Miyakogusa Predicted Gene

Lj1g3v4694450.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4694450.1 Non Characterized Hit- tr|I3SLP5|I3SLP5_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.06,0,zinc
finger,Zinc finger, CCCH-type; RNA recognition motif,RNA recognition
motif domain, eukaryote; U,CUFF.32961.1
         (318 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g103630.1 | splicing factor U2af small subunit A-like prot...   345   4e-95
Medtr2g084715.2 | splicing factor U2af small subunit A-like prot...   328   5e-90
Medtr2g084715.1 | splicing factor U2af small subunit A-like prot...   328   5e-90
Medtr2g084715.3 | splicing factor U2af small subunit A-like prot...   328   5e-90
Medtr1g035130.6 | splicing factor U2af small subunit A-like prot...   297   1e-80
Medtr1g035130.3 | splicing factor U2af small subunit A-like prot...   297   1e-80
Medtr1g035130.1 | splicing factor U2af small subunit A-like prot...   297   1e-80
Medtr1g035130.4 | splicing factor U2af small subunit A-like prot...   297   1e-80
Medtr1g035130.2 | splicing factor U2af small subunit A-like prot...   297   1e-80
Medtr1g035130.5 | splicing factor U2af small subunit A-like prot...   297   1e-80
Medtr2g005450.1 | zinc finger CCCH domain protein, putative | HC...   126   2e-29

>Medtr7g103630.1 | splicing factor U2af small subunit A-like protein
           | HC | chr7:41947426-41950345 | 20130731
          Length = 327

 Score =  345 bits (885), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 166/199 (83%), Positives = 168/199 (84%), Gaps = 8/199 (4%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60

Query: 61  IITXXXXXXXXXXXXXXX--------XXXXXFDDFYEDLFQELSKYGQIQSLNICDNLAD 112
            I                             FDDFYEDLF+ELSKYGQIQSLNICDNLAD
Sbjct: 61  FINPTPNQPQQPQPPQPPQPESLDPDKLQEHFDDFYEDLFEELSKYGQIQSLNICDNLAD 120

Query: 113 HMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGG 172
           HMVGNVYVQYKEEDHAANALMNLTGRFYSGRPII DFSPVTDFREATCRQYEENVCNRGG
Sbjct: 121 HMVGNVYVQYKEEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGG 180

Query: 173 YCNFMHLKKISRDLRRRLF 191
           YCNFMHLKKISRDLR+RLF
Sbjct: 181 YCNFMHLKKISRDLRKRLF 199



 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/63 (65%), Positives = 47/63 (74%), Gaps = 7/63 (11%)

Query: 263 AGRDRSP-----VRESSAERRAKIEQWNREKEQDDTGPKNNTS-DDYDELA-QNGSDSGN 315
            GRDRSP      RESS ERRA+IEQWNREKE  D+G K+N S +DY+E   +NGSDSGN
Sbjct: 265 VGRDRSPNPVRGERESSVERRARIEQWNREKEVGDSGNKDNKSNNDYEEAGLKNGSDSGN 324

Query: 316 HQI 318
           HQI
Sbjct: 325 HQI 327


>Medtr2g084715.2 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927010-35930737 | 20130731
          Length = 324

 Score =  328 bits (840), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 196/307 (63%), Gaps = 18/307 (5%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPT++LSNMYQRPDM   
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDM--- 57

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
            IT                    F++FYEDLF ELSKYG I+SLN+CDNLADHMVGNVYV
Sbjct: 58  -ITPGVDVHGQPIDPRKIQDH--FEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
           Q++EE+HA NA+ NLTGRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMHLK
Sbjct: 115 QFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLK 174

Query: 181 KISRDLRRRLFXXXXXXXXXXXXXXXXXXXXXXXXXXYEERPQXXXXXX-----XXXXXX 235
           +ISR+LRR+LF                          YEERP                  
Sbjct: 175 RISRELRRQLF------GKRHERHSRSRSRSPYRHRSYEERPHRSRSSKYDDRDRDRDYH 228

Query: 236 XXXXXXXXXXXXXXXXXXXXXXXXXXXAGR-DRSPVRESSAERRAKIEQWNREKEQDDTG 294
                                       GR +RSPVR+ S ERRA+IEQWNRE+E+ +  
Sbjct: 229 HDSDSRRRRTSSPGRRRGRSPSRSRSPVGRRNRSPVRDGSEERRARIEQWNREREEKEPA 288

Query: 295 PKNNTSD 301
            K NT +
Sbjct: 289 SKVNTEE 295


>Medtr2g084715.1 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35929938 | 20130731
          Length = 324

 Score =  328 bits (840), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 196/307 (63%), Gaps = 18/307 (5%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPT++LSNMYQRPDM   
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDM--- 57

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
            IT                    F++FYEDLF ELSKYG I+SLN+CDNLADHMVGNVYV
Sbjct: 58  -ITPGVDVHGQPIDPRKIQDH--FEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
           Q++EE+HA NA+ NLTGRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMHLK
Sbjct: 115 QFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLK 174

Query: 181 KISRDLRRRLFXXXXXXXXXXXXXXXXXXXXXXXXXXYEERPQXXXXXX-----XXXXXX 235
           +ISR+LRR+LF                          YEERP                  
Sbjct: 175 RISRELRRQLF------GKRHERHSRSRSRSPYRHRSYEERPHRSRSSKYDDRDRDRDYH 228

Query: 236 XXXXXXXXXXXXXXXXXXXXXXXXXXXAGR-DRSPVRESSAERRAKIEQWNREKEQDDTG 294
                                       GR +RSPVR+ S ERRA+IEQWNRE+E+ +  
Sbjct: 229 HDSDSRRRRTSSPGRRRGRSPSRSRSPVGRRNRSPVRDGSEERRARIEQWNREREEKEPA 288

Query: 295 PKNNTSD 301
            K NT +
Sbjct: 289 SKVNTEE 295


>Medtr2g084715.3 | splicing factor U2af small subunit A-like protein
           | HC | chr2:35927030-35930729 | 20130731
          Length = 324

 Score =  328 bits (840), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 174/307 (56%), Positives = 196/307 (63%), Gaps = 18/307 (5%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKP+ISPT++LSNMYQRPDM   
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTILLSNMYQRPDM--- 57

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
            IT                    F++FYEDLF ELSKYG I+SLN+CDNLADHMVGNVYV
Sbjct: 58  -ITPGVDVHGQPIDPRKIQDH--FEEFYEDLFDELSKYGDIESLNVCDNLADHMVGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
           Q++EE+HA NA+ NLTGRFY+GRPII DFSPVTDFREATCRQYEEN CNRGGYCNFMHLK
Sbjct: 115 QFREEEHAGNAVKNLTGRFYAGRPIIVDFSPVTDFREATCRQYEENTCNRGGYCNFMHLK 174

Query: 181 KISRDLRRRLFXXXXXXXXXXXXXXXXXXXXXXXXXXYEERPQXXXXXX-----XXXXXX 235
           +ISR+LRR+LF                          YEERP                  
Sbjct: 175 RISRELRRQLF------GKRHERHSRSRSRSPYRHRSYEERPHRSRSSKYDDRDRDRDYH 228

Query: 236 XXXXXXXXXXXXXXXXXXXXXXXXXXXAGR-DRSPVRESSAERRAKIEQWNREKEQDDTG 294
                                       GR +RSPVR+ S ERRA+IEQWNRE+E+ +  
Sbjct: 229 HDSDSRRRRTSSPGRRRGRSPSRSRSPVGRRNRSPVRDGSEERRARIEQWNREREEKEPA 288

Query: 295 PKNNTSD 301
            K NT +
Sbjct: 289 SKVNTEE 295


>Medtr1g035130.6 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 157/191 (82%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPD    
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPD---- 56

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
           IIT                    F+DFYED+F ELSK+G +++LN+CDNLADHM+GNVYV
Sbjct: 57  IITPGVDPNGQPIDPRQIQQH--FEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
            +KEEDHAA AL +L GRFY GRPI+ADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 LFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
           KI R+LRR+LF
Sbjct: 175 KIGRELRRKLF 185


>Medtr1g035130.3 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643111-12639099 | 20130731
          Length = 279

 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 157/191 (82%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPD    
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPD---- 56

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
           IIT                    F+DFYED+F ELSK+G +++LN+CDNLADHM+GNVYV
Sbjct: 57  IITPGVDPNGQPIDPRQIQQH--FEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
            +KEEDHAA AL +L GRFY GRPI+ADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 LFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
           KI R+LRR+LF
Sbjct: 175 KIGRELRRKLF 185


>Medtr1g035130.1 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643125-12639099 | 20130731
          Length = 279

 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 157/191 (82%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPD    
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPD---- 56

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
           IIT                    F+DFYED+F ELSK+G +++LN+CDNLADHM+GNVYV
Sbjct: 57  IITPGVDPNGQPIDPRQIQQH--FEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
            +KEEDHAA AL +L GRFY GRPI+ADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 LFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
           KI R+LRR+LF
Sbjct: 175 KIGRELRRKLF 185


>Medtr1g035130.4 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639099 | 20130731
          Length = 279

 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 157/191 (82%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPD    
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPD---- 56

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
           IIT                    F+DFYED+F ELSK+G +++LN+CDNLADHM+GNVYV
Sbjct: 57  IITPGVDPNGQPIDPRQIQQH--FEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
            +KEEDHAA AL +L GRFY GRPI+ADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 LFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
           KI R+LRR+LF
Sbjct: 175 KIGRELRRKLF 185


>Medtr1g035130.2 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12639591 | 20130731
          Length = 279

 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 157/191 (82%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPD    
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPD---- 56

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
           IIT                    F+DFYED+F ELSK+G +++LN+CDNLADHM+GNVYV
Sbjct: 57  IITPGVDPNGQPIDPRQIQQH--FEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
            +KEEDHAA AL +L GRFY GRPI+ADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 LFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
           KI R+LRR+LF
Sbjct: 175 KIGRELRRKLF 185


>Medtr1g035130.5 | splicing factor U2af small subunit A-like protein
           | HC | chr1:12643110-12641860 | 20130731
          Length = 279

 Score =  297 bits (760), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/191 (73%), Positives = 157/191 (82%), Gaps = 6/191 (3%)

Query: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLN 60
           MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +PTISPTL+LSNMYQRPD    
Sbjct: 1   MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPD---- 56

Query: 61  IITXXXXXXXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYV 120
           IIT                    F+DFYED+F ELSK+G +++LN+CDNLADHM+GNVYV
Sbjct: 57  IITPGVDPNGQPIDPRQIQQH--FEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYV 114

Query: 121 QYKEEDHAANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEENVCNRGGYCNFMHLK 180
            +KEEDHAA AL +L GRFY GRPI+ADFSPVTDFREATCRQYEEN CNRGGYCNFMH+K
Sbjct: 115 LFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVK 174

Query: 181 KISRDLRRRLF 191
           KI R+LRR+LF
Sbjct: 175 KIGRELRRKLF 185


>Medtr2g005450.1 | zinc finger CCCH domain protein, putative | HC |
           chr2:162220-168024 | 20130731
          Length = 827

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/173 (36%), Positives = 95/173 (54%), Gaps = 11/173 (6%)

Query: 9   FGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNLNIITXXXXX 68
           FGTE D+ +CPF+ K  ACR GDRCSR+H  P  S TL++ NMY  P +           
Sbjct: 184 FGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAW--------E 235

Query: 69  XXXXXXXXXXXXXXXFDDFYEDLFQELSKYGQIQSLNICDNLADHMVGNVYVQYKEEDHA 128
                          F++FYED+  E  K+G+I +  +C N + H+ GNVYVQYK  D A
Sbjct: 236 QDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSA 295

Query: 129 ANALMNLTGRFYSGRPIIADFSPVTDFREATCRQYEEN---VCNRGGYCNFMH 178
             A  ++ GR+++G+ +   F  +T ++ A C +Y ++    C+ G  CNF+H
Sbjct: 296 LLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIH 348