Miyakogusa Predicted Gene

Lj1g3v4717340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4717340.1 tr|Q9LZC0|Q9LZC0_ARATH Emb|CAB85509.1
OS=Arabidopsis thaliana GN=F8F6_100 PE=4
SV=1,37.43,3e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.33028.1
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g104680.1 | iron-sulfur assembly IscA-like protein | HC | ...   120   8e-28
Medtr3g092470.1 | DUF4228 domain protein | HC | chr3:42239482-42...    55   2e-08

>Medtr7g104680.1 | iron-sulfur assembly IscA-like protein | HC |
           chr7:42426265-42425301 | 20130731
          Length = 132

 Score =  120 bits (300), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/165 (46%), Positives = 91/165 (55%), Gaps = 36/165 (21%)

Query: 1   MGNCLVLLQENVVRVMKTDGKILEYKA--LIKVEQVLADFSGHAVSDSQTGLRHLQPNTK 58
           MGNCLVL Q NVV++MKT+GKILEYK    IK E+VL      + S              
Sbjct: 1   MGNCLVLQQINVVKIMKTNGKILEYKTQTPIKAEKVLPSPPSPSPSSP------------ 48

Query: 59  LLGGQLYYLVTLXXXXXXXXKARKKVRFAEPEVQDVQKSSVVRIKLVLSKQQLHDMLQDG 118
                               K RKKVRFA+PEVQDVQK+S VRIKLV+SKQ+L +ML +G
Sbjct: 49  --------------------KERKKVRFADPEVQDVQKNSAVRIKLVISKQKLQEMLDNG 88

Query: 119 GFSVNKMLSLAQXXXXXXXXXXXXXRREDDVSQGWKPVLESIAEV 163
           G SV KMLSL               ++ DD   GWKPVL+SI EV
Sbjct: 89  GISVEKMLSLVH--GENGMDGEDLCKKSDDACAGWKPVLQSIPEV 131


>Medtr3g092470.1 | DUF4228 domain protein | HC |
           chr3:42239482-42238666 | 20130731
          Length = 141

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 81/171 (47%), Gaps = 38/171 (22%)

Query: 1   MGN---CLV-LLQENVVRVMKTDGKILEYKALIKVEQVLADF-SGHAVSDSQTGLRHLQP 55
           MGN   C++       V+V+K DGKILE+ + I V+ +L +F +  A+ DS+     L  
Sbjct: 1   MGNGSSCIIACTMRKHVKVVKEDGKILEFSSPIHVKDILINFPTNAAIVDSKNATETLSQ 60

Query: 56  NTKLLGGQLYYLVTLXXXXXXXXKARKKVRFAEPEVQDVQKSSVVRIKLVLSKQQLHDML 115
           + +L GG+LYYL+                   E E Q    +   RIK++++KQQL  ++
Sbjct: 61  DHELKGGKLYYLIP---------------HNKEAEEQGGGGTKTKRIKVLITKQQLQQLV 105

Query: 116 QDGGFSVNKMLSLAQXXXXXXXXXXXXXRREDDVSQGW--KPVLESIAEVN 164
                S+ ++LS+                + D VS     KP+L+SI E N
Sbjct: 106 TK-EMSLQELLSVV---------------KTDGVSLTCDRKPILDSIPEEN 140