Miyakogusa Predicted Gene

Lj1g3v4703000.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4703000.1 tr|B6DRE4|B6DRE4_9LAMI 60S acidic ribosomal
protein P2-like protein OS=Forsythia suspensa GN=RPLP2
P,73.04,2e-19,60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL;
seg,NULL; Ribosomal_60s,Ribosomal protein 60S,CUFF.32975.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0227s0020.1 | 60S acidic ribosomal protein | HC | scaffold0...   103   4e-23
Medtr2g085085.2 | 60S acidic ribosomal protein | HC | chr2:36125...   100   5e-22
Medtr2g085085.1 | 60S acidic ribosomal protein | HC | chr2:36125...   100   5e-22
Medtr1g060600.1 | 60S acidic ribosomal protein | HC | chr1:26385...    96   1e-20

>Medtr0227s0020.1 | 60S acidic ribosomal protein | HC |
           scaffold0227:7789-5926 | 20130731
          Length = 113

 Score =  103 bits (257), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 71/115 (61%), Gaps = 2/115 (1%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
           MK+IAAY+LAVLGGN+APSADD+K+ILSSVG +A+D  +  LLSEVKGKD AE+IASGRE
Sbjct: 1   MKIIAAYMLAVLGGNSAPSADDIKTILSSVGVEAEDSNIELLLSEVKGKDFAELIASGRE 60

Query: 61  KLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 115
           KL+SVP                                      SDDDMGFSLFD
Sbjct: 61  KLASVPS--GGGAVAVAASGGGAAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113


>Medtr2g085085.2 | 60S acidic ribosomal protein | HC |
           chr2:36125832-36124476 | 20130731
          Length = 113

 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 67/115 (58%), Gaps = 2/115 (1%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
           MK+IAAYLLAVLGGN +PSA DLK IL SVG +A+D  +  LLSEVKGKD AE+IASGRE
Sbjct: 1   MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61  KLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 115
           KL+SVP                                      SDDDMGFSLFD
Sbjct: 61  KLASVP--SGGGAVAVSAATGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113


>Medtr2g085085.1 | 60S acidic ribosomal protein | HC |
           chr2:36125832-36124476 | 20130731
          Length = 113

 Score = 99.8 bits (247), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/115 (52%), Positives = 67/115 (58%), Gaps = 2/115 (1%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
           MK+IAAYLLAVLGGN +PSA DLK IL SVG +A+D  +  LLSEVKGKD AE+IASGRE
Sbjct: 1   MKIIAAYLLAVLGGNQSPSASDLKQILGSVGVEAEDCNIELLLSEVKGKDFAELIASGRE 60

Query: 61  KLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 115
           KL+SVP                                      SDDDMGFSLFD
Sbjct: 61  KLASVP--SGGGAVAVSAATGGGAAAAAPAAEAKEEKKVEEKEESDDDMGFSLFD 113


>Medtr1g060600.1 | 60S acidic ribosomal protein | HC |
           chr1:26385779-26387969 | 20130731
          Length = 112

 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/115 (50%), Positives = 67/115 (58%), Gaps = 3/115 (2%)

Query: 1   MKVIAAYLLAVLGGNTAPSADDLKSILSSVGADADDEKLSFLLSEVKGKDLAEVIASGRE 60
           MKV+AAYLLAVLGG+  PSA  +K IL SVGADA+D ++   LSE+KGKD+AEVIASGRE
Sbjct: 1   MKVVAAYLLAVLGGDNTPSAKTIKDILGSVGADAEDNRIESFLSEIKGKDIAEVIASGRE 60

Query: 61  KLSSVPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 115
           KL+SVP                                      SDDDMGFSLFD
Sbjct: 61  KLASVPS---GGGGVAVAAAPASGGAAPAAAEAKKEEKVEEKEESDDDMGFSLFD 112