Miyakogusa Predicted Gene

Lj1g3v4717440.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4717440.1 tr|G7KQW9|G7KQW9_MEDTR Signal recognition
particle 54 kDa protein OS=Medicago truncatula
GN=MTR_7g10,90.06,0,SRP54,Signal recognition particle, SRP54 subunit,
GTPase domain; SRP54,Signal recognition particle, ,CUFF.33101.1
         (494 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g104890.1 | signal recognition particle 54 kDa protein | H...   858   0.0  
Medtr7g104890.2 | signal recognition particle 54 kDa protein | H...   702   0.0  
Medtr4g010050.1 | signal recognition particle 54 kDa protein | H...   188   1e-47
Medtr2g104050.1 | signal recognition particle 54 kDa protein | H...   184   1e-46
Medtr8g032340.1 | signal recognition particle receptor FtsY | HC...   116   5e-26
Medtr7g085470.1 | signal recognition particle protein | LC | chr...    99   1e-20
Medtr4g130770.1 | signal recognition particle receptor protein, ...    94   3e-19
Medtr8g032480.1 | signal recognition particle protein | HC | chr...    93   5e-19

>Medtr7g104890.1 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 553

 Score =  858 bits (2218), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/493 (86%), Positives = 452/493 (91%)

Query: 2   PGVVRAEMFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQ 61
           P VVRAEMFGQLTTGLE+AWNKLKGEEVLTK+NIVEPMRDIRRALLEADVSLPVVRRFVQ
Sbjct: 60  PVVVRAEMFGQLTTGLESAWNKLKGEEVLTKDNIVEPMRDIRRALLEADVSLPVVRRFVQ 119

Query: 62  SVSDQAVGVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGK 121
           SV+DQAVGVGV RGVKPDQQLVKIVH+ELV+LMGGEVSEL FAK+G TVILLAGLQGVGK
Sbjct: 120 SVTDQAVGVGVTRGVKPDQQLVKIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGK 179

Query: 122 TTVCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQ 181
           TTVCAKL+NY KKQGKSCMLVAGD+YRPAAIDQLTILGKQV VPVYTAGTDVKPS+IA+Q
Sbjct: 180 TTVCAKLANYFKKQGKSCMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQ 239

Query: 182 GLEEAXXXXXXXXXXXTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVT 241
           G EEA           TAGRLQIDKAMMDELK+VK+ LNPTEVLLVVDAMTGQEAAALVT
Sbjct: 240 GFEEAKKKKIDVVIVDTAGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVT 299

Query: 242 TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRI 301
           TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERM+DLEPFYPDRMAGRI
Sbjct: 300 TFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRI 359

Query: 302 LGMGDVLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIP 361
           LGMGDVLSFVEKAQEVMQQEDAE LQ+KIMSAKFDFNDFLKQTRAVAQMGSVSRV+GMIP
Sbjct: 360 LGMGDVLSFVEKAQEVMQQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIP 419

Query: 362 GMSKVTPAQIREAEKNLKNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVS 421
           GM+KVTPAQIREAE+NL+ ME +I+AMTPEEREKPELLAESPVRRKRVAQ+SGKTEQQVS
Sbjct: 420 GMAKVTPAQIREAERNLEIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVS 479

Query: 422 QVVAQLFQMRVRMKNLMGVMQGGSMPTLSNXXXXXXXXXXXXXGTARRRKRSEQRSLFAD 481
           Q+VAQLFQMRVRMKNLMGVM+GGSMPTLSN             GTARRRK++E R LFAD
Sbjct: 480 QLVAQLFQMRVRMKNLMGVMEGGSMPTLSNLEEALKTEEKAPPGTARRRKKAESRRLFAD 539

Query: 482 SAARPTPRGFGSK 494
           S  R  PRGFGSK
Sbjct: 540 STLRQPPRGFGSK 552


>Medtr7g104890.2 | signal recognition particle 54 kDa protein | HC |
           chr7:42524740-42517179 | 20130731
          Length = 420

 Score =  702 bits (1813), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/416 (84%), Positives = 375/416 (90%)

Query: 79  DQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAKLSNYLKKQGKS 138
           D  +++IVH+ELV+LMGGEVSEL FAK+G TVILLAGLQGVGKTTVCAKL+NY KKQGKS
Sbjct: 4   DCWVLQIVHDELVQLMGGEVSELTFAKTGPTVILLAGLQGVGKTTVCAKLANYFKKQGKS 63

Query: 139 CMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAXXXXXXXXXXXT 198
           CMLVAGD+YRPAAIDQLTILGKQV VPVYTAGTDVKPS+IA+QG EEA           T
Sbjct: 64  CMLVAGDVYRPAAIDQLTILGKQVDVPVYTAGTDVKPSDIAKQGFEEAKKKKIDVVIVDT 123

Query: 199 AGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLD 258
           AGRLQIDKAMMDELK+VK+ LNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLD
Sbjct: 124 AGRLQIDKAMMDELKDVKRVLNPTEVLLVVDAMTGQEAAALVTTFNLEIGITGAILTKLD 183

Query: 259 GDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM 318
           GDSRGGAALSVKEVSGKPIKLVGRGERM+DLEPFYPDRMAGRILGMGDVLSFVEKAQEVM
Sbjct: 184 GDSRGGAALSVKEVSGKPIKLVGRGERMEDLEPFYPDRMAGRILGMGDVLSFVEKAQEVM 243

Query: 319 QQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGMSKVTPAQIREAEKNL 378
           QQEDAE LQ+KIMSAKFDFNDFLKQTRAVAQMGSVSRV+GMIPGM+KVTPAQIREAE+NL
Sbjct: 244 QQEDAEDLQKKIMSAKFDFNDFLKQTRAVAQMGSVSRVIGMIPGMAKVTPAQIREAERNL 303

Query: 379 KNMEAMIEAMTPEEREKPELLAESPVRRKRVAQESGKTEQQVSQVVAQLFQMRVRMKNLM 438
           + ME +I+AMTPEEREKPELLAESPVRRKRVAQ+SGKTEQQVSQ+VAQLFQMRVRMKNLM
Sbjct: 304 EIMEVIIKAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLM 363

Query: 439 GVMQGGSMPTLSNXXXXXXXXXXXXXGTARRRKRSEQRSLFADSAARPTPRGFGSK 494
           GVM+GGSMPTLSN             GTARRRK++E R LFADS  R  PRGFGSK
Sbjct: 364 GVMEGGSMPTLSNLEEALKTEEKAPPGTARRRKKAESRRLFADSTLRQPPRGFGSK 419


>Medtr4g010050.1 | signal recognition particle 54 kDa protein | HC |
           chr4:2207891-2201607 | 20130731
          Length = 496

 Score =  188 bits (477), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 127/454 (27%), Positives = 228/454 (50%), Gaps = 26/454 (5%)

Query: 4   VVRAEMFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVR------ 57
           +V A++ G +T  L+    ++    ++ ++ + E + +I RALL++DV   +VR      
Sbjct: 1   MVLADLGGSITRALK----QMSNATIIDEKVLNECLNEITRALLQSDVQFKLVRDMQTNI 56

Query: 58  RFVQSVSDQAVGVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQ 117
           + + ++ D A G    R ++      + V  EL  ++          K   +V++  GLQ
Sbjct: 57  KKIVNLDDLAAGHNKRRIIQ------QAVFNELCNILDPGKPAFTPKKGKASVVMFVGLQ 110

Query: 118 GVGKTTVCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSE 177
           G GKTT C K + Y +K+G    LV  D +R  A DQL     +  +P Y +  +  P +
Sbjct: 111 GSGKTTTCTKYAFYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVK 170

Query: 178 IARQGLEEAXXXXXXXXXXXTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAA 237
           IA +G+E             T+GR + + A+ +E+++V ++  P  V+ V+D+  GQ A 
Sbjct: 171 IAVEGVERFKKENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAF 230

Query: 238 ALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRM 297
                F   + +   I+TK+DG ++GG ALS    +  P+  +G GE MD+ E F     
Sbjct: 231 DQAQAFKQSVAVGAVIITKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPF 290

Query: 298 AGRILGMGDVLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVM 357
             R+LG GD+  F+ K  EV+  +   +L  K+    F      +Q + + +MG +S V 
Sbjct: 291 VSRLLGQGDLSGFMNKIHEVVPMDQQPELLNKLQEGTFTLRIMYEQFQNILKMGPMSEVF 350

Query: 358 GMIPGMSK--VTPAQIREAEKNLKNMEAMIEAMTPEERE--KPELLAESPVRRKRVAQES 413
            M+PG S   +   + ++++  +K    M+++MT EE +   P+L+ ES  R  R+A+ S
Sbjct: 351 SMLPGFSNELLPKGKDQDSQAKIKRYMTMMDSMTNEELDSSNPKLMNES--RMMRIARGS 408

Query: 414 GKTEQQVSQVVAQLFQMRVRMKNLMGVMQGGSMP 447
           G+   QV +V+  + + + R+  +   M+G  +P
Sbjct: 409 GR---QVREVMEMMEEYK-RLAKIWSKMKGLKIP 438


>Medtr2g104050.1 | signal recognition particle 54 kDa protein | HC |
           chr2:44822528-44828469 | 20130731
          Length = 470

 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 215/425 (50%), Gaps = 10/425 (2%)

Query: 4   VVRAEMFGQLTTGLEAAWNKLKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSV 63
           +V AE+ G +T  L    +K+    V+ ++ + + + +I RALL++DV   ++R    ++
Sbjct: 1   MVLAELGGSITRAL----HKMNNTTVIDEKALTDCLNEINRALLQSDVRFELIRDMQINI 56

Query: 64  SDQAVGVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTT 123
            +      +  G    + + + V +EL +++          +  T+V++  GLQG GKTT
Sbjct: 57  KNIVNLEQLAAGHNKRKIIQQAVFDELCRMLNPGKPSFVPKREKTSVVMFVGLQGSGKTT 116

Query: 124 VCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGL 183
            C K ++  +K+G    LV  D +R  A DQL     +  +P Y +  +  P +IA +G+
Sbjct: 117 TCTKYAHCYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGV 176

Query: 184 EEAXXXXXXXXXXXTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAALVTTF 243
           E             T+GR + + ++ +E++++ ++  P  V+ V+D+  GQ A      F
Sbjct: 177 ERFKEEDHDLIIVDTSGRHKQEASLFEEMRQLSEATKPDLVIFVMDSSIGQAAFNQAQAF 236

Query: 244 NLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILG 303
              + +   I+TK+DG ++GG +LS    +  P+  +G GE MD  E F       R+LG
Sbjct: 237 KQIVAVGAVIITKMDGHAKGGGSLSAVAATKSPVIFIGTGEHMDQFEVFEVQPFVSRLLG 296

Query: 304 MGDVLSFVEKAQEVMQQEDAEKLQEKIMSAKFDFNDFLKQTRAVAQMGSVSRVMGMIPGM 363
           MGD+   ++K   V+  +    L +K+    F      +Q +   +MG +  ++ MIPG 
Sbjct: 297 MGDLSGLIDKIHGVVPMDQQADLVQKLSKGNFTLRIMYEQFQNALKMGPMGELVSMIPGF 356

Query: 364 SKVTPAQIREAEKN--LKNMEAMIEAMTPEERE--KPELLAESPVRRKRVAQESGKTEQQ 419
           S     Q  E E +  LK+   M+++MT EE +   P+L+ ES  R  R+A+ SG+  ++
Sbjct: 357 SSELIPQGHENESSAKLKHYMTMMDSMTNEELDSSNPKLINES--RMMRIARGSGRLVRE 414

Query: 420 VSQVV 424
           V +++
Sbjct: 415 VLELM 419


>Medtr8g032340.1 | signal recognition particle receptor FtsY | HC |
           chr8:12218070-12210399 | 20130731
          Length = 371

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 148/305 (48%), Gaps = 17/305 (5%)

Query: 12  QLTTGLEAAWNKLKG-EEVLTKENIVEP---MRDIRRALLEADVSLPVVRRFVQSVSDQA 67
           +L +G     N L   +E+L   N+ +    + ++  ALL +D    +  + V+++ +  
Sbjct: 69  KLFSGFSKTRNNLSVIDELLLYWNLSDTDKVLDELEEALLVSDFGPKITIKIVENLREDI 128

Query: 68  VGVGVIRGVKPDQQLVKIVHEELVKLMGGEVSELAFAKSGTTVILLAGLQGVGKTTVCAK 127
           +   +  G +  + L K V + L     G  +EL        VI++ G+ G GKTT   K
Sbjct: 129 LSGKLKSGSEIKEALKKNVLDLLSN--KGSKTELQLGYRKPAVIMIVGVNGGGKTTSLGK 186

Query: 128 LSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTD-VKPSEIARQGLEE- 185
           L+  LK  G   +L AGD +R AA DQL I  ++ G  +  A ++  K S +  Q ++  
Sbjct: 187 LAYRLKNGGAKILLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRR 246

Query: 186 --AXXXXXXXXXXXTAGRLQIDKAMMDELKEVKKSLN------PTEVLLVVDAMTGQEAA 237
             A            +G L  +  +M+EL   KK++       P E+LLV+D  TG    
Sbjct: 247 KRARLYISIGVHVIFSG-LHTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNML 305

Query: 238 ALVTTFNLEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRM 297
                FN  +G+TG ILTKLDG +RGG  +SV +  G P+K VG GE ++DL+PF  +  
Sbjct: 306 PQAREFNEVVGVTGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAF 365

Query: 298 AGRIL 302
              I 
Sbjct: 366 VNAIF 370


>Medtr7g085470.1 | signal recognition particle protein | LC |
           chr7:33117310-33115264 | 20130731
          Length = 321

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 138/305 (45%), Gaps = 35/305 (11%)

Query: 24  LKGEEVLTKENIVEPMRDIRRALLEADVSLPVVRRFVQSVSDQAVGVGVIRGVKPDQQLV 83
           L+G + ++ E +++  ++IR+  +       + R F+QS+            ++P  +L+
Sbjct: 11  LRGFDKMSNETVID--KEIRKRCVNE-----ITRAFIQSI------------IEP--KLI 49

Query: 84  KIVHEELVKLMGGEVSELAFAKSGTTV-----ILLAGLQGVGKTTVCAKLSNYLKKQGKS 138
           + +H ++  ++   ++   F  +   +      LL      GKTT CA+ +N+ +K+G  
Sbjct: 50  RDMHAKIKNIIYNHLNLDDFDAARKMIQQVPSCLLVLKVCCGKTTTCAQFANHYQKKGLK 109

Query: 139 CMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEIARQGLEEAX-XXXXXXXXXX 197
             LV  D  R  A DQL  +  +  +P Y     V   +  R+   +             
Sbjct: 110 TGLVCTDTLRNGAFDQLKQIYAETNIPCYGR---VGYCQNCRERCGQMQGGNCDLIIVDV 166

Query: 198 TAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAAL-----VTTFNLEIGITGA 252
           + G  Q + A+++E+ +V K+  P  V+LV+D   GQ A         T F   + I   
Sbjct: 167 SGGHKQEEDALIEEIHQVSKATKPDLVILVIDGNIGQHAFDHRSLKQATAFTQSVDIGAV 226

Query: 253 ILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRILGMGDVLSFVE 312
           I++K+DG + GG +LS    +   +  +G GE MD+ E F        +LGM D   F++
Sbjct: 227 IVSKMDGYAMGGGSLSAVAATKSSVIFIGTGEHMDEFEVFEVKPFVSSLLGMDDWYEFID 286

Query: 313 KAQEV 317
           +  EV
Sbjct: 287 RVYEV 291


>Medtr4g130770.1 | signal recognition particle receptor protein,
           putative | HC | chr4:54489810-54494349 | 20130731
          Length = 631

 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 101/183 (55%), Gaps = 11/183 (6%)

Query: 119 VGKTTVCAKLSNYLKKQGKSCMLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTDVKPSEI 178
           VGK+T  AK++ +L++   + M+ A D +R  A++QL    +++ +P++  G +  P+ +
Sbjct: 436 VGKSTNLAKVAYWLQQHNVNVMMAACDTFRSGAVEQLRTHARRLQIPIFEKGYEKDPAVV 495

Query: 179 ARQGLEEAXXXXXXXXXXXTAGRLQIDKAMMDELKEVKKSLNPTEVLLVVDAMTGQEAAA 238
           A++ ++EA           TAGR+Q ++ +M  L ++    NP  VL V +A+ G +A  
Sbjct: 496 AKEAIQEASRNGSDVVLVDTAGRMQDNEPLMRALSKLIYLNNPDLVLFVGEALVGNDAVD 555

Query: 239 LVTTFNLEIG----------ITGAILTKLDG-DSRGGAALSVKEVSGKPIKLVGRGERMD 287
            ++ FN ++           I G +LTK D  D + GAALS+  +SG P+  VG G+   
Sbjct: 556 QLSKFNQKLADLSTSPTPRLIDGILLTKFDTIDDKVGAALSMVYISGAPVMFVGCGQSYT 615

Query: 288 DLE 290
           DL+
Sbjct: 616 DLK 618


>Medtr8g032480.1 | signal recognition particle protein | HC |
           chr8:12458856-12456172 | 20130731
          Length = 196

 Score = 93.2 bits (230), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 89/173 (51%), Gaps = 11/173 (6%)

Query: 140 MLVAGDIYRPAAIDQLTILGKQVGVPVYTAGTD-VKPSEIARQGLEE---AXXXXXXXXX 195
           +L AGD +R AA DQL I  ++ G  +  A ++  K S +  Q ++    A         
Sbjct: 24  LLAAGDTFRAAASDQLEIWAERTGCEIVVAESEKSKASAVLSQAVKRRKRARLYISIGVH 83

Query: 196 XXTAGRLQIDKAMMDELKEVKKSLN------PTEVLLVVDAMTGQEAAALVTTFNLEIGI 249
              +G L  +  +M+EL   KK++       P E+LLV+D  TG         FN  +G+
Sbjct: 84  VIFSG-LHTNYRLMEELISCKKAVAKVVAGAPNEILLVLDGTTGLNMLPQAREFNEVVGV 142

Query: 250 TGAILTKLDGDSRGGAALSVKEVSGKPIKLVGRGERMDDLEPFYPDRMAGRIL 302
           TG ILTKLDG +RGG  +SV +  G P+K VG GE ++DL+PF  +     I 
Sbjct: 143 TGLILTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIF 195