Miyakogusa Predicted Gene
- Lj1g3v4695520.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4695520.3 Non Characterized Hit- tr|I1JPX0|I1JPX0_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.49389
PE,60.56,0,HhH-GPD,HhH-GPD domain; coiled-coil,NULL; no
description,DNA glycosylase; no description,Helix-turn-,CUFF.32948.3
(1442 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g103680.1 | HhH-GPD base excision DNA repair family protei... 1240 0.0
Medtr1g061220.1 | endonuclease/exonuclease/phosphatase family pr... 993 0.0
Medtr2g008920.1 | HhH-GPD base excision DNA repair family protei... 222 2e-57
Medtr5g095880.1 | HhH-GPD base excision DNA repair family protei... 218 3e-56
Medtr1g492760.1 | HhH-GPD base excision DNA repair family protei... 189 3e-47
Medtr2g075885.1 | repressor of silencing protein, putative | LC ... 141 6e-33
Medtr2g075880.1 | HhH-GPD base excision DNA repair family protei... 129 2e-29
Medtr2g099850.1 | hypothetical protein | LC | chr2:42830539-4283... 99 2e-20
Medtr2g099900.1 | hypothetical protein | LC | chr2:42845503-4284... 89 4e-17
Medtr2g075890.1 | hypothetical protein | LC | chr2:31759719-3175... 82 3e-15
Medtr4g106380.1 | HhH-GPD base excision DNA repair family protei... 80 1e-14
Medtr4g106380.2 | HhH-GPD base excision DNA repair family protei... 69 3e-11
Medtr2g084845.1 | HhH-GPD base excision DNA repair family protei... 60 2e-08
>Medtr7g103680.1 | HhH-GPD base excision DNA repair family protein |
HC | chr7:41975017-41984483 | 20130731
Length = 1778
Score = 1240 bits (3208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 790/1543 (51%), Positives = 932/1543 (60%), Gaps = 242/1543 (15%)
Query: 5 NWNSQLNQGYTPIGQRHFPQELPLINTIHGNYQDPQGTPYFLY--NTSSQVAPPAPNMAI 62
N N + NQ Y +GQ + Q+ N I NYQDPQGTP+ Y T+SQVA P P I
Sbjct: 129 NLNPRFNQSYAFLGQHNLYQQQLFNNFICDNYQDPQGTPHLAYYNKTNSQVALP-PENNI 187
Query: 63 TAESSQVAATQLSMATGLSLEVRDQ-GGETNVPATDCNNQHNKLYDP------------- 108
T+ +QV TQ++M E RDQ E+N AT CN+ HNKLYDP
Sbjct: 188 TSNDNQVVETQINM------EQRDQRDDESNASATMCNSSHNKLYDPVVDLTSVSTPSKE 241
Query: 109 --DQNKEIGQGIDLNRTPQXXXXXXXXXXXXXXEAXXXXXXX-------XXXXXXXXXXN 159
+ NKEI IDLN PQ E+
Sbjct: 242 NKNHNKEIHHVIDLNEIPQTKPKRRKHRPKVIKESKPKKTPKPATPKPDQSKENSTQKRK 301
Query: 160 AGKGLKLDSPQTEVAGE-GDKLIPEPVKKTCRRPLNFDLVEQPMDGNSA-RRENATTHWN 217
+ + ++ EV G+ + L+ E KKTCRR L+FD+ EQP DGNSA R ENAT H+
Sbjct: 302 YARKKESNATPAEVTGQCTEPLMSESAKKTCRRSLHFDIPEQPTDGNSACREENATRHFG 361
Query: 218 REIGVQVKETQVLNSYMSLQEDSQTPSADLSNGNSLGSKPNANYVENGNKRGWLIGQDGH 277
EI ++V+ET VLN++M+LQED+Q S+ +S E G+K+
Sbjct: 362 GEISIEVQETHVLNNHMTLQEDAQASSSSRKLSSSGSQ-------EFGSKK--------- 405
Query: 278 DKLLSAAAAQSKQHDSNNSYSQLLATRLQVVGSKRKQSGAIEHTDNSSINLIGTQYNSLQ 337
+A +KQ D +G+I NL+G QYN +Q
Sbjct: 406 -----KPSATTKQAD----------------------NGSI--------NLLGAQYNQMQ 430
Query: 338 GYLPKYLVEFQNVKKKRRSEKGK---IPNTFPMTATANVQPAPCPQEDARSFTHVSSSSC 394
Y KY ++F NV+KK+RSEKGK IPNT M A +VQ C +E+ARS S+S+
Sbjct: 431 AYQSKYWLQFPNVQKKKRSEKGKFSNIPNTSSMNAAQDVQLPTCSEENARSHPDASTSNV 490
Query: 395 WTY--GSEYNPVIVPDMSTATERAIHDKPQSFECNL-SLEKRPTKRRSRVPARINDFSSL 451
WT SEY + M TE A HDK +S E NL S + RPTK+RSRV R +D++SL
Sbjct: 491 WTTASASEYETAQLLTMLKVTEIATHDKSRSLEYNLFSGQSRPTKKRSRVTTRAHDYTSL 550
Query: 452 TFVRNWDSKLTRTVKEGSSDRQTFEDAERPQTCMDALVAQMSALLTXXXXXXXXXXADPG 511
+ + N+D+KLT V GSS+RQTFEDAERPQT +DALVA+M A LT
Sbjct: 551 SKITNYDAKLTNIVNRGSSERQTFEDAERPQTGIDALVAEMRASLTKKKRSKKRSTPISS 610
Query: 512 T----SEMQQHHTFAAKNHSWAFQNSLDVACEGRRKNIHNGGTLTGRSGDQNLYREDRAM 567
T +EMQ H NSL VAC KNI LT + ++YRE R +
Sbjct: 611 TYSCLNEMQHH---------LPLHNSLGVACGESWKNIPTVDRLTQQFSHLSIYREAREL 661
Query: 568 VVYGQKAVVPYKQQNRNYKTQ----GTMVPYS----PLKKQ--RPKVDLDEETNKVWKLL 617
V+YGQ A+VPY +QN K + GT++PY P+KKQ RPKVDLDEETNKVWKLL
Sbjct: 662 VLYGQNALVPYNRQNEKRKGRVHENGTIIPYEGMFDPIKKQRPRPKVDLDEETNKVWKLL 721
Query: 618 MLDINSHGVDGTDXXXXXXXXXXRNVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVVG 677
MLDINSHGVDGTD RNVFRGRA+SFIARMHLVQGDRRFS+WKGSVVDSVVG
Sbjct: 722 MLDINSHGVDGTDEDKAKWWENERNVFRGRAESFIARMHLVQGDRRFSRWKGSVVDSVVG 781
Query: 678 VFLTQNVSDHLSSSAFMSLATRFPLKPSSNCETHDKENTSLIVNEPQVDMVEAEENGKLK 737
VFLTQNVSDHLSSSAFMSL RFPLK SS +T +E+ S+IVN P+V +VE EE KL
Sbjct: 782 VFLTQNVSDHLSSSAFMSLIARFPLKSSSMFDTCHEESASMIVNTPEVQIVEPEEYAKLD 841
Query: 738 EKILNLSACELSSMTVDVFEHSDEREVADSN--DSCRNSSSI-TLTDESNCKLLESAQRH 794
E ILN S ELSSMT D+ EHS+ERE DSN DSC + S+ +L D SNCKL E AQR+
Sbjct: 842 EIILNQSVQELSSMTKDIIEHSEERETVDSNSIDSCGTTGSLDSLKDVSNCKLSEPAQRN 901
Query: 795 TREHSPMESVCPMTGEVQENSCNGGVRREFNDLFSSQGSFITSQISGDFSIDQNPEKIS- 853
EH ME V P+TG+ QENSC+GG+R+E N LFS S +TSQ+SGDFSIDQNPEKI
Sbjct: 902 IMEHGTMEFVNPLTGKGQENSCHGGIRKESNVLFSPNCSIVTSQLSGDFSIDQNPEKIGS 961
Query: 854 -SDCNSEVEDLSSTAKYNIYHNRTSFSKLLEMAGSTMLHEVNSQRSKSTESSRDAYGQSV 912
SD N+EVED STA+YN + NRTSFSKLL MA ST LHEVNSQRS TE+ RD YGQSV
Sbjct: 962 FSDSNTEVEDRLSTAEYN-FSNRTSFSKLLGMANSTQLHEVNSQRSNPTENLRDLYGQSV 1020
Query: 913 AMNHDNLAENLEKTNFTQDFLEASTISSNEYTLKVTPDSGVLDINCPNPLQIEASSSGSS 972
AM HDNL ENLEK+N TQ LEA N + LK+TP+S V ++N NPL +EASSSGSS
Sbjct: 1021 AMRHDNLEENLEKSNVTQSSLEAIMKQFNGHNLKMTPNSEVHEVNFYNPLNVEASSSGSS 1080
Query: 973 KNTDEINTRFSFPITESESQAAVAHSQSILSQLHLQPQSD-------------------- 1012
KNT+E N P TESESQAA+ HS S+LSQ+ LQ SD
Sbjct: 1081 KNTNENNKSSGTP-TESESQAAITHSHSMLSQVPLQQHSDHQQHKVFHISGQSKDLMEKS 1139
Query: 1013 ---------------NNKVDSVPVTTLRGKQRKKEKKDNFDWDSLRITAQATAGKREKTE 1057
N+K+DS PV L+GK+R KEKKDNF+WDSLRI AQATAGKREKTE
Sbjct: 1140 KESDFGDHNYALRNENSKLDSAPVKKLKGKERGKEKKDNFNWDSLRIQAQATAGKREKTE 1199
Query: 1058 NTMDSLDWDAVRCADVKEIADAIKERGMNNMLAERIKNFLNLLVDVHGAIDLEWLRDVPP 1117
+ MDSLDW+AVR A+VKEIADAIKERGMNNMLAERI++FLNLLV+ HGAIDLEWLRDVPP
Sbjct: 1200 SNMDSLDWEAVRRANVKEIADAIKERGMNNMLAERIQSFLNLLVEKHGAIDLEWLRDVPP 1259
Query: 1118 DQAKEFLLSIKGLGLKSVECVRLLTLHQLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXX 1177
DQAKEFLLSI+GLGLKSVECVRLLTLH LAFPVDTNVGRIAVRLGWV
Sbjct: 1260 DQAKEFLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVP------------ 1307
Query: 1178 XXXXXVLESIQKYLWPRLCKLDQKTLYELHYQLITFGKVKYIFPYVIDGALLSKTLLKLN 1237
L+ + P +L LYELHYQLITFGK
Sbjct: 1308 ------LQPL-----PESLQLHLLELYELHYQLITFGK---------------------- 1334
Query: 1238 QCLQVFCTKSNPNCNSCPMRGECXXXXXXXXXXXXXXTGP---EQKSIVVTTGNNAAYQN 1294
VFCTKS PNCN+CPMRGEC GP EQK++V+TTGNNA QN
Sbjct: 1335 ----VFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKEQKNLVITTGNNATDQN 1390
Query: 1295 PSPTIQQLPLALP--------------------------------ENTNQPEDLQQTEVT 1322
PS T+ QLPL+LP EN NQ E+LQQT
Sbjct: 1391 PSTTVNQLPLSLPGLEQKNIEITTGTDATDQNSSVVINQLPLSLSENKNQTEELQQTVAI 1450
Query: 1323 GQLAAKSENYTCQXXXXXXXXXXXXDSHVS--DIEDAFYEESDEIPTIKLNMEEFASNLE 1380
QL SE CQ SHVS DIED FYEES+EIPTI L++EEF NL+
Sbjct: 1451 RQLEMNSEINNCQPIIEEPTTPEPECSHVSENDIEDFFYEESNEIPTINLDIEEFTLNLQ 1510
Query: 1381 NLMQNKMELQEGEISKALVALHPEATFIPTPKLKNVTRLRTEH 1423
N MQ MELQEGE+SKALVAL+ EA +IPT KLKNV+RLRTEH
Sbjct: 1511 NYMQENMELQEGEMSKALVALNQEAAYIPTTKLKNVSRLRTEH 1553
>Medtr1g061220.1 | endonuclease/exonuclease/phosphatase family protein
| HC | chr1:26754811-26739931 | 20130731
Length = 2841
Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1318 (48%), Positives = 773/1318 (58%), Gaps = 169/1318 (12%)
Query: 168 SPQTEVAGEGDKLIPEPVKKTCRRPLNFDLVEQPMDGNSARRENATTHWNREIGVQVKET 227
+P G + ++ EP +C+ +NFD + D + E+ T+ N VKE
Sbjct: 762 TPTKRTGGLTEPIMSEPTTISCKMSINFD--KGGRDESYMCNESLTSDQN----TLVKE- 814
Query: 228 QVLNSYMSLQEDSQTPSADLSNGNSLGSKPNANYVENGNKRGWLIGQDGHDKLLSAAAAQ 287
+L+ SL E++Q+PS L N G K NA N NKR L A A+
Sbjct: 815 -ILHYCASLSENTQSPSTCLPESNPPGEKQNA---RNENKRKGL------------ATAE 858
Query: 288 SKQHDSNNSYSQLLATRLQVVGSKRKQSGAIEHTDNSSINLIGTQYNSLQGYLPKYLVEF 347
D N S SQ+ +LQ+VG +R+ +G IEH DNSS+NLIG YN L Y K+ ++F
Sbjct: 859 ----DGNISNSQVSTIKLQMVGCEREHAGTIEHADNSSMNLIGAHYNGLASYQSKFPLQF 914
Query: 348 QNVKKKRRSEKGKIPNTFPMTA--TANVQPAPCPQEDARSFTHVSSSSCWTYGSEYNPVI 405
N++KKRR+EKGK N+ ++ T N P EDA+ + S+ + W YG YN +
Sbjct: 915 SNIQKKRRTEKGKTSNSHITSSVITENGAPLIFTPEDAQMHPYASNYNSWMYGFGYNAPV 974
Query: 406 VPDMSTATERAIHDKPQSFECNLSLEKRPTKRRSRVPARINDFSSLTFVRNWDSKLTRTV 465
P ++ E IH+ E LSL R +S+ PA +D++SLT +RN+
Sbjct: 975 FPIINEYRENYIHNTQTFDEFRLSL--RRVTEKSQFPAETSDYNSLTRIRNFIEPNYTAN 1032
Query: 466 KEGSSDRQTFEDAERPQTCMDALVAQMSALLTXXXX----XXXXXXADPGT--SEMQQHH 519
+ SD+Q DAERPQTC+D LV + A P T ++MQQ H
Sbjct: 1033 QLDFSDQQAMRDAERPQTCIDVLVEDVPVSSVKKKQNRKRSALSSSAHPNTDQNQMQQCH 1092
Query: 520 TFAAKNHSWAFQNSLDVACEGRRKNIHNGGTLTGRSGDQNLYREDRAMVVYGQKAVVPYK 579
A NH A S A GRRK +++ L + N+ +V+Y Q A+VP+
Sbjct: 1093 NVALGNHHLALGKSSGTARGGRRKKVYDVEALVKQFRQLNINAGVGDIVLYKQNALVPF- 1151
Query: 580 QQNRNYKTQGTMVPYSPLKKQRP--KVDLDEETNKVWKLLMLDINSHGVDGTDXXXXXXX 637
QG+ + P+KKQRP KVDLDEET++VWKLL+LDIN GVDGTD
Sbjct: 1152 --------QGS---FDPIKKQRPRPKVDLDEETDRVWKLLLLDINHDGVDGTDEEKAKWW 1200
Query: 638 XXXRNVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLA 697
R VFRGRADSFIARMHLVQGDRRFS+WKGSVVDSVVGVFLTQNV+DHLSSSAFMSLA
Sbjct: 1201 EEERKVFRGRADSFIARMHLVQGDRRFSRWKGSVVDSVVGVFLTQNVTDHLSSSAFMSLA 1260
Query: 698 TRFPLKPSSNCETHDKENTSLIVNEPQVDMVEAEENGKLKEKILNLSACELSSMTVDVFE 757
RFP K S D E TS VN+ QVD+VE EEN + +LN S C SSMT D+ E
Sbjct: 1261 ARFPKKSGST--ACDGEGTSQAVNKQQVDIVEPEENTECDVNLLNQSVCNQSSMTKDIIE 1318
Query: 758 HSDEREVADSNDSCR-NSSSITLTDESNCKLLESAQRHTREHSPMESVCPMTGEVQENSC 816
HS E+ V+ SNDSCR SS I+LTDESNCKL ES+Q PM M E +E SC
Sbjct: 1319 HSGEKAVS-SNDSCRITSSPISLTDESNCKLTESSQ----SSGPMV----MIEEGEEKSC 1369
Query: 817 NGGVRREFNDLFSSQGSFITSQISGDFSIDQNPEKISS--DCNSEVEDLSSTAKYNI--- 871
G +E ND+ SSQ S I+SQISG+FS DQNPEKI S D NSEVEDLSSTAKYN
Sbjct: 1370 YDGAGKELNDIVSSQSSVISSQISGEFSNDQNPEKIGSCSDSNSEVEDLSSTAKYNSVED 1429
Query: 872 ------YHNRTSFSKLLEMAGSTMLHEVNSQRSKSTESSRDAYGQSVAMNHDNLAENLEK 925
Y N SF KLLEM ST +E+ SQRSKSTE+ RD
Sbjct: 1430 LSSTAKYKNYGSFCKLLEMVSSTKFYEIESQRSKSTENMRDV------------------ 1471
Query: 926 TNFTQDFLEASTISSNEYTLKVTPDSGVLDINCPNPLQIEASSSGSSKNT--DEINTRFS 983
T LE S I S+E L++T +S D P + EASSSG KN +E+NT S
Sbjct: 1472 ---THSSLEESIIPSHECNLRLTHNSEAHD-----PFKAEASSSGILKNKHENEMNTP-S 1522
Query: 984 FPITESESQAAVAHSQSILSQLHLQPQ--------------------------------- 1010
F +S V HSQ+I SQ+H Q Q
Sbjct: 1523 FQTAKSAGLVEVTHSQTIASQVHPQEQTNHMQQNFFNSSGQTHDLIQNERYLNLGDHKDV 1582
Query: 1011 --SDNNKVDSVPVTTLRGKQRKKEKKDNFDWDSLRITAQATAGKREKTENTMDSLDWDAV 1068
S+ N++ S P+ ++ K + KE+++ FDWDSLRI AQA AGKREKTENTMDSLDWDAV
Sbjct: 1583 VRSETNEISSTPIK-VKTKSQLKEEQEQFDWDSLRIKAQAKAGKREKTENTMDSLDWDAV 1641
Query: 1069 RCADVKEIADAIKERGMNNMLAERIKNFLNLLVDVHGAIDLEWLRDVPPDQAKEFLLSIK 1128
RCADV IAD IKERGMNN LAERI+ FLN +VD HG+IDLEWLRDVPPDQAKE+LLS++
Sbjct: 1642 RCADVGVIADVIKERGMNNRLAERIQKFLNRVVDDHGSIDLEWLRDVPPDQAKEYLLSVR 1701
Query: 1129 GLGLKSVECVRLLTLHQLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQ 1188
GLGLKSVECVRLLTLH LAFPVDTNVGRIAVRLGWV VLESIQ
Sbjct: 1702 GLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLEMYPVLESIQ 1761
Query: 1189 KYLWPRLCKLDQKTLYELHYQLITFGKVKYIFPYVIDGALLSKTLLKLNQCLQVFCTKSN 1248
KYLWPRLCKLDQKTLYELHYQ+ITFGK VFCTKS
Sbjct: 1762 KYLWPRLCKLDQKTLYELHYQMITFGK--------------------------VFCTKSK 1795
Query: 1249 PNCNSCPMRGECXXXXXXXXXXXXXXTGPEQKSIVVTTGNNAAYQNPSPTIQQLPLALPE 1308
PNCN+CPMR EC GPEQ+S+V +GN +NP + QL L LPE
Sbjct: 1796 PNCNACPMRAECRHFASAFASARLALPGPEQRSMVSVSGNGVTDENPPVVMSQLHLPLPE 1855
Query: 1309 NTNQ-PEDLQQTEVTGQLAAKSENYTCQXXXXXXXXXXXXDSH--VSDIEDAFYEESDEI 1365
NTNQ E++ +TEV+GQL AKSE CQ S +SD+EDAF ++ EI
Sbjct: 1856 NTNQVVEEIPETEVSGQL-AKSEVNICQPIIEEPTTPEPECSQLELSDMEDAFIDDPCEI 1914
Query: 1366 PTIKLNMEEFASNLENLMQNKMELQEGEISKALVALHPEATFIPTPKLKNVTRLRTEH 1423
PTIKLNMEEF NL+N MQ MELQEGE+SKALVALHPEA IP PKLKNV+RLRTEH
Sbjct: 1915 PTIKLNMEEFTLNLQNYMQQNMELQEGEMSKALVALHPEAASIPGPKLKNVSRLRTEH 1972
>Medtr2g008920.1 | HhH-GPD base excision DNA repair family protein |
LC | chr2:1684746-1690610 | 20130731
Length = 731
Score = 222 bits (566), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 110/228 (48%), Positives = 141/228 (61%), Gaps = 30/228 (13%)
Query: 1033 KKDNFDWDSLRITAQATAGKREKTENTMDSLDWDAVRCADVKEIADAIKERGMNNMLAER 1092
KK W++LR + ++ + +DS+DW+AVR A V E+A+AIK RG +N++A++
Sbjct: 482 KKKRQKWEALR----KIHSRSDRHIDHVDSIDWEAVRNAKVGEVAEAIKMRGQHNIIAKK 537
Query: 1093 IKNFLNLLVDVHGAIDLEWLRDVPPDQAKEFLLSIKGLGLKSVECVRLLTLHQLAFPVDT 1152
I+ LN ++ HG DLEWL+ +PP++AKE+LL+I GLGLKSVEC+RLLTL ++FPVD
Sbjct: 538 IQLALNKFLEHHGTTDLEWLKYIPPNEAKEYLLNIFGLGLKSVECLRLLTLQHISFPVDV 597
Query: 1153 NVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQKTLYELHYQLIT 1212
NVGRI VRLGWV IQ+YLWPRLCKLD TLYELHYQLIT
Sbjct: 598 NVGRIVVRLGWVPLQPLPESIQIHNLEQFPDPIKIQQYLWPRLCKLDHHTLYELHYQLIT 657
Query: 1213 FGKVKYIFPYVIDGALLSKTLLKLNQCLQVFCTKSNPNCNSCPMRGEC 1260
FGK VFCTK NPNCN+CPM+ C
Sbjct: 658 FGK--------------------------VFCTKRNPNCNACPMKDNC 679
Score = 118 bits (296), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/161 (47%), Positives = 98/161 (60%), Gaps = 14/161 (8%)
Query: 586 KTQGTMVPYS-PLKKQRPKVDLDEETNKVWKLLMLDINSHGVDGTDXXXXXXXXXXRNVF 644
K G +V Y PL K V DEET +VW LL+ + N H D D R +
Sbjct: 291 KKSGELVLYERPLLK--VNVKFDEETLRVWNLLVAE-NKH--DEKDEHKRRYWEEIRKAY 345
Query: 645 RGRADSFIARMHLVQGDRRFSQWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLATRFPLKP 704
+SF+ R+H VQGDRRF WKGSV+DS+ GVFLTQNVSDHLSSSAFMSLA RFP+K
Sbjct: 346 HEAVESFLTRVHNVQGDRRFLPWKGSVLDSIGGVFLTQNVSDHLSSSAFMSLAARFPVK- 404
Query: 705 SSNCETHDKENTSLIVNEPQVD-MVEAEENGKLKE--KILN 742
S +CE ++ ++I ++P+ D VE E K E K++N
Sbjct: 405 SVSCE----QSNNMIFSDPKSDKKVEEMEAQKANESSKVVN 441
>Medtr5g095880.1 | HhH-GPD base excision DNA repair family protein |
HC | chr5:41918470-41923776 | 20130731
Length = 718
Score = 218 bits (556), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 138/222 (62%), Gaps = 30/222 (13%)
Query: 1039 WDSLRITAQATAGKREKTENTMDSLDWDAVRCADVKEIADAIKERGMNNMLAERIKNFLN 1098
W++LR K ++ + DS+DW+AVR A+V E+A AIK+RG N++A +I+ L
Sbjct: 193 WETLR----KIHSKSDQHIDHADSVDWEAVRDANVNEVAAAIKKRGQQNIIAYKIQVALK 248
Query: 1099 LLVDVHGAIDLEWLRDVPPDQAKEFLLSIKGLGLKSVECVRLLTLHQLAFPVDTNVGRIA 1158
+ HG+++LEWL+D+PP++AKE+ LSI GLGLKSVEC+RLLTL ++FPVD NVGRI
Sbjct: 249 GFMVNHGSMNLEWLKDIPPNEAKEYFLSIFGLGLKSVECLRLLTLQHISFPVDVNVGRIV 308
Query: 1159 VRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWPRLCKLDQKTLYELHYQLITFGKVKY 1218
VRLGWV IQ+YLWPRLCKLD +TLYELHYQLITFGK
Sbjct: 309 VRLGWVPLQPLPESIQIHNLEKFPDPIKIQQYLWPRLCKLDHQTLYELHYQLITFGK--- 365
Query: 1219 IFPYVIDGALLSKTLLKLNQCLQVFCTKSNPNCNSCPMRGEC 1260
VFCTK NPNCN+CPM+ C
Sbjct: 366 -----------------------VFCTKRNPNCNACPMKDGC 384
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 78/122 (63%), Gaps = 12/122 (9%)
Query: 586 KTQGTMVPYSPLKKQRP----KVDLDEETNKVWKLLMLDINSHGVDGTDXXXXXXXXXXR 641
K G +V Y+ RP +V LDEET +VW LL+++ N H + D R
Sbjct: 12 KKSGELVLYN-----RPSAEVEVMLDEETLRVWNLLVVE-NKH--EENDEHKRRYWEMIR 63
Query: 642 NVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLATRFP 701
++ SF+ ++H VQGDRRF WKGSV+DSV GVFLTQNVSDHLSSSAFMSLA RFP
Sbjct: 64 KLYHKMVISFLDQVHTVQGDRRFLPWKGSVLDSVGGVFLTQNVSDHLSSSAFMSLAARFP 123
Query: 702 LK 703
+K
Sbjct: 124 VK 125
>Medtr1g492760.1 | HhH-GPD base excision DNA repair family protein |
HC | chr1:41588190-41596220 | 20130731
Length = 1359
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 116/176 (65%), Gaps = 18/176 (10%)
Query: 572 QKAVVPYKQQNRNYKTQGTMVPYSPLK-----KQRPKVDLDEETNKVWKLLMLDINSHGV 626
QKA+VPYK G++VPY + K RPKVDLD ET + WKLLM S +
Sbjct: 727 QKALVPYK-------GDGSIVPYQEFEFGKKHKPRPKVDLDPETERTWKLLMGIEGSEDL 779
Query: 627 DGTDXXXXXXXXXXRNVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVVGVFLTQNVSD 686
+GTD RNVFRGRADSFIARMHLVQGDRRFS+WKGSVVDSV+GVFLTQNVSD
Sbjct: 780 EGTDKKKEKWWEEERNVFRGRADSFIARMHLVQGDRRFSKWKGSVVDSVIGVFLTQNVSD 839
Query: 687 HLSSSAFMSLATRFPLKPSSNCETHDKENTSLIVNEPQ------VDMVEAEENGKL 736
HLSSSAFMSLA RFPLK S+ T+D T V EPQ VD + + E G L
Sbjct: 840 HLSSSAFMSLAARFPLKSKSSQRTYDIVVTDPSVEEPQHCIVNPVDSIASYERGTL 895
Score = 181 bits (458), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 85/130 (65%), Positives = 100/130 (76%)
Query: 1021 VTTLRGKQRKKEKKDNFDWDSLRITAQATAGKREKTENTMDSLDWDAVRCADVKEIADAI 1080
V R + + KK DWD+LR K E++ +TMDSLD++AVRCA VKEI+DAI
Sbjct: 1227 VRKARKTKPEANKKPAEDWDNLRKDVHENGVKIERSVDTMDSLDYEAVRCASVKEISDAI 1286
Query: 1081 KERGMNNMLAERIKNFLNLLVDVHGAIDLEWLRDVPPDQAKEFLLSIKGLGLKSVECVRL 1140
KERGMNNMLAERIK FLN LV HG+IDLEWLR PPD+ K++LLS++GLGLKSVECVRL
Sbjct: 1287 KERGMNNMLAERIKEFLNRLVREHGSIDLEWLRHAPPDKVKDYLLSMRGLGLKSVECVRL 1346
Query: 1141 LTLHQLAFPV 1150
LTLH LAFPV
Sbjct: 1347 LTLHHLAFPV 1356
>Medtr2g075885.1 | repressor of silencing protein, putative | LC |
chr2:31758368-31757294 | 20130731
Length = 184
Score = 141 bits (355), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 77/95 (81%)
Query: 1027 KQRKKEKKDNFDWDSLRITAQATAGKREKTENTMDSLDWDAVRCADVKEIADAIKERGMN 1086
K++ K+ FD DSLR+ AQA AGKREKTENTMDS+DWD VRC D K+IADAIKERG+N
Sbjct: 90 KRKSNAGKEQFDKDSLRLNAQAKAGKREKTENTMDSVDWDDVRCVDCKKIADAIKERGIN 149
Query: 1087 NMLAERIKNFLNLLVDVHGAIDLEWLRDVPPDQAK 1121
N LA+ I+NFL LVD HG IDLEWLRDVP DQAK
Sbjct: 150 NKLAKHIQNFLIRLVDDHGRIDLEWLRDVPNDQAK 184
>Medtr2g075880.1 | HhH-GPD base excision DNA repair family protein |
LC | chr2:31756523-31753313 | 20130731
Length = 459
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 77/123 (62%), Gaps = 19/123 (15%)
Query: 1074 KEIADAIKERGMNNMLAERIKNFLNLLVDVHGAIDLEWLRDVPPDQAKEFLLSIKGLGLK 1133
K+I DAIKERGMNN LA+R++NFL LVD HG+IDLEWLRDVPPDQ KE+L SI
Sbjct: 320 KKIVDAIKERGMNNKLAKRVQNFLIRLVDDHGSIDLEWLRDVPPDQTKEYLSSI------ 373
Query: 1134 SVECVRLLTLHQLAFPVDTNVGRIAVRLGWVXXXXXXXXXXXXXXXXXXVLESIQKYLWP 1193
AFP+DTNVGRIAVRLGWV ++ SIQK+LW
Sbjct: 374 -------------AFPIDTNVGRIAVRLGWVPLHPLPESLQLHLLELYPLVNSIQKHLWA 420
Query: 1194 RLC 1196
RLC
Sbjct: 421 RLC 423
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 77/109 (70%), Gaps = 7/109 (6%)
Query: 642 NVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLATRFP 701
+ RGRA+SFIARMH +QG +FS+WKGS+VD VVGVFLTQ+VSDHLS SAFMSLA +FP
Sbjct: 234 KLLRGRAESFIARMHPIQGYIQFSRWKGSIVDLVVGVFLTQHVSDHLSCSAFMSLAAQFP 293
Query: 702 LKPSSNCETHDKENTSLIVNEPQ------VDMV-EAEENGKLKEKILNL 743
K S C+ +D E TSLIVN+ VD + E N KL +++ N
Sbjct: 294 KKSGSTCKVYDGEGTSLIVNKKTSIAKKIVDAIKERGMNNKLAKRVQNF 342
>Medtr2g099850.1 | hypothetical protein | LC |
chr2:42830539-42831674 | 20130731
Length = 219
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 83/164 (50%), Gaps = 42/164 (25%)
Query: 467 EGSSDRQTFEDAERPQTCMDALVAQMSALLTXXXXXXXXXXADPGTSEMQQHHTFAAKNH 526
E SD+ TFED ERPQ +D LVA+M A L E+ Q + +
Sbjct: 60 EQCSDK-TFEDQERPQPAIDVLVAKMRASLAKKKRV---------KREVLQ----SVQRI 105
Query: 527 SWAFQNSLDVACEGRRKNIHNGGTLTGRSGDQNLYREDRAMVVYGQKAVVPYKQQNRNYK 586
W KNIH TLT + N+YRE R +V+Y Q A+VPY ++N +K
Sbjct: 106 LWW-------------KNIHTMDTLTQQFRHLNIYREARKLVLYEQNALVPYNRENEKHK 152
Query: 587 TQGTMVPYSPLKKQRPKVDLDEETNKVWKLLMLDINSHGVDGTD 630
+ KV+LDEET KVWKLLMLDINS GVDGTD
Sbjct: 153 S---------------KVNLDEETYKVWKLLMLDINSEGVDGTD 181
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 35/49 (71%), Gaps = 3/49 (6%)
Query: 671 VVDSVVGVFLTQNVSDHLSSSAFMSLATRFPLKPSSNCETHDKENTSLI 719
+VDSVV F + NVSDHLSSSAFMSL RFPLK S+C H++ L+
Sbjct: 1 MVDSVVE-FFSLNVSDHLSSSAFMSLVARFPLK--SSCRGHERRTGKLV 46
>Medtr2g099900.1 | hypothetical protein | LC | chr2:42845503-42846020
| 20130731
Length = 137
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/174 (40%), Positives = 90/174 (51%), Gaps = 39/174 (22%)
Query: 947 VTPDSGVLDINCPNPLQIEASSSGSSKNTDEINTRFSFPITESESQAAVAHSQSILSQLH 1006
+TP+S VL+ NC N + ++ASSSGSSKN E F +++ Q SIL+ +
Sbjct: 1 MTPNSKVLEANCYNSVIVKASSSGSSKNKLEF-----FNSLKAKLQL------SILTASY 49
Query: 1007 LQPQSDNNKVDSVPVTTLRGKQRKKEKKDNFDWDSLRITAQAT-AGKREKTENTMDSLDW 1065
P+S L G K I AQA AGKREKTE TMD L W
Sbjct: 50 --PKS------------LFGSMFK------------NIHAQAAKAGKREKTEMTMDFLYW 83
Query: 1066 DAVRCADVKEIADAIKERGMNNMLAERIK-NFLNLLVDVHGAIDLEWLRDVPPD 1118
+A+ A+V EIA+ K+ L + ++LNLLVD H A DL WLRDV PD
Sbjct: 84 EAMSRANVNEIAEHSKKEAWITCLQNLFRVSYLNLLVDAHRATDLVWLRDVSPD 137
>Medtr2g075890.1 | hypothetical protein | LC |
chr2:31759719-31758943 | 20130731
Length = 192
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 3/106 (2%)
Query: 574 AVVPYKQQNRNYKTQGTMVPYSPLKKQRPKVDLDEETNKVWKLLMLDINSHGVDGTDXXX 633
A++ + +QN QG+ P+KKQ VDLDEETNKV KLL+ +N GVDGT+
Sbjct: 18 AMMSWLEQNALVLFQGSS---DPVKKQHANVDLDEETNKVRKLLLSYLNPDGVDGTNEDK 74
Query: 634 XXXXXXXRNVFRGRADSFIARMHLVQGDRRFSQWKGSVVDSVVGVF 679
R +FRGR++SFIARMH +QG +FS WKGSVVDSVVGVF
Sbjct: 75 AKWWEEERKLFRGRSESFIARMHPIQGYIQFSIWKGSVVDSVVGVF 120
>Medtr4g106380.1 | HhH-GPD base excision DNA repair family protein |
HC | chr4:44120207-44117420 | 20130731
Length = 280
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 61/100 (61%)
Query: 1065 WDAVRCADVKEIADAIKERGMNNMLAERIKNFLNLLVDVHGAIDLEWLRDVPPDQAKEFL 1124
W+ V A+ KE+ +AI+ G+ A+ IKN L+ L++ G + LE+LRD+ D+ K L
Sbjct: 115 WEHVHGAESKELENAIRCGGLAPTKAKCIKNLLSCLLERKGKMCLEYLRDLSVDEVKAEL 174
Query: 1125 LSIKGLGLKSVECVRLLTLHQLAFPVDTNVGRIAVRLGWV 1164
KG+G K+V CV + L FPVDT++ IA +GWV
Sbjct: 175 SLFKGIGPKTVSCVLMFNLQLDDFPVDTHIFEIAKTMGWV 214
>Medtr4g106380.2 | HhH-GPD base excision DNA repair family protein |
HC | chr4:44120207-44117420 | 20130731
Length = 253
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/90 (41%), Positives = 55/90 (61%)
Query: 1065 WDAVRCADVKEIADAIKERGMNNMLAERIKNFLNLLVDVHGAIDLEWLRDVPPDQAKEFL 1124
W+ V A+ KE+ +AI+ G+ A+ IKN L+ L++ G + LE+LRD+ D+ K L
Sbjct: 115 WEHVHGAESKELENAIRCGGLAPTKAKCIKNLLSCLLERKGKMCLEYLRDLSVDEVKAEL 174
Query: 1125 LSIKGLGLKSVECVRLLTLHQLAFPVDTNV 1154
KG+G K+V CV + L FPVDT+V
Sbjct: 175 SLFKGIGPKTVSCVLMFNLQLDDFPVDTHV 204
>Medtr2g084845.1 | HhH-GPD base excision DNA repair family protein,
putative | LC | chr2:35999520-35999973 | 20130731
Length = 124
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 663 RFSQWKGSVVDSVVGVFLTQNVSDHLSSSAFMSLATRFPLKPS----SNCETHDKENTSL 718
RF WKGS +D VVGV LTQ+V D SS AFMSLA FP+KP+ SN
Sbjct: 2 RFLPWKGSALDFVVGVCLTQSVRDSSSSKAFMSLAANFPIKPARREQSNNMDFSNSKVDT 61
Query: 719 IVNEPQVDMVEAEE 732
+N+ V+ EAE+
Sbjct: 62 KMNDINVEEFEAEK 75