Miyakogusa Predicted Gene

Lj1g3v4717290.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4717290.1 Non Characterized Hit- tr|I3SBC4|I3SBC4_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.38,0,seg,NULL;
IRON-SULFUR CLUSTER ASSEMBLY PROTEIN,NULL; no description,FeS cluster
biogenesis; HesB-lik,CUFF.33016.1
         (161 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g104600.1 | iron-sulfur cluster assembly protein IscA | HC...   237   3e-63
Medtr8g092030.1 | iron-sulfur cluster assembly protein IscA | HC...    71   5e-13
Medtr8g092030.2 | iron-sulfur cluster assembly protein IscA | HC...    68   4e-12
Medtr1g060070.1 | iron-sulfur cluster assembly protein IscA | HC...    64   5e-11

>Medtr7g104600.1 | iron-sulfur cluster assembly protein IscA | HC |
           chr7:42398843-42396283 | 20130731
          Length = 160

 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/161 (72%), Positives = 130/161 (80%), Gaps = 1/161 (0%)

Query: 1   MQTSSLFRRLAPSLAARFRQNQKLXXXXXXXXXXXXXXXXXXXXXXXHVEPVHMTENCLR 60
           MQTS LFRRLAP LAARF++NQ +                        VEPVH+TENC+R
Sbjct: 1   MQTS-LFRRLAPLLAARFQRNQNIISSFSSSSSSSVLHHATSSPSSPDVEPVHITENCVR 59

Query: 61  RMKELEASESATAPKTLRLSVETGGCSGFQYAFDLDDRINSDDRVFEREGIKLVVDNISY 120
           +MKEL+A+ES++  K LRLSVETGGCSGFQYAF+LDDR NSDDRVFE+EGIKLVVDNISY
Sbjct: 60  KMKELDANESSSGGKMLRLSVETGGCSGFQYAFNLDDRFNSDDRVFEKEGIKLVVDNISY 119

Query: 121 DFVKGATVDYVEELIRSAFVVTENPSAVGGCSCKSSFMVKQ 161
           DFVKGATVDYVEELIRSAF+VTENPSAVGGCSCKSSFMVKQ
Sbjct: 120 DFVKGATVDYVEELIRSAFIVTENPSAVGGCSCKSSFMVKQ 160


>Medtr8g092030.1 | iron-sulfur cluster assembly protein IscA | HC |
           chr8:38413014-38411083 | 20130731
          Length = 178

 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 52  VHMTENCLRRMKELEASESATAPKTLRLSVETGGCSGFQYAFDLDDRINS--DDRVFERE 109
           + +T+N L  + ++ +  S      LR+ V+ GGCSG  Y  D +DR N+  DD + E +
Sbjct: 70  ISLTDNALNHLNKMRSERSQDL--CLRIGVKQGGCSGMSYTMDFEDRANARPDDSIIEYK 127

Query: 110 GIKLVVDNISYDFVKGATVDYVEELIRSAFVVTENPSAVGGCSCKSSF 157
           G  +V D  S  FV G  +DY + LI   F   +NP+A   C C  SF
Sbjct: 128 GFVIVCDPKSLLFVFGMQLDYSDALIGGGFNF-KNPNATQTCGCGKSF 174


>Medtr8g092030.2 | iron-sulfur cluster assembly protein IscA | HC |
           chr8:38413014-38410395 | 20130731
          Length = 177

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 52  VHMTENCLRRMKELEASESATAPKTLRLSVETGGCSGFQYAFDLDDRINS--DDRVFERE 109
           + +T+N L  + ++ +  S      LR+ V+ GGCSG  Y  D +DR N+  DD + E +
Sbjct: 70  ISLTDNALNHLNKMRSERSQDL--CLRIGVKQGGCSGMSYTMDFEDRANARPDDSIIEYK 127

Query: 110 GIKLVVDNISYDFVKGATVDYVEELIRSAFVVTENPSAVGGCSCK 154
           G  +V D  S  FV G  +DY + LI   F   +NP+A   C C+
Sbjct: 128 GFVIVCDPKSLLFVFGMQLDYSDALIGGGFNF-KNPNATQTCGCE 171


>Medtr1g060070.1 | iron-sulfur cluster assembly protein IscA | HC |
           chr1:26159830-26162537 | 20130731
          Length = 137

 Score = 63.9 bits (154), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)

Query: 77  LRLSVETGGCSGFQYAFDLDDRINSDDRVFEREGIKLVVDNISYDFVKGATVDYVEELIR 136
           L+L V+  GC+G  Y  +  D+    D + E +G+K+++D  +   V G  +D+V++ +R
Sbjct: 44  LKLGVKARGCNGLSYTLNYADKKEKFDELVEDKGVKILIDPKALMHVVGTKMDFVDDKLR 103

Query: 137 SAFVVTENPSAVGGCSCKSSFMVK 160
           S FV   NP++ G C C  SFM K
Sbjct: 104 SEFVFI-NPNSKGQCGCGESFMTK 126