Miyakogusa Predicted Gene

Lj1g3v4695470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4695470.1 Non Characterized Hit- tr|I1HFP0|I1HFP0_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.52,1e-18,ZINC_FINGER_C2H2_2,Zinc finger, C2H2;
ZINC_FINGER_C2H2_1,Zinc finger, C2H2; no description,Zinc
fing,CUFF.32946.1
         (315 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g084815.2 | histone deacetylase 2a, putative | HC | chr2:3...   125   5e-29
Medtr2g084815.4 | histone deacetylase 2a, putative | HC | chr2:3...   124   1e-28
Medtr2g084815.3 | histone deacetylase 2a, putative | HC | chr2:3...   120   2e-27
Medtr2g084815.1 | histone deacetylase 2a, putative | HC | chr2:3...   111   9e-25
Medtr4g055440.1 | histone deacetylase HDT2, putative | HC | chr4...   104   1e-22
Medtr4g055450.1 | histone deacetylase, putative | HC | chr4:2020...    91   2e-18

>Medtr2g084815.2 | histone deacetylase 2a, putative | HC |
           chr2:35979101-35982483 | 20130731
          Length = 302

 Score =  125 bits (314), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 82/130 (63%), Gaps = 4/130 (3%)

Query: 1   MEFWGVEVKSGESLKVDPEDDKI--VHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGT 58
           MEFWG EVK GE++K+DP D +   +H+S   LG+  KDK +E+V +Y+K G+QKL LGT
Sbjct: 1   MEFWGAEVKVGETIKIDPYDLEAAAIHISQVALGEAKKDKPNESVVIYLKVGEQKLVLGT 60

Query: 59  LSADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKAESQAVXXXXXXXXXXXXXXXIPI 118
           L+ DK PQIS D++ EKEFELSHN K  SV F G+KA  +                 IP+
Sbjct: 61  LTKDKIPQISLDIVLEKEFELSHNSKAASVHFCGYKAYYEDNDDSEEEGETDSEDEDIPL 120

Query: 119 SVS--NGKPE 126
             +  NGKPE
Sbjct: 121 ITTEQNGKPE 130



 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 219 KKAEGSKKRVLDSPKNTPVPVKKAKFVTPQKTDSKNVAHVATPYPKQAGKASASTKQPAK 278
           KK +  KKR  +S   TP+  KK+K  TP+KTD K   H ATP+PK+ GK   S      
Sbjct: 212 KKVDQGKKRPNESASKTPISSKKSKNATPEKTDGKKAGHTATPHPKKGGKTPNSD----- 266

Query: 279 PQTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSA 313
            +TPKSGG  SC  C+++F +E  L  H+KAKH A
Sbjct: 267 AKTPKSGGGLSCSSCSKTFNSETGLTQHSKAKHGA 301


>Medtr2g084815.4 | histone deacetylase 2a, putative | HC |
           chr2:35979103-35982463 | 20130731
          Length = 247

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/130 (48%), Positives = 82/130 (63%), Gaps = 4/130 (3%)

Query: 1   MEFWGVEVKSGESLKVDPEDDKI--VHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGT 58
           MEFWG EVK GE++K+DP D +   +H+S   LG+  KDK +E+V +Y+K G+QKL LGT
Sbjct: 1   MEFWGAEVKVGETIKIDPYDLEAAAIHISQVALGEAKKDKPNESVVIYLKVGEQKLVLGT 60

Query: 59  LSADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKAESQAVXXXXXXXXXXXXXXXIPI 118
           L+ DK PQIS D++ EKEFELSHN K  SV F G+KA  +                 IP+
Sbjct: 61  LTKDKIPQISLDIVLEKEFELSHNSKAASVHFCGYKAYYEDNDDSEEEGETDSEDEDIPL 120

Query: 119 SVS--NGKPE 126
             +  NGKPE
Sbjct: 121 ITTEQNGKPE 130


>Medtr2g084815.3 | histone deacetylase 2a, putative | HC |
           chr2:35979128-35982308 | 20130731
          Length = 243

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/148 (45%), Positives = 87/148 (58%), Gaps = 12/148 (8%)

Query: 1   MEFWGVEVKSGESLKVDPEDDKI--VHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGT 58
           MEFWG EVK GE++K+DP D +   +H+S   LG+  KDK +E+V +Y+K G+QKL LGT
Sbjct: 1   MEFWGAEVKVGETIKIDPYDLEAAAIHISQVALGEAKKDKPNESVVIYLKVGEQKLVLGT 60

Query: 59  LSADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKAESQAVXXXXXXXXXXXXXXXIPI 118
           L+ DK PQIS D++ EKEFELSHN K  SV F G+KA  +                 IP+
Sbjct: 61  LTKDKIPQISLDIVLEKEFELSHNSKAASVHFCGYKAYYEDNDDSEEEGETDSEDEDIPL 120

Query: 119 SVS--NGKPEIEVKNSAKPNANEAKQKE 144
             +  NGKPE        P A E K  E
Sbjct: 121 ITTEQNGKPE--------PKAEELKVSE 140


>Medtr2g084815.1 | histone deacetylase 2a, putative | HC |
          chr2:35979205-35982051 | 20130731
          Length = 279

 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 50/86 (58%), Positives = 65/86 (75%), Gaps = 2/86 (2%)

Query: 1  MEFWGVEVKSGESLKVDPEDDKI--VHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGT 58
          MEFWG EVK GE++K+DP D +   +H+S   LG+  KDK +E+V +Y+K G+QKL LGT
Sbjct: 1  MEFWGAEVKVGETIKIDPYDLEAAAIHISQVALGEAKKDKPNESVVIYLKVGEQKLVLGT 60

Query: 59 LSADKYPQISYDLIFEKEFELSHNWK 84
          L+ DK PQIS D++ EKEFELSHN K
Sbjct: 61 LTKDKIPQISLDIVLEKEFELSHNSK 86



 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 5/95 (5%)

Query: 219 KKAEGSKKRVLDSPKNTPVPVKKAKFVTPQKTDSKNVAHVATPYPKQAGKASASTKQPAK 278
           KK +  KKR  +S   TP+  KK+K  TP+KTD K   H ATP+PK+ GK   S      
Sbjct: 189 KKVDQGKKRPNESASKTPISSKKSKNATPEKTDGKKAGHTATPHPKKGGKTPNSD----- 243

Query: 279 PQTPKSGGEYSCKPCNRSFKTEDALGSHNKAKHSA 313
            +TPKSGG  SC  C+++F +E  L  H+KAKH A
Sbjct: 244 AKTPKSGGGLSCSSCSKTFNSETGLTQHSKAKHGA 278


>Medtr4g055440.1 | histone deacetylase HDT2, putative | HC |
           chr4:20198703-20202553 | 20130731
          Length = 267

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/96 (47%), Positives = 66/96 (68%), Gaps = 2/96 (2%)

Query: 1   MEFWGVEVKSGESLKVDPEDD--KIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGT 58
           MEFWGVEVK+G+S+KVDP D     +H+S   LG+  K + SE+V +Y+K  D K  +GT
Sbjct: 5   MEFWGVEVKAGQSVKVDPNDQCTGYIHISQVALGEGKKGEASESVVLYLKVADMKFVIGT 64

Query: 59  LSADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFK 94
           L+ D +PQ + +++ + E ELSHN K  SV F+G+K
Sbjct: 65  LTKDSFPQTTLNIVLDGESELSHNSKGASVHFSGYK 100



 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 42/68 (61%), Gaps = 6/68 (8%)

Query: 224 SKKRVLDSPKNTPVPVKKAKFVTPQKTDSKNVAHVATPYP-KQAGKA---SASTKQPA-- 277
           +KKR  ++   TPVP KKAK  TP+KTD K   H+ATP+P K+ GK    +A  + P   
Sbjct: 189 NKKRTNETGSQTPVPTKKAKDATPEKTDGKKSVHIATPHPMKKGGKTPQNAAKDQSPISK 248

Query: 278 KPQTPKSG 285
           KP T KSG
Sbjct: 249 KPATTKSG 256


>Medtr4g055450.1 | histone deacetylase, putative | HC |
          chr4:20204358-20207970 | 20130731
          Length = 360

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 60/96 (62%), Gaps = 14/96 (14%)

Query: 2  EFWGVEVKSGESLKVDPED--DKIVHLSMACLGDVSKDKGSEAVSVYVKFGDQKLALGTL 59
          EFWGVEVK G+S+KVDP D  +  +H+S   LG+V KDK             + L LGTL
Sbjct: 6  EFWGVEVKVGQSVKVDPNDLCEGYIHISQVALGEVKKDKA------------KSLFLGTL 53

Query: 60 SADKYPQISYDLIFEKEFELSHNWKHGSVFFTGFKA 95
            D  PQI+ D+  + E ELSHN K+ +V+F+G+KA
Sbjct: 54 IKDTIPQIAMDIFLDDESELSHNSKNATVYFSGYKA 89