFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKK 392
+ K E A + E + Q +Y+KNL E+I + LK+
Sbjct: 168 TTTNDGKVLYVGRAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKE 227
Query: 393 LFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKP 452
+F G IT + G K FGFV FS A KA+ I K L +A+
Sbjct: 228 MFSEFGTITSCKVMFDAHGHSKG-FGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVAQR 286
Query: 453 EADQRS 458
+ D+++
Sbjct: 287 KEDRKT 292
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 316 LQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWAEPRNSESSAVS-QVK 374
L S+G++ G+ F++Y NH A+ + +K+ +++ V + R S S +
Sbjct: 48 LDSNGKSLGYGFVQYDNHESAKCAIEKLDG--MLIKDKKAFVGYFIRRQERSENGSPKFT 105
Query: 375 AVYVKNLPENITQDSLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKN 434
VYVKNL E T + LKKLF +G IT V+ ++G K FGFV+F SA A++
Sbjct: 106 NVYVKNLLETDTDEDLKKLFSTYGVITSAVIMKDENGNSKC-FGFVNFQSPDSAAAAVEK 164
Query: 435 TEKYEI-DGKNLECSLAKPEADQRS 458
DGK L A+ + ++ +
Sbjct: 165 LNGTTTNDGKVLYVGRAQRKCEREA 189
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 60.5 bits (145), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 80/146 (54%), Gaps = 16/146 (10%)
Query: 197 PHSSE------VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKT 250
PHS + ++IGG+A + + E+ + + GE+++ IMK + +G +G+ F+ +
Sbjct: 9 PHSGDGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYAD 68
Query: 251 KELASQAIEE---LNNSEFKGKK-IKCSSSQAK----HRLFIGNIPKKWTVEDMKKVVAD 302
+ Q I+E +N+ + + K+ I +SQ ++F+G IP + +++K +
Sbjct: 69 ASVVDQVIQENHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSK 128
Query: 303 VGPGVISIELLKDLQSSGRNRGFAFI 328
G V+ E+++D ++ R+RGF F+
Sbjct: 129 HGN-VVEHEIIRD-HTTKRSRGFGFV 152
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 80/173 (46%), Gaps = 6/173 (3%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
++FIG + K T+E+ K G S+ ++KD + +GR RGF FI Y + + +
Sbjct: 19 KIFIGGLAKDTTLEEFVKYFERYGEITDSV-IMKD-RHTGRPRGFGFITYADASVVD--- 73
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKI 400
++ N + + + P+ + + + K ++V +P +++D LK F HG +
Sbjct: 74 -QVIQENHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNV 132
Query: 401 TKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPE 453
+ + + + FGFV F + L + ++D +E A+P+
Sbjct: 133 VEHEIIRDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEIKKAEPK 185
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 59.3 bits (142), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 51/84 (60%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+++++IGG++ + E LR GEV + RI+ +E+G +G+ F+ F + E AS AI
Sbjct: 41 TTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAI 100
Query: 259 EELNNSEFKGKKIKCSSSQAKHRL 282
+ L+ + G++++ + + + R+
Sbjct: 101 QALDGQDLHGRRVRVNYANERPRV 124
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 89/176 (50%), Gaps = 9/176 (5%)
Query: 279 KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 338
+ +L+ GN+P + ++ + G + IE+L D + +G++RGFAF+ +C E
Sbjct: 112 RTKLYFGNLPYSVDSALLAGLIEEYGSAEL-IEVLYD-RDTGKSRGFAFV---TMSCVED 166
Query: 339 SRQKMSNSNFK-LENNAPTVSWAE-PRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEH 396
+ N + K V++++ P+ E ++V NL +T +SL + F+
Sbjct: 167 CNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQE 226
Query: 397 HGKITKV-VLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 451
HG + VL ++G+ + +GFV ++ +S AL + E++G+ L SLA+
Sbjct: 227 HGTVVGARVLFDGETGKSRG-YGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQ 281
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 190 AELLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFK 249
E +A +++Y G + +V L + G + ++ +++G+ +G+AFV
Sbjct: 103 GETVAEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMS 162
Query: 250 TKELASQAIEELNNSEFKGKKIKCSSS-----------QAKHRLFIGNIPKKWTVEDMKK 298
E + I+ L+ EF G+ ++ + S + +++LF+GN+ T E + +
Sbjct: 163 CVEDCNAVIQNLDGKEFMGRTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQ 222
Query: 299 VVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVS 358
+ G V+ +L D + +G++RG+ F+ Y + + + M N +LE VS
Sbjct: 223 AFQEHGT-VVGARVLFDGE-TGKSRGYGFVSYATKSEMDTALAIM--DNVELEGRTLRVS 278
Query: 359 WAEPRNS 365
A+ + S
Sbjct: 279 LAQGKRS 285
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 127/298 (42%), Gaps = 53/298 (17%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
++IG + V E L GEV ++I++ K +G+ +GY F+ F + A + ++
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 262 NNSEFKGK----KIKCSS---------SQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVI 308
N ++ G ++ +S + H +F+G++ T +++ V
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVR 136
Query: 309 SIELLKDLQSSGRNRGFAFIEY-----YNHACAEYSRQKMSNSNFKLENNAPTVSWAEPR 363
+++ D ++GR++G+ F+++ N A +E + S ++ P + +
Sbjct: 137 GAKVVTD-PNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQ 195
Query: 364 NSE--------------------SSAVSQV--------KAVYVKNLPENITQDSLKKLFE 395
N ++ V+ V +YV NL N++++ LK+ F
Sbjct: 196 NPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNFL 255
Query: 396 HHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPE 453
G+I V + P K+ GFV F R+SA +A++ + + + + S +P+
Sbjct: 256 QFGEIVSVKVHPGKA------CGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQ 307
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/303 (18%), Positives = 123/303 (40%), Gaps = 56/303 (18%)
Query: 196 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 255
P +++G + + + E L GEV+ ++++ K++G+ +GY FV F T+ +A
Sbjct: 112 PEEIRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAE 171
Query: 256 QAIEELNNSEF------------------KGKKIKCSSSQAKHRLFIGNIPKKWTVEDMK 297
+ ++ N + G + + S + + +F+G++ T ++
Sbjct: 172 KVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQ 231
Query: 298 KVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR----------------- 340
+ A + +++ D ++GR++G+ F+ + + +E +R
Sbjct: 232 ETFASKFSSIKGAKVVID-SNTGRSKGYGFVRFGDE--SERTRAMTEMNGVYCSSRPMRV 288
Query: 341 ------------QKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQD 388
Q+ S+ L + A + S+S S ++V L +I+ +
Sbjct: 289 GVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDE 348
Query: 389 SLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECS 448
L++ F G + V +P K GFV +DR +A +A++ I + + S
Sbjct: 349 DLRQPFLQFGDVISVKIPVGKG------CGFVQLADRKNAEEAIQGLNGTVIGKQTVRLS 402
Query: 449 LAK 451
+
Sbjct: 403 WGR 405
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
S +++IGGI+ + +EE LR + + GEV E IMK + +G +G+ FV F +A +
Sbjct: 5 SGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVV 64
Query: 259 EELNNSEFK---GKK----------------IKCSSSQAKHR-LFIGNIPKKWTVEDMKK 298
+E +N + + KK I S + R +F+G + T D KK
Sbjct: 65 QEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
Query: 299 VVADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
G + + ++ D + R RGF FI Y
Sbjct: 125 YFDQFGT-ITDVVVMYDHNTQ-RPRGFGFITY 154
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E +++ + G V ++KD +++GR RGF F+ + + A A+
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGE-VKEAVIMKD-RTTGRARGFGFVVFIDPAVADIVV 64
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSE------------SSAVSQVKAVYVKNLPENITQD 388
Q+ N + ++ V PR+ + S + + ++V L +T+
Sbjct: 65 QEKHNIDGRMVEAKKAV----PRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTES 120
Query: 389 SLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECS 448
KK F+ G IT VV+ + Q FGF+ + + + L T +E++GK +E
Sbjct: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKT-FHELNGKMVEVK 179
Query: 449 LAKPE 453
A P+
Sbjct: 180 RAVPK 184
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 22/152 (14%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
S +++IGGI+ + +EE LR + + GEV E IMK + +G +G+ FV F +A +
Sbjct: 5 SGKLFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVV 64
Query: 259 EELNNSEFK---GKK----------------IKCSSSQAKHR-LFIGNIPKKWTVEDMKK 298
+E +N + + KK I S + R +F+G + T D KK
Sbjct: 65 QEKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKK 124
Query: 299 VVADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
G + + ++ D + R RGF FI Y
Sbjct: 125 YFDQFGT-ITDVVVMYDHNTQ-RPRGFGFITY 154
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 19/185 (10%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E +++ + G V ++KD +++GR RGF F+ + + A A+
Sbjct: 7 KLFIGGISWDTNEERLREYFSTYGE-VKEAVIMKD-RTTGRARGFGFVVFIDPAVADIVV 64
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSE------------SSAVSQVKAVYVKNLPENITQD 388
Q+ N + ++ V PR+ + S + + ++V L +T+
Sbjct: 65 QEKHNIDGRMVEAKKAV----PRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTES 120
Query: 389 SLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECS 448
KK F+ G IT VV+ + Q FGF+ + + + L T +E++GK +E
Sbjct: 121 DFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKT-FHELNGKMVEVK 179
Query: 449 LAKPE 453
A P+
Sbjct: 180 RAVPK 184
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E +K+ A G VI +++D +++GR RGF F+ + + A AE
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGE-VIEAVIMRD-RATGRARGFGFVVFSDPAVAE--- 61
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSE------------SSAVSQVKAVYVKNLPENITQD 388
++ ++ A PR+ + S + K ++V LP IT+
Sbjct: 62 -RVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 389 SLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECS 448
K F+ G IT VV+ + Q FGF+ + + + L T +E++GK +E
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKT-FHELNGKMVEVK 179
Query: 449 LAKPE 453
A P+
Sbjct: 180 RAVPK 184
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI- 258
+++IGGI+ + EE L+ + + GEV E IM+ + +G +G+ FV F +A + I
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVII 65
Query: 259 ------------------EELNNSEFKGKKIKCSSSQAK-HRLFIGNIPKKWTVEDMKKV 299
++ N + ++ S + ++F+G +P T D K
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 300 VADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
G + + ++ D + R RGF FI Y
Sbjct: 126 FDQFGT-ITDVVVMYDHNTQ-RPRGFGFITY 154
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 19/185 (10%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LFIG I E +K+ A G VI +++D +++GR RGF F+ + + A AE
Sbjct: 7 KLFIGGISWDTDEERLKEYFATYGE-VIEAVIMRD-RATGRARGFGFVVFSDPAVAE--- 61
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSE------------SSAVSQVKAVYVKNLPENITQD 388
++ ++ A PR+ + S + K ++V LP IT+
Sbjct: 62 -RVIIDKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITES 120
Query: 389 SLKKLFEHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECS 448
K F+ G IT VV+ + Q FGF+ + + + L T +E++GK +E
Sbjct: 121 DFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKT-FHELNGKMVEVK 179
Query: 449 LAKPE 453
A P+
Sbjct: 180 RAVPK 184
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI- 258
+++IGGI+ + EE L+ + + GEV E IM+ + +G +G+ FV F +A + I
Sbjct: 6 GKLFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVII 65
Query: 259 ------------------EELNNSEFKGKKIKCSSSQAK-HRLFIGNIPKKWTVEDMKKV 299
++ N + ++ S + ++F+G +P T D K
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 300 VADVGPGVISIELLKDLQSSGRNRGFAFIEY 330
G + + ++ D + R RGF FI Y
Sbjct: 126 FDQFGT-ITDVVVMYDHNTQ-RPRGFGFITY 154
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 50/83 (60%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
S++++IGG++ + E LR G+V + +I+ +++G +G+ F+ F T E AS A+
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 259 EELNNSEFKGKKIKCSSSQAKHR 281
+ ++N E G+ ++ + + + R
Sbjct: 99 QAMDNKELDGRTVRVNYATERAR 121
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 57.4 bits (137), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 50/83 (60%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
S++++IGG++ + E LR G+V + +I+ +++G +G+ F+ F T E AS A+
Sbjct: 39 SAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSAL 98
Query: 259 EELNNSEFKGKKIKCSSSQAKHR 281
+ ++N E G+ ++ + + + R
Sbjct: 99 QAMDNKELDGRTVRVNYATERAR 121
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 57.4 bits (137), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 10/176 (5%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
++F+GN+P E + ++ G + I + + + R+RGF F+ E +
Sbjct: 123 KIFVGNLPFDVDSEKLAQLFEQ--SGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAV 180
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNS----ESSAVSQVKAVYVKNLPENITQDSLKKLFEH 396
K S F+L+ TV+ A PR + + + YV NLP ++ SL++LF
Sbjct: 181 NKFSG--FELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSE 238
Query: 397 HGKITKV-VLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 451
HGK+ V+ ++G+ + FGFV S+ + A+ + +G+ + ++A+
Sbjct: 239 HGKVESAQVVYDRETGRSRG-FGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAE 293
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 57.0 bits (136), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
SS+++IGG++ NV ++ LR + G+V E R++ +E+G +G+ FV F ++E A+ A+
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Query: 259 EELNNSEFKGKKIKCSSSQAKH 280
++ + G+ I+ S + +
Sbjct: 95 -SMDGQDLNGRNIRVSYANDRQ 115
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 279 KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 338
+ +L + IP E +K+ ++ G + ++ +S+GR+RGF ++ + A +
Sbjct: 3 QRKLVVLGIPWDVDTEGLKEYMSKYGE--LEDCIVMKERSTGRSRGFGYVTF---ASVDD 57
Query: 339 SRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHG 398
+++ +S + L + V A P+ + +V ++V +P ++T+++ + FE +G
Sbjct: 58 AKEVLSGEHV-LGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYG 116
Query: 399 KITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEAD 455
IT + +P + + GF+ F + S + +E +E+ G + A P+ D
Sbjct: 117 DITDLYMPKDQGSKMHRGIGFITFGNAESVENLM--SETHELGGSAVVVDRATPKED 171
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 272 KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYY 331
+ S+Q++ RLF+GN+P + + ++ + G V+S+E+L D + R+RGFAF+
Sbjct: 101 EAESTQSR-RLFVGNLPFSLSSSQLAQLFGEAG-NVVSVEILYD-DITNRSRGFAFVTMG 157
Query: 332 NHACAEYSRQKMSNSNFK---LENNAPTVSWAEPRNSESSA----VSQVKAVYVKNLPEN 384
N AE + + + ++ N P V R S V +Y NL +
Sbjct: 158 NVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWD 217
Query: 385 ITQDSLKKLFEHH-GKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGK 443
+T L+K F G ++ V+ +G+ + +GFV F AL E+ G+
Sbjct: 218 MTSQYLRKAFAKQPGLLSAKVVYERNNGKSRG-YGFVSFETAEDVEVALSAMNGVEVQGR 276
Query: 444 NLECSLA----KPEADQRSSGTS 462
L LA KP + ++ G +
Sbjct: 277 PLRLKLAVDNRKPSSLDQNKGNN 299
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 16/203 (7%)
Query: 272 KCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYY 331
+ S+Q++ RLF+GN+P + + ++ + G V+S+E+L D + R+RGFAF+
Sbjct: 101 EAESTQSR-RLFVGNLPFSLSSSQLAQLFGEAG-NVVSVEILYD-DITNRSRGFAFVTMG 157
Query: 332 NHACAEYSRQKMSNSNFK---LENNAPTVSWAEPRNSESSA----VSQVKAVYVKNLPEN 384
N AE + + + ++ N P V R S V +Y NL +
Sbjct: 158 NVEDAEEAIRMFDGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWD 217
Query: 385 ITQDSLKKLFEHH-GKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGK 443
+T L+K F G ++ V+ +G+ + +GFV F AL E+ G+
Sbjct: 218 MTSQYLRKAFAKQPGLLSAKVVYERNNGKSRG-YGFVSFETAEDVEVALSAMNGVEVQGR 276
Query: 444 NLECSLA----KPEADQRSSGTS 462
L LA KP + ++ G +
Sbjct: 277 PLRLKLAVDNRKPSSLDQNKGNN 299
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 279 KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 338
+ +L + IP E +K+ ++ G + ++ +S+GR+RGF ++ + A +
Sbjct: 3 QRKLVVLGIPWDVDTEGLKEYMSKYGE--LEDCIVMKERSTGRSRGFGYVTF---ASVDD 57
Query: 339 SRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHG 398
+++ +S + L + V A P+ + +V ++V +P ++T+++ + FE +G
Sbjct: 58 AKEVLSGEHV-LGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYG 116
Query: 399 KITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEAD 455
IT + +P + + GF+ F + S + +E +E+ G + A P+ D
Sbjct: 117 DITDLYMPKDQGSKMHRGIGFITFGNAESVENLM--SETHELGGSAVVVDRATPKED 171
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 279 KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 338
+ +L + IP E +K+ ++ G + ++ +S+GR+RGF ++ + A +
Sbjct: 3 QRKLVVLGIPWDVDTEGLKEYMSKYGE--LEDCIVMKERSTGRSRGFGYVTF---ASVDD 57
Query: 339 SRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHG 398
+++ +S + L + V A P+ + +V ++V +P ++T+++ + FE +G
Sbjct: 58 AKEVLSGEHV-LGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYG 116
Query: 399 KITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEAD 455
IT + +P + + GF+ F + S + +E +E+ G + A P+ D
Sbjct: 117 DITDLYMPKDQGSKMHRGIGFITFGNAESVENLM--SETHELGGSAVVVDRATPKED 171
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Query: 279 KHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEY 338
+ +L + IP E +K+ ++ G + ++ +S+GR+RGF ++ + A +
Sbjct: 3 QRKLVVLGIPWDVDTEGLKEYMSKYGE--LEDCIVMKERSTGRSRGFGYVTF---ASVDD 57
Query: 339 SRQKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHG 398
+++ +S + L + V A P+ + +V ++V +P ++T+++ + FE +G
Sbjct: 58 AKEVLSGEHV-LGDRMLEVKVATPKEEMRAPAKKVTRIFVARIPPSVTEETFRSHFEKYG 116
Query: 399 KITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPEAD 455
IT + +P + + GF+ F + S + +E +E+ G + A P+ D
Sbjct: 117 DITDLYMPKDQGSKMHRGIGFITFGNAESVENLM--SETHELGGSAVVVDRATPKED 171
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 77/173 (44%), Gaps = 6/173 (3%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
++FIG + ++ T+ K G S+ ++KD ++ G+ RGF FI Y + + +
Sbjct: 46 KIFIGGLARETTIAQFIKHFGKYGEITDSV-IMKDRKT-GQPRGFGFITYADPSVVD--- 100
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSESSAVSQVKAVYVKNLPENITQDSLKKLFEHHGKI 400
K+ + + + + PR + S + K ++V +P N+T+D + F +G++
Sbjct: 101 -KVIEDSHIINSKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
Query: 401 TKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAKPE 453
+ S FGFV F + L K E G +E A+P+
Sbjct: 160 KDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPK 212
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 46/81 (56%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+ ++++GGI +NV+E++ R F GEV + +IM+ + +G+ FV F T+E +
Sbjct: 132 TKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLL 191
Query: 259 EELNNSEFKGKKIKCSSSQAK 279
N EF G +++ ++ K
Sbjct: 192 SMGNKIEFAGTQVEIKKAEPK 212
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 83/180 (46%), Gaps = 28/180 (15%)
Query: 173 LEMRFNHTNDEVEKKKHAE-----LLALPPHSSEVYIGGIANNVSEEDLRVFCQSVGEVS 227
L + + T D E + A+ PP +++++G +V E L + G V
Sbjct: 77 LSLDWEPTADAAETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVE 136
Query: 228 EVRIMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKH------- 280
++ +++ +G+ FV T E A A+E+ N ++ G+ + + + K
Sbjct: 137 IAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTE 196
Query: 281 ----------RLFIGNIPKKWTVED--MKKVVADVGPGVISIELLKDLQSSGRNRGFAFI 328
R+++ N+ W V++ +++V ++ G ++S ++ D + +GR+RGF F+
Sbjct: 197 RAPRTFEPVLRIYVANL--AWEVDNSRLEQVFSEHGK-IVSARVVYD-RETGRSRGFGFV 252
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
+++IGGI+ + +E+ LR + Q+ G+V E IMK + +G +G+ FV F +A + +
Sbjct: 4 GKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
Query: 260 E---LNNSEFKGKK--------IKCSSSQAKH-----------RLFIGNIPKKWTVEDMK 297
E ++ + KK + S+ + H ++F+G + T D K
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 298 KVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAE 337
G + + ++ D + R RGF FI Y + E
Sbjct: 124 NYFDQFGT-ITDVVVMYDHNTQ-RPRGFGFITYDSEEAVE 161
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
+++IGGI+ + +E+ LR + Q+ G+V E IMK + +G +G+ FV F +A + +
Sbjct: 4 GKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
Query: 260 E---LNNSEFKGKK--------IKCSSSQAKH-----------RLFIGNIPKKWTVEDMK 297
E ++ + KK + S+ + H ++F+G + T D K
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 298 KVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAE 337
G + + ++ D + R RGF FI Y + E
Sbjct: 124 NYFDQFGT-ITDVVVMYDHNTQ-RPRGFGFITYDSEEAVE 161
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
+++IGGI+ + +E+ LR + Q+ G+V E IMK + +G +G+ FV F +A + +
Sbjct: 4 GKLFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVM 63
Query: 260 E---LNNSEFKGKK--------IKCSSSQAKH-----------RLFIGNIPKKWTVEDMK 297
E ++ + KK + S+ + H ++F+G + T D K
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 298 KVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAE 337
G + + ++ D + R RGF FI Y + E
Sbjct: 124 NYFDQFGT-ITDVVVMYDHNTQ-RPRGFGFITYDSEEAVE 161
>Medtr7g109810.2 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 385
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
+VY+ + SE D+R+ Q G + EV +++ K +G R+G V + T + A AI+
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 261 LNNS-EFKGKKIKCS---SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKD- 315
L+N F G+ + + + R + + + D +VV V G I+ E K
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 316 ----LQSSG--------RNRGFAFIEYYNHACA 336
G RNRG+ F+++YN A
Sbjct: 195 IEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMA 227
>Medtr7g109810.3 | flowering time control FCA-like protein | HC |
chr7:44985779-44980846 | 20130731
Length = 288
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 82/181 (45%), Gaps = 18/181 (9%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
+VY+ + SE D+R+ Q G + EV +++ K +G R+G V + T + A AI+
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 261 LNNS-EFKGKK---IKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKD- 315
L+N F G+ + + + + R + + + D +VV V G I+ E K
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 316 ----LQSSG--------RNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAP-TVSWAEP 362
G RNRG+ F+++YN A + + + + + P V +AEP
Sbjct: 195 IEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMALAAIKGLDRTFTMRGCDQPLIVRFAEP 254
Query: 363 R 363
+
Sbjct: 255 K 255
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 54.3 bits (129), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 95/220 (43%), Gaps = 40/220 (18%)
Query: 173 LEMRFNHTNDEVEKKKHAELLAL-----PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVS 227
L + + T D E + A+ A PP +++++G +V E L + G V
Sbjct: 77 LSLDWEPTADAAETETGADDSAEGYFVEPPEDAKLFVGNFPFDVDSEKLAMLFGQAGTVE 136
Query: 228 EVRIMKAKESGERKGYAFVAFKTKELASQAIEELNNSEFKGKKIKCSSSQAKH------- 280
++ +++ +G+ FV T E A A+E+ N ++ G+ + + + K
Sbjct: 137 IAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKFNGYDYNGRSLVVNKASPKGSRPERTE 196
Query: 281 ----------RLFIGNIPKKWTVED--MKKVVADVGPGVISIELLKDLQSSGRNRGFAFI 328
R+++ N+ W V++ +++V ++ G ++S ++ D + +GR+RGF F+
Sbjct: 197 RAPRTFEPVLRIYVANL--AWEVDNSRLEQVFSEHGK-IVSARVVYD-RETGRSRGFGFV 252
Query: 329 EY-----YNHACAEYSRQKMSNSNFKLENNAPTVSWAEPR 363
N A A Q LE VS AE R
Sbjct: 253 TMSDETEMNDAIAALDGQ-------SLEGRTIRVSVAEDR 285
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 13/179 (7%)
Query: 281 RLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFAFIEYYNHACAEYSR 340
+LF+GN P E + + G I+ E++ + Q+ +RGF F+ AE +
Sbjct: 110 KLFVGNFPFDVDSEKLAMLFGQAGTVEIA-EVIYNRQTD-LSRGFGFVTMSTVEEAESAV 167
Query: 341 QKMSNSNFKLENNAPTVSWAEPRNSESSAVSQ-------VKAVYVKNLPENITQDSLKKL 393
+K + ++ + V+ A P+ S + V +YV NL + L+++
Sbjct: 168 EKFNGYDYN--GRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQV 225
Query: 394 FEHHGKITKV-VLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLAK 451
F HGKI V+ ++G+ + FGFV SD + A+ + ++G+ + S+A+
Sbjct: 226 FSEHGKIVSARVVYDRETGRSRG-FGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAE 283
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 45/79 (56%)
Query: 204 IGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEELNN 263
+ G++ + E LR GEV + RI+ +E+G +G+ F+ F + E AS AI+ L+
Sbjct: 54 VAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDG 113
Query: 264 SEFKGKKIKCSSSQAKHRL 282
+ G++++ + + + R+
Sbjct: 114 QDLHGRRVRVNYANERPRV 132
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
V++G I + +EE L+ C+ VG V R++ +E+G+ KGY F + +E A A L
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 262 NNSEFKGKKIKC 273
E G++++
Sbjct: 91 QGYEINGRQLRV 102
>Medtr7g109810.1 | flowering time control FCA-like protein | HC |
chr7:44985779-44978011 | 20130731
Length = 498
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 201 EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEE 260
+VY+ + SE D+R+ Q G + EV +++ K +G R+G V + T + A AI+
Sbjct: 75 KVYVAPVPRTASEADVRLVFQGYGTIVEVVLLRDKATGVRQGSCLVKYSTFDEADMAIKA 134
Query: 261 LNNS-EFKGKKIKCS---SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKD- 315
L+N F G+ + + + R + + + D +VV V G I+ E K
Sbjct: 135 LSNQYTFPGESSPVVVRFADRKRERFGLRDFCQNMERRDPPEVVGKVYVGCINNEASKQE 194
Query: 316 ----LQSSG--------RNRGFAFIEYYNHACA 336
G RNRG+ F+++YN A
Sbjct: 195 IEEIFSPYGHIEDVVVLRNRGYGFVKFYNREMA 227
>Medtr1g115375.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:52075123-52071412 | 20130731
Length = 490
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 82/145 (56%), Gaps = 17/145 (11%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
+++VY+GGI SE+D+ + + G ++E+ M ++G+ +G A ++FKT+ A +A+
Sbjct: 219 ATKVYVGGIPYYSSEDDIHSYFEGCGTITEINCMTFPDTGKFRGIAIISFKTEAAAKRAL 278
Query: 259 EELNNSEFKGKKIK---CSSSQAK----------HRLFIGNIPKKWTVEDMKKVVADVGP 305
L+ ++ G +K C ++QA +R+++G++ + T E+++K ++
Sbjct: 279 -ALDGADMGGLFLKIQPCKATQATRFTPEMKEGYNRIYVGSLSWEITEEELRKFFSNCNV 337
Query: 306 GVISIELLKDLQSSGRNRGFAFIEY 330
I + + K+ +G RG+A +++
Sbjct: 338 KAIRLGMDKE---TGEFRGYAHVDF 359
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 192 LLALPPHSS-EVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKT 250
LL + HSS +++I G++ N +E LR + G++ EV+++ +GE KGY FV F +
Sbjct: 24 LLCVRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNS 83
Query: 251 KELASQAIEELNNSEFKGKKIK 272
+ A+ A +EL+ G++I+
Sbjct: 84 ETAAATARKELHGQIVDGRRIR 105
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 41/60 (68%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
SS+++IGG++ NV ++ LR + G+V E R++ +E+G +G+ FV F ++E A+ A+
Sbjct: 35 SSKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 112/289 (38%), Gaps = 52/289 (17%)
Query: 202 VYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIEEL 261
VY+G I VSE L+ S G + ++++ E+ Y FV + + A+ AI L
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRK----EKSSYGFVDYFDRSSAAIAIVTL 103
Query: 262 NNSEFKGKKIKCSSSQAKHR---------LFIGNIPKKWTVEDMKKVVADVGPGVISIEL 312
N G+ IK + + + + +F+G++ + T + + +
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYS-SCSDARV 162
Query: 313 LKDLQSSGRNRGFAFIEYYNHACAEY-----------SRQKMSN-----SNFKLENNAP- 355
+ D Q +GR+RGF F+ + N A+ SRQ N +N EN +
Sbjct: 163 MWD-QKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSE 221
Query: 356 ----------TVSWAEPRNSESSAVS--QVKAVYVKNLPENITQDSLKKLFE--HHGKIT 401
T A+ S+ S Q VYV NL +T L F G I
Sbjct: 222 SKSVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIE 281
Query: 402 KVVLPPAKSGQEKSRFGFVHFSDRSSAMKALKNTEKYEIDGKNLECSLA 450
V + Q FGFV +S A A++ + GK ++CS
Sbjct: 282 DVRV------QRDKGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWG 324
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 19/198 (9%)
Query: 267 KGKKIKCSSSQAKHRLFIGNIPKKWTVEDMKKVVADVGPGVISIELLKDLQSSGRNRGFA 326
+ ++ K ++S RL++GN+P T + + A+ G V+S+E++ D + + R+RGFA
Sbjct: 96 QDEEQKVTTSDDAGRLYVGNLPFSMTSSQLADIFAEAGT-VVSVEIVYD-RLTDRSRGFA 153
Query: 327 FI-----EYYNHACAEYSRQKMSNSNFKLENNAPTVSWA--------EPRNSESSAVSQV 373
F+ E A + ++ + K+ N P V + RNS V
Sbjct: 154 FVTMKSAEEAKEAIRMFDGSQVGGRSAKV--NFPEVPKGGERLVMGQKVRNSYRGFVDSP 211
Query: 374 KAVYVKNLPENITQDSLKKLF-EHHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKAL 432
+Y NL + L+ F E G + ++ +G+ + FGFV F AL
Sbjct: 212 HKIYAGNLGWGMNSQDLRDAFDEQPGLLGAKIIYERDNGRSRG-FGFVTFETAEHLEAAL 270
Query: 433 KNTEKYEIDGKNLECSLA 450
E+ G+ L +LA
Sbjct: 271 NAMNGVEVQGRPLRLNLA 288
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
+++++GG++ +V E+ L+ S G+V+EVRI+ K+SG +G+ FV F ++ A A +
Sbjct: 36 NKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKD 95
Query: 260 ELNNSEFKGKKIKCSSSQAKHR 281
++ G+ ++ + + K R
Sbjct: 96 AMDGKALLGRPLRINFALEKPR 117
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
++++++GGI+ N E+ L G+V + RI+ +ESG KG+ FV + T E AS AI
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 259 EELNNSEFKGKKIK 272
+ L+ + G+++
Sbjct: 103 QALDGQDLYGRRVG 116
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%)
Query: 199 SSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAI 258
++++++GGI+ N E+ L G+V + RI+ +ESG KG+ FV + T E AS AI
Sbjct: 43 NTKLFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAI 102
Query: 259 EELNNSEFKGKKIK 272
+ L+ + G+++
Sbjct: 103 QALDGQDLYGRRVG 116
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 8/108 (7%)
Query: 200 SEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELASQAIE 259
S + + + V+E+ L+ GE+++V++M+ K +G+ + +AF+ F+T + A AI+
Sbjct: 25 SRICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTK-NGKSRQFAFIGFRTDQEAQAAIK 83
Query: 260 ELNNSEFKGKKIKCSSSQAKHRLFIGNIPKKW----TVEDMKKVVADV 303
N S + I C +Q +L N+P+ W T +D K + DV
Sbjct: 84 YFNKSYLDTQAITCEVAQ---KLGDANLPRPWSRHSTKKDDKVITTDV 128
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 120/302 (39%), Gaps = 60/302 (19%)
Query: 196 PPHSSEVYIGGIANNVSEEDLRVFCQSVGEVSEVRIMKAKESGERKGYAFVAFKTKELAS 255
P VY+G + V+E L+ G V ++ + E+ Y F+ + + A+
Sbjct: 58 PSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRK----EKSSYGFIHYFDRRSAA 113
Query: 256 QAIEELNNSEFKGKKIKCS---------SSQAKHRLFIGNIPKKWTVEDMKKVVADVGPG 306
AI LN G+ IK + + + +F+G++ + T + + V
Sbjct: 114 LAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFS-VYQS 172
Query: 307 VISIELLKDLQSSGRNRGFAFIEYYNHACAEYSRQKMSNSNFKLENNAPTVSWA------ 360
++ D Q +GR+RGF F+ + + A+ + ++ L + +WA
Sbjct: 173 CSDARVMWD-QKTGRSRGFGFVSFRSQQDAQSAINDLTGK--WLGSRQIRCNWATKGAGG 229
Query: 361 --EPRNSESSAV-----------------------SQVKAVYVKNLPENITQDSLKKLFE 395
E +NS+S +V Q VYV NL TQ L + F
Sbjct: 230 IEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFH 289
Query: 396 --HHGKITKVVLPPAKSGQEKSRFGFVHFSDRSSAMKALK--NTEKYEIDGKNLECSLA- 450
G I +V + Q FGFV +S + A A++ N + Y + GK ++CS
Sbjct: 290 ALGAGVIEEVRV------QRDKGFGFVRYSTHAEAALAIQMGNAQSY-LCGKIIKCSWGS 342
Query: 451 KP 452
KP
Sbjct: 343 KP 344