Miyakogusa Predicted Gene

Lj1g3v4699690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4699690.1 tr|B9GKP5|B9GKP5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_548521 PE=4
SV=1,42.22,0.000006,coiled-coil,NULL; seg,NULL,CUFF.32955.1
         (518 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060890.1 | hypothetical protein | HC | chr1:26523784-2652...   319   4e-87

>Medtr1g060890.1 | hypothetical protein | HC |
           chr1:26523784-26528833 | 20130731
          Length = 504

 Score =  319 bits (817), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 228/541 (42%), Positives = 290/541 (53%), Gaps = 60/541 (11%)

Query: 1   MMAQKQHFLHELLKEDQEPFLLNNYISDRCSQMKRPSPKTSLQAKKRKPIFNQSSNFPVN 60
           MMA ++H LHELLKEDQEPFLLNNYIS + +Q+KR S  T+LQ KK+KP   ++    +N
Sbjct: 1   MMAAQKH-LHELLKEDQEPFLLNNYISHKRNQIKRSSSYTTLQLKKQKPPPTRT----IN 55

Query: 61  LCRKTCLFSFTETATTPDLLRKSPLFEPRSPCKSPNAIFLHIPSRTSALLLEAALRIXXX 120
           LC+  C FSF     TPD+ RKSPLFE  SP KSP    L IP++T++LLLEAAL+I   
Sbjct: 56  LCKNACFFSFQ---NTPDI-RKSPLFELSSPVKSP----LRIPAKTASLLLEAALKIQSK 107

Query: 121 XXXXXXXXXRGFGLFGSLFKRLTQRNNNYSTS-------KSSVKWGS-----RRKLCNGT 168
                    + FG+FGS FK+LTQRN +  +        K  ++W S      RK  N  
Sbjct: 108 KPNSKN---KSFGVFGSFFKKLTQRNRSKKSENEENVSVKDILRWDSSIGRRHRKSFNSI 164

Query: 169 EEKMEESQKESNNASEVGFLCSYNGRTS-SAVWXXXXXXXXXXXXXXXXX---XXXEVIH 224
            E+      E N   EV   CS NGR S S VW                       E + 
Sbjct: 165 VEE------EENKGFEV---CSCNGRPSCSGVWSESNEDKSLDMETSSSGHSCESVEEVE 215

Query: 225 FVTDNQQ---TCDFCSHHSAFCESPFRFALQTXXXXXXGHHTPELLSPS----RHIIEDK 277
           FV   ++    C     H  FCESPFRFAL+       G  TPE  SP+    R  IEDK
Sbjct: 216 FVMSKKKENVDCACFDPHGFFCESPFRFALERSASSSSGRRTPEFSSPAESPRRPQIEDK 275

Query: 278 ESKGGETLNXXXXXXXXXXXXXXQCSPVSVLDPPFXXXXXXXXXXXXXXXXXXXXXXXXX 337
           E+ G + +N              Q SPVSVLDP F                         
Sbjct: 276 ENNGVDGVNKFQSGEDEDEKE--QFSPVSVLDPLFEDYDDDDDCHENDDDEGDFD----- 328

Query: 338 LESSYAIVQRAKQQLLYKLCRFEKLAGLDPVXXXXXXXXXXXXXXXXXXXXXXHEDEDRE 397
           +E SYA VQR+KQ LL +L RFE+LA LDP+                       E    E
Sbjct: 329 MECSYANVQRSKQLLLDRLRRFEQLAELDPLELEKRMQEDNEAFEDDDYEEDESEASSEE 388

Query: 398 ASYKENDLRVIVLQAVYQSRVNDRQQIPQEFRKLVFDLIVEEERGLNSKEDKEVVERKIC 457
            +     LR IV + +    V++R Q  + F++LV+DLI EEE+ LN  +D ++V +++C
Sbjct: 389 KA-----LREIVHEILCHPSVHERWQDQKVFKRLVYDLIKEEEKELNFSQDMDIVMKRVC 443

Query: 458 KRLEVWKEVESNTIDMMIEEDFNREDCVWKKNGEQIKMMAGEVELAIFGFLVEEFSEELV 517
           K++E+WKEVESNTIDMMIEEDF+RE+  WKKN E+ K +AGEVELAIF  LV+EFSEELV
Sbjct: 444 KKMELWKEVESNTIDMMIEEDFSREEIGWKKNAEETKELAGEVELAIFCLLVDEFSEELV 503

Query: 518 C 518
           C
Sbjct: 504 C 504