Miyakogusa Predicted Gene
- Lj1g3v4694420.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4694420.1 tr|F4K3N3|F4K3N3_ARATH Small RNA degrading
nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=4
SV=1,44.85,4e-18,RNase_T,Exonuclease, RNase T/DNA polymerase III;
Ribonuclease H-like,Ribonuclease H-like domain; no ,CUFF.33291.1
(445 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g023955.1 | small RNA degrading nuclease | HC | chr1:77333... 607 e-174
Medtr1g023955.2 | small RNA degrading nuclease | HC | chr1:77335... 607 e-174
Medtr1g029410.1 | small RNA degrading nuclease | HC | chr1:10081... 124 2e-28
Medtr1g029410.2 | small RNA degrading nuclease | HC | chr1:10081... 123 3e-28
Medtr2g078510.1 | RNA exonuclease-like protein | HC | chr2:32752... 66 6e-11
Medtr2g061690.1 | RNA exonuclease-like protein | HC | chr2:26166... 62 8e-10
Medtr2g100280.1 | RNA exonuclease-like protein | HC | chr2:43066... 60 4e-09
>Medtr1g023955.1 | small RNA degrading nuclease | HC |
chr1:7733337-7739883 | 20130731
Length = 550
Score = 607 bits (1566), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/469 (64%), Positives = 363/469 (77%), Gaps = 39/469 (8%)
Query: 1 MRHHSNQYSVEKLKDKSHVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAM 60
MRHHSNQY++E+LKD+S SPEQ LVQ+TLQHP+YP+DYS SIDEGW++INL+K K +
Sbjct: 78 MRHHSNQYTLERLKDRSQDSPEQRLVQVTLQHPMYPMDYSLPSIDEGWLVINLKKKAKGI 137
Query: 61 RSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRD 120
+ST MVAVDCEMVLCEDGTEALV+VCVVDHNL+VKLHK VKP+KAI DY+TE+TGVS++D
Sbjct: 138 KSTTMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQD 197
Query: 121 LETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHR 180
LETVTC+LADIQK MK+LL NGTILVGHSL NDLRVLKLD+VRVVDTAYIFQ LDGSIHR
Sbjct: 198 LETVTCSLADIQKSMKKLLYNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHR 257
Query: 181 KPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSES 240
+PSLN LCQ+VLGYEVR+KGA H+CLDDACA MKLVLA+IKHGVDK FP TLVQE VSES
Sbjct: 258 RPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEPVSES 317
Query: 241 DMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEAYEN 300
+M+KLL+H IPT+VN E LH+IVPGDFT E KPSR GQ KYSALA FKNQ+EA++AYEN
Sbjct: 318 EMSKLLIHRIPTTVNTEALHEIVPGDFTIERKPSRNGQGDKYSALAIFKNQREAHDAYEN 377
Query: 301 VQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADEPDNLLQSKRALQVDEADEAVNA 360
VQGSQTKDS GR QK V + STGM+VSLFVRKM D+ + SKR L E + V
Sbjct: 378 VQGSQTKDSNGRLQKLVTCRLSTGMSVSLFVRKMGIDDHHKKMPSKRDLPEGEMVD-VPE 436
Query: 361 SKKAKTVPQIEEDALIGSTKG--------------------------------------D 382
+KK K P++E+DA + + +
Sbjct: 437 NKKVKMDPEVEKDAYLKQIEALNQRLKESELEIESLREQLRKKDLQVDDSKEVKVDHEIE 496
Query: 383 TCTHLKEIEALNEQLKQKDLEIESLREQLRKRDFEVSKLHIMISSLKKR 431
HLKEIEALN++LK+ + EIES REQLRK+DFE++ LH M+++++KR
Sbjct: 497 KDAHLKEIEALNQRLKESEAEIESSREQLRKKDFEITALHKMVANIQKR 545
>Medtr1g023955.2 | small RNA degrading nuclease | HC |
chr1:7733526-7739883 | 20130731
Length = 550
Score = 607 bits (1566), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/469 (64%), Positives = 363/469 (77%), Gaps = 39/469 (8%)
Query: 1 MRHHSNQYSVEKLKDKSHVSPEQGLVQITLQHPLYPLDYSFQSIDEGWVIINLRKNKKAM 60
MRHHSNQY++E+LKD+S SPEQ LVQ+TLQHP+YP+DYS SIDEGW++INL+K K +
Sbjct: 78 MRHHSNQYTLERLKDRSQDSPEQRLVQVTLQHPMYPMDYSLPSIDEGWLVINLKKKAKGI 137
Query: 61 RSTAMVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRD 120
+ST MVAVDCEMVLCEDGTEALV+VCVVDHNL+VKLHK VKP+KAI DY+TE+TGVS++D
Sbjct: 138 KSTTMVAVDCEMVLCEDGTEALVKVCVVDHNLEVKLHKLVKPEKAIKDYKTEITGVSAQD 197
Query: 121 LETVTCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHR 180
LETVTC+LADIQK MK+LL NGTILVGHSL NDLRVLKLD+VRVVDTAYIFQ LDGSIHR
Sbjct: 198 LETVTCSLADIQKSMKKLLYNGTILVGHSLYNDLRVLKLDYVRVVDTAYIFQPLDGSIHR 257
Query: 181 KPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKEFPFTLVQEHVSES 240
+PSLN LCQ+VLGYEVR+KGA H+CLDDACA MKLVLA+IKHGVDK FP TLVQE VSES
Sbjct: 258 RPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKIKHGVDKPFPLTLVQEPVSES 317
Query: 241 DMTKLLLHGIPTSVNIETLHKIVPGDFTTEVKPSRKGQRAKYSALATFKNQQEAYEAYEN 300
+M+KLL+H IPT+VN E LH+IVPGDFT E KPSR GQ KYSALA FKNQ+EA++AYEN
Sbjct: 318 EMSKLLIHRIPTTVNTEALHEIVPGDFTIERKPSRNGQGDKYSALAIFKNQREAHDAYEN 377
Query: 301 VQGSQTKDSFGRPQKEVMFQPSTGMTVSLFVRKMTADEPDNLLQSKRALQVDEADEAVNA 360
VQGSQTKDS GR QK V + STGM+VSLFVRKM D+ + SKR L E + V
Sbjct: 378 VQGSQTKDSNGRLQKLVTCRLSTGMSVSLFVRKMGIDDHHKKMPSKRDLPEGEMVD-VPE 436
Query: 361 SKKAKTVPQIEEDALIGSTKG--------------------------------------D 382
+KK K P++E+DA + + +
Sbjct: 437 NKKVKMDPEVEKDAYLKQIEALNQRLKESELEIESLREQLRKKDLQVDDSKEVKVDHEIE 496
Query: 383 TCTHLKEIEALNEQLKQKDLEIESLREQLRKRDFEVSKLHIMISSLKKR 431
HLKEIEALN++LK+ + EIES REQLRK+DFE++ LH M+++++KR
Sbjct: 497 KDAHLKEIEALNQRLKESEAEIESSREQLRKKDFEITALHKMVANIQKR 545
>Medtr1g029410.1 | small RNA degrading nuclease | HC |
chr1:10081820-10091351 | 20130731
Length = 571
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 2/159 (1%)
Query: 65 MVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETV 124
M+AVDCEM + +G E L V +VD +V L + VKP I DY T +G+++ L+ V
Sbjct: 218 MLAVDCEMCITGEGFE-LTRVTLVDVKGQVLLDELVKPSNPITDYNTRFSGITAEMLDGV 276
Query: 125 TCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSL 184
T +L DIQ+K ++L+ TILVGHSL+NDL LK+ H V+DTA +++ GS H K +L
Sbjct: 277 TTSLTDIQEKFQKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH-KSAL 335
Query: 185 NGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHG 223
L + L E+++ G H+ ++DA A M+L L +I++G
Sbjct: 336 RFLTKRFLSREIQQSGDGHDSVEDARATMELALLKIRNG 374
>Medtr1g029410.2 | small RNA degrading nuclease | HC |
chr1:10081800-10091381 | 20130731
Length = 413
Score = 123 bits (309), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/159 (42%), Positives = 102/159 (64%), Gaps = 2/159 (1%)
Query: 65 MVAVDCEMVLCEDGTEALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLETV 124
M+AVDCEM + +G E L V +VD +V L + VKP I DY T +G+++ L+ V
Sbjct: 255 MLAVDCEMCITGEGFE-LTRVTLVDVKGQVLLDELVKPSNPITDYNTRFSGITAEMLDGV 313
Query: 125 TCTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDHVRVVDTAYIFQSLDGSIHRKPSL 184
T +L DIQ+K ++L+ TILVGHSL+NDL LK+ H V+DTA +++ GS H K +L
Sbjct: 314 TTSLTDIQEKFQKLVYKETILVGHSLENDLLALKISHDLVIDTAVLYKHPRGSSH-KSAL 372
Query: 185 NGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHG 223
L + L E+++ G H+ ++DA A M+L L +I++G
Sbjct: 373 RFLTKRFLSREIQQSGDGHDSVEDARATMELALLKIRNG 411
>Medtr2g078510.1 | RNA exonuclease-like protein | HC |
chr2:32752393-32757824 | 20130731
Length = 283
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 63 TAMVAVDCEMVLCEDGTE-ALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDL 121
T VA+DCEMV G + AL V +V+ V + V+P + +VD+RT+++G+ RDL
Sbjct: 119 TDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDL 178
Query: 122 ETVT--CTLADIQKKMKRLLSNGTILVGHSLDNDLRVLKLDH 161
CT QKK+ L+ +G ILVGH+L NDL+ L L H
Sbjct: 179 RKAKDFCT---AQKKVAELI-HGRILVGHALSNDLKALLLSH 216
>Medtr2g061690.1 | RNA exonuclease-like protein | HC |
chr2:26166865-26169358 | 20130731
Length = 350
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 61 RSTAMVAVDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSS 118
R VA+ C+MV DG+ + VC++D + H V P + +YR E TG+
Sbjct: 126 RGPQAVALACKMVGGGSDGSLDLCARVCLIDEYENIIFHSYVIPPIPVTNYRYETTGIRH 185
Query: 119 RDLETVTCTLADIQKKMKRLLSNG-------------TILVGHSLDNDLRVLKLDH--VR 163
L L +Q+K++ L NG ILVGH LD+DL L++++ +
Sbjct: 186 EYLRDAM-PLKVVQRKIQDFLCNGEPIWTIRSRGGKARILVGHGLDHDLASLQIEYPTPK 244
Query: 164 VVDTAYIFQSLDGSIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVL 217
+ DTA + L + SL L Q LGY+++ + DD AAM+L +
Sbjct: 245 IRDTAK-YPPLMKTSKLSNSLKYLTQTYLGYDIQT--GIQDPYDDCVAAMRLYM 295
>Medtr2g100280.1 | RNA exonuclease-like protein | HC |
chr2:43066107-43062965 | 20130731
Length = 366
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 92/180 (51%), Gaps = 24/180 (13%)
Query: 66 VAVDCEMVLC-EDGT-EALVEVCVVDHNLKVKLHKRVKPDKAIVDYRTEVTGVSSRDLET 123
+A+DCEMV DG+ E VC+VD + + H VKP + +YR ++TG++ L+
Sbjct: 139 IAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIPVTNYRYDITGLTEEHLQD 198
Query: 124 VTCTLADIQKKMKRLLSNGT-------------ILVGHSLDNDLRVLKL---DHVRVVDT 167
L ++++K+ ++L NG +LVGH L +DL L + DH+ + DT
Sbjct: 199 GM-PLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHDLDCLGMSYPDHL-MRDT 256
Query: 168 AYIFQSLDGSIHRKPSLNGLCQAVLGYEVREKGAPHNCLDDACAAMKLVLARIKHGVDKE 227
A ++ L + SL L + LGY+++ HN +D + M+L RI+ KE
Sbjct: 257 A-KYRPLMKTNLVCYSLKYLTRTYLGYDIQT--GTHNPYEDCISVMRLY-KRIRGQSHKE 312