Miyakogusa Predicted Gene
- Lj1g3v4691700.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4691700.1 tr|G7L4Y5|G7L4Y5_MEDTR Polyadenylate binding
protein OS=Medicago truncatula GN=MTR_7g102730 PE=4
SV=,80.41,0,RRM_1,RNA recognition motif domain;
PABP,Polyadenylate-binding protein/Hyperplastic disc protein;
se,CUFF.32874.1
(636 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g102730.1 | polyadenylate-binding protein | HC | chr7:4165... 938 0.0
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ... 593 e-169
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341... 425 e-119
Medtr1g097440.2 | polyadenylate-binding protein | HC | chr1:4396... 424 e-118
Medtr1g097440.1 | polyadenylate-binding protein | HC | chr1:4396... 424 e-118
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708... 409 e-114
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701... 402 e-112
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440... 380 e-105
Medtr6g040070.1 | DEAD/DEAH-box helicase | HC | chr6:14397151-14... 303 4e-82
Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC | ch... 123 5e-28
Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC | ch... 117 5e-26
Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC | ch... 114 2e-25
Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC | ch... 111 2e-24
Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC | ch... 107 5e-23
Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC | ch... 105 1e-22
Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 102 1e-21
Medtr4g124940.1 | nucleolysin TIAR-like protein | HC | chr4:5182... 100 4e-21
Medtr3g109090.3 | nucleolysin TIAR-like protein | HC | chr3:5042... 100 5e-21
Medtr3g109090.1 | nucleolysin TIAR-like protein | HC | chr3:5042... 100 5e-21
Medtr3g109090.2 | nucleolysin TIAR-like protein | HC | chr3:5042... 100 5e-21
Medtr8g022050.1 | nucleolysin TIAR-like protein | HC | chr8:7704... 88 2e-17
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-... 85 3e-16
Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC | chr4:43224367-... 82 1e-15
Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC | chr3:34381451-... 81 3e-15
Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC | ch... 80 4e-15
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 1e-14
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 79 1e-14
Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 4e-14
Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 4e-14
Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 77 4e-14
Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC | ch... 77 5e-14
Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC | ch... 76 9e-14
Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC | ch... 76 9e-14
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 9e-14
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 1e-13
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 1e-13
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 76 1e-13
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 2e-13
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr... 75 2e-13
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr... 75 3e-13
Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 75 3e-13
Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 74 3e-13
Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC | chr3:34381440-... 74 3e-13
Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC | ch... 72 1e-12
Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 70 5e-12
Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 5e-12
Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 70 5e-12
Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 69 1e-11
Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 68 4e-11
Medtr4g122650.1 | flowering time control FCA-like protein | HC |... 67 4e-11
Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 4e-11
Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 4e-11
Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 4e-11
Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 4e-11
Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-11
Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-11
Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 67 5e-11
Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 67 5e-11
Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |... 67 8e-11
Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |... 67 8e-11
Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |... 66 8e-11
Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |... 66 8e-11
Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |... 66 9e-11
Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |... 66 9e-11
Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 9e-11
Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 1e-10
Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |... 66 1e-10
Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 66 1e-10
Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 65 2e-10
Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 3e-10
Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 3e-10
Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 65 3e-10
Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 3e-10
Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 5e-10
Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 64 5e-10
Medtr4g068120.2 | flowering time control FPA-like protein | HC |... 63 9e-10
Medtr4g068120.1 | flowering time control FPA-like protein | HC |... 63 9e-10
Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 1e-09
Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 62 1e-09
Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C, p... 62 2e-09
Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C, p... 62 2e-09
Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 62 3e-09
Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 61 3e-09
Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 61 3e-09
Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 60 5e-09
Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 1e-08
Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 2e-08
Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 2e-08
Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 59 2e-08
Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-08
Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 58 3e-08
Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-08
Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-08
Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-08
Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 58 3e-08
Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 5e-08
Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 5e-08
Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 57 6e-08
Medtr1889s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protei... 57 8e-08
Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 1e-07
Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 1e-07
Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 56 1e-07
Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 56 1e-07
Medtr8g092550.1 | CC1-like splicing factor | HC | chr8:38688579-... 56 1e-07
Medtr8g031560.1 | eukaryotic translation initiation factor 3 sub... 56 1e-07
Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 2e-07
Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |... 55 2e-07
Medtr1723s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protei... 55 2e-07
Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit, spl... 55 2e-07
Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 2e-07
Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 3e-07
Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 3e-07
Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 55 3e-07
Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 55 3e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777... 54 4e-07
Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit, spl... 54 4e-07
Medtr3g095230.1 | CC1-like splicing factor | LC | chr3:43513030-... 53 7e-07
Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 7e-07
Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit, spl... 53 8e-07
Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit, spl... 53 8e-07
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 8e-07
Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit, spl... 53 8e-07
Medtr3g095230.2 | CC1-like splicing factor | LC | chr3:43513031-... 53 8e-07
Medtr3g095230.3 | CC1-like splicing factor | LC | chr3:43513031-... 53 8e-07
Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 9e-07
Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 53 9e-07
Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 1e-06
Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 1e-06
Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 1e-06
Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 53 1e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub... 52 1e-06
Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c... 52 2e-06
Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein... 52 2e-06
Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 51 3e-06
Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 51 3e-06
Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit, spl... 51 4e-06
Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit, spl... 51 4e-06
Medtr4g036415.1 | splicing factor-like protein | HC | chr4:13104... 51 4e-06
Medtr4g063557.3 | RNA and export factor-binding protein | HC | c... 51 4e-06
Medtr4g063557.2 | RNA and export factor-binding protein | HC | c... 51 4e-06
Medtr4g063557.1 | RNA and export factor-binding protein | HC | c... 51 4e-06
Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 5e-06
Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit, spl... 50 5e-06
Medtr0022s0360.1 | RNA-binding (RRM/RBD/RNP motif) family protei... 50 6e-06
Medtr0022s0360.2 | RNA-binding (RRM/RBD/RNP motif) family protei... 50 6e-06
Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit, spl... 50 6e-06
Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit, spl... 50 6e-06
Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit, spl... 50 6e-06
Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit, spl... 50 6e-06
Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein... 50 6e-06
Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein... 50 8e-06
>Medtr7g102730.1 | polyadenylate-binding protein | HC |
chr7:41652502-41656607 | 20130731
Length = 629
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 474/624 (75%), Positives = 524/624 (83%), Gaps = 7/624 (1%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDLHPD+SD+QLHDAF++FK LASVR+CRDSS+G+SLCYGYVNFLSP DA++AIEVK
Sbjct: 12 LYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDAIRAIEVK 71
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
NHS LNGK IRV+WSRRDPD RKSCIGNVFVKNLAES+D+SGLE++FKK+GNILSSKVVM
Sbjct: 72 NHSTLNGKAIRVMWSRRDPDARKSCIGNVFVKNLAESIDNSGLEDMFKKFGNILSSKVVM 131
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
++DGKSKGYGFVQFE+EESANAAIE+LNG + DKQIYVG+FVKKS+RI GPD YTNL
Sbjct: 132 SEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDRISSGPDTRYTNL 191
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
YMKNLDLDI+E LL+EKFSSFGKI+SLA++KD NGMSKGFGFVN++NP+DAKRA+E MNG
Sbjct: 192 YMKNLDLDISETLLREKFSSFGKIISLAVAKDSNGMSKGFGFVNFDNPEDAKRAMETMNG 251
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
QLGSKILYVARAQKKAERE+IL+ QFEEKRKEQ+LKYKGSNIYVKNIDDNVSDE LRDH
Sbjct: 252 LQLGSKILYVARAQKKAEREQILHQQFEEKRKEQVLKYKGSNIYVKNIDDNVSDEGLRDH 311
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
FS CG+ITSAK+M+D+KGISKGFGFVCFSTPEEANKAVN+FHGFMFHGKPLYV+LAQRKE
Sbjct: 312 FSVCGTITSAKIMRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKE 371
Query: 374 DRQAQLQLQYAQKIAGLAGPSTAIIPGGYPPFYYTATGVVPHVPHRAGLMYQPLAVRPGW 433
DRQAQLQLQYAQ+IAGLAGPSTAI+PGGYPPFYYTATGVV H P RAGL+YQP+A+RPGW
Sbjct: 372 DRQAQLQLQYAQQIAGLAGPSTAIVPGGYPPFYYTATGVVSHAPPRAGLVYQPMALRPGW 431
Query: 434 RANGFAPPSRSFQQSPIPASQVAXXXXXXXXXXXXXXXHAGSQGNTHS-VNMXXXXXXXX 492
RANG APP+RSFQQSP P HA SQGNTHS M
Sbjct: 432 RANGSAPPARSFQQSPTPVVS-NNNTRQHRQNRGRMNGHAVSQGNTHSGTYMPQAQQASQ 490
Query: 493 XXXXXRESSTQQRTGQAKYKASGRQHEMEKGSEFSSSGSNPIGGSQGSEVLHSMLAAATP 552
RESSTQQRTGQAKY SGR EMEKGS SSSG S G EVLHSMLA ATP
Sbjct: 491 SAISSRESSTQQRTGQAKYVPSGRHREMEKGSGLSSSGG-----SLGPEVLHSMLANATP 545
Query: 553 EQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXXXXXXXXXXXAKVEEAVQVLK 612
EQQKEILGEHLYMLVQK+KP+ AAKITGM AKVEEA QVLK
Sbjct: 546 EQQKEILGEHLYMLVQKIKPNLAAKITGMLLEMDNAELLVLIESPESLSAKVEEAFQVLK 605
Query: 613 NSKNKVSGQDKIHSSFLSAEVAVN 636
NSK KVSGQD +HS+FLSAEVAVN
Sbjct: 606 NSKAKVSGQDVLHSNFLSAEVAVN 629
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 105/191 (54%), Gaps = 17/191 (8%)
Query: 186 PDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDA 244
P A+ +LY+ +L D++++ L + FS F + S+ I +D +G S +G+VN+ +P DA
Sbjct: 5 PSATPASLYVGDLHPDLSDSQLHDAFSDFKTLASVRICRDSSSGKSLCYGYVNFLSPHDA 64
Query: 245 KRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDN 304
RA+E N S L K + V +++ + RK I N++VKN+ ++
Sbjct: 65 IRAIEVKNHSTLNGKAIRVMWSRRDP-----------DARKSCI-----GNVFVKNLAES 108
Query: 305 VSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
+ + L D F G+I S+KV+ E G SKG+GFV F T E AN A+ +G++ K +
Sbjct: 109 IDNSGLEDMFKKFGNILSSKVVMSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQI 168
Query: 365 YVALAQRKEDR 375
YV +K DR
Sbjct: 169 YVGKFVKKSDR 179
>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
HC | chr1:27029234-27025443 | 20130731
Length = 522
Score = 593 bits (1529), Expect = e-169, Method: Compositional matrix adjust.
Identities = 291/437 (66%), Positives = 347/437 (79%), Gaps = 17/437 (3%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDLH D++DAQL+ AF+EF L S RVC+DS+TG+SLCYGYVN S Q+A++AIE+K
Sbjct: 17 LYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEAIRAIELK 76
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
NHS LNGKVIRV+W RD D RKS GNVFVKNLA S+D+ GL ++F+KYGNILSSK+
Sbjct: 77 NHSSLNGKVIRVMWLSRDADARKSGKGNVFVKNLAASIDNVGLHDLFQKYGNILSSKIAR 136
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
++DGKSKG+G++QF+SEESAN AI+K+NGST+ DKQIYVG+F++KSER LP DA +TNL
Sbjct: 137 SEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSERSLPDLDAKFTNL 196
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KNLD +TE L EKFSSFGKIVSLAI KDENG SKGFGFVNY++PDDA+RA+EAM+G
Sbjct: 197 YVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDENGQSKGFGFVNYDSPDDARRAMEAMDG 256
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
SQ GSKILYVARAQKK ERE+IL+H F EK LK+ GSNIYVKNID +V DEELRDH
Sbjct: 257 SQFGSKILYVARAQKKVEREQILHHLFVEKG----LKHMGSNIYVKNIDTSVGDEELRDH 312
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
FSACG + SAKVM+D+KG SKGFGFVCFST EA K+++ F+G MFHGKPLYV AQ+KE
Sbjct: 313 FSACGEVLSAKVMRDDKGTSKGFGFVCFSTVVEAFKSMSCFNGCMFHGKPLYVDFAQKKE 372
Query: 374 DRQAQLQLQYAQKIAGLAG-PSTAIIPGGY-PPFYYTATGVVPHVPHRAGLMYQPLAVRP 431
DR+ LQ +A K+ GLAG STA+IPG PPF Y +GVV H P +
Sbjct: 373 DRKRLLQHMHAPKLEGLAGHSSTAVIPGARPPPFIYRTSGVVYHPP-----------LGS 421
Query: 432 GWRANGFAPPSRSFQQS 448
GW ANGFA PS QQS
Sbjct: 422 GWSANGFASPSIGLQQS 438
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 17/191 (8%)
Query: 186 PDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDA 244
P + LY+ +L D+T+A L + FS F ++S + KD G S +G+VN + +A
Sbjct: 10 PASPAATLYVGDLHSDVTDAQLYKAFSEFNTLISARVCKDSATGKSLCYGYVNLSSHQEA 69
Query: 245 KRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDN 304
RA+E N S L K++ V + A+ K N++VKN+ +
Sbjct: 70 IRAIELKNHSSLNGKVIRVMWLSRDADAR----------------KSGKGNVFVKNLAAS 113
Query: 305 VSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
+ + L D F G+I S+K+ + E G SKGFG++ F + E AN A+ +G K +
Sbjct: 114 IDNVGLHDLFQKYGNILSSKIARSEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQI 173
Query: 365 YVALAQRKEDR 375
YV RK +R
Sbjct: 174 YVGKFIRKSER 184
>Medtr4g085540.1 | polyadenylate-binding protein | HC |
chr4:33416965-33423437 | 20130731
Length = 654
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/438 (49%), Positives = 296/438 (67%), Gaps = 12/438 (2%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL +++D+QL+D F + + SVRVCRD +T RSL YGYVN+ +PQDA +A++V
Sbjct: 36 LYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDVL 95
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N + LN + IR+++S RDP +RKS GN+F+KNL +++D L + F +GNILS KV +
Sbjct: 96 NFTPLNNRPIRIMYSHRDPSIRKSGQGNIFIKNLDKAIDHKALHDTFSSFGNILSCKVAV 155
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
G+SKGYGFVQF++EE+A AIEKLNG +NDKQ+YVG F++K ER G A + N+
Sbjct: 156 DGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERESTGDRAKFNNV 215
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
++KNL T+ LK+ F FG I S + +D +G SK FGFVN+E+ DDA RA+EA+NG
Sbjct: 216 FVKNLSESTTDDELKKTFGEFGTITSAVVMRDGDGKSKCFGFVNFESTDDAARAVEALNG 275
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
++ K YV +AQKK+ERE L +FE+ KE KY+G+N+YVKN+DD+++DE+L++
Sbjct: 276 KKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLKEL 335
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
FS+ G+ITS KVM+D G+S+G GFV FSTPEEA++A+ +G M KPLYV LAQRKE
Sbjct: 336 FSSYGTITSCKVMRDPNGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKE 395
Query: 374 DRQAQLQLQYAQKIAGLAGPSTAIIPGGYPP---------FYYTATGVVPHVPHRAGLMY 424
DR+A+LQ Q+AQ PS A YPP FY + +P + G Y
Sbjct: 396 DRRARLQAQFAQMRPVSMPPSVAPRMPMYPPGGPGMGQQIFYGQGPPAI--IPSQPGFGY 453
Query: 425 QPLAVRPGWRANGFAPPS 442
Q V PG R G P+
Sbjct: 454 QQQLV-PGMRPGGAPVPN 470
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 109/188 (57%), Gaps = 17/188 (9%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T+LY+ +LD+++T++ L + F+ G++VS+ + +D S G+G+VNY NP DA RAL+
Sbjct: 34 TSLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALD 93
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
+N + L ++ + + + +H R I K NI++KN+D + +
Sbjct: 94 VLNFTPLNNRPIRI-----------MYSH-----RDPSIRKSGQGNIFIKNLDKAIDHKA 137
Query: 310 LRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
L D FS+ G+I S KV D G SKG+GFV F T E A KA+ +G + + K +YV
Sbjct: 138 LHDTFSSFGNILSCKVAVDGSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPF 197
Query: 370 QRKEDRQA 377
RK++R++
Sbjct: 198 LRKQERES 205
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 48/88 (54%), Gaps = 6/88 (6%)
Query: 533 PIGGSQGSEVLHSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXX 592
PIG L S LA A+PEQQ+ +LGE+LY LV++L+P AAK+TGM
Sbjct: 556 PIGA------LASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLH 609
Query: 593 XXXXXXXXXAKVEEAVQVLKNSKNKVSG 620
AKV EA+ VL+N + +G
Sbjct: 610 LLESPEALKAKVAEAMDVLRNVAQQQAG 637
>Medtr1g097440.2 | polyadenylate-binding protein | HC |
chr1:43966152-43970565 | 20130731
Length = 646
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/611 (41%), Positives = 347/611 (56%), Gaps = 29/611 (4%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL +++ QL D F++ + S+RVCRD + SL Y YVNF + QDA A E+
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N + LN K IR+++S+RDP VRKS GNVF+KNL S+D L + F +G +LS KV +
Sbjct: 92 NFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVAL 151
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
+G+SKGYGFVQF++EE+A +AI++L+G INDKQ+YVG FV+ ER +TN+
Sbjct: 152 DGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNV 211
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KN+ T+ LK+ F FG I S + KD NG S+ FGFVN+++PD A A+E +NG
Sbjct: 212 YVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNG 271
Query: 254 SQLG-SKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRD 312
+ + K+L+V RAQ+KAERE L +FE++R + K +G+N+Y+KN+DD+ ++E+L+D
Sbjct: 272 TAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKD 331
Query: 313 HFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
FS G++TS +VM D G SKG GFV FSTPEEANKA+N +G + KPL+VA+AQRK
Sbjct: 332 LFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRK 391
Query: 373 EDRQAQLQLQYAQKIAGLAGPSTAIIPGGYPPFYYTATGVVPHVPHRAGLMYQPLAVRPG 432
E+R+AQLQ +AQ A PGG P TG P P A P + G
Sbjct: 392 EERKAQLQAHFAQIRA----------PGGMAPLAAELTGYHPGAPRLA-----PQQLYYG 436
Query: 433 WRANGFAPPSRS---FQQSPIPASQVAXXXXXXXXXXXXXXXHAGSQ-GNTHSVNMXXXX 488
GF PP + FQQ +P + G + G + N+
Sbjct: 437 QGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVQ 496
Query: 489 XXXXXXXXXRESSTQQRTGQAKYKASGRQHEMEKGS----EFSSSG--SNPIGGSQ-GSE 541
+ + SG H+ G F SG + PI + GS
Sbjct: 497 QNQMLHRNSNQGYRYMANNRNGMDPSGV-HQGLAGPMLPMTFDGSGVSAAPIDNQRPGST 555
Query: 542 VLHSMLAAATPEQQKEILGEHLYMLVQKLKPSQ-AAKITGMXXXXXXXXXXXXXXXXXXX 600
L S LA+ATP+ Q+ +LGEHLY LV +L P+Q AK+TGM
Sbjct: 556 SLASALASATPDNQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDAL 615
Query: 601 XAKVEEAVQVL 611
KV EA+QVL
Sbjct: 616 KIKVSEALQVL 626
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 17/201 (8%)
Query: 176 VKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSK-GFG 234
V S L G + +LY+ +L+ + E L + FS ++VS+ + +D+ S G+
Sbjct: 15 VAPSSAALTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYA 74
Query: 235 FVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGS 294
+VN+ N DA A E +N + L K + + +Q R + K
Sbjct: 75 YVNFTNAQDAANAKELLNFTPLNEKPIRIMFSQ----------------RDPSVRKSGSG 118
Query: 295 NIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTF 354
N+++KN+D ++ + L D F+A G + S KV D G SKG+GFV F E A A+
Sbjct: 119 NVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 355 HGFMFHGKPLYVALAQRKEDR 375
G + + K +YV R ++R
Sbjct: 179 DGMLINDKQVYVGFFVRHQER 199
>Medtr1g097440.1 | polyadenylate-binding protein | HC |
chr1:43966161-43970565 | 20130731
Length = 646
Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 252/611 (41%), Positives = 347/611 (56%), Gaps = 29/611 (4%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL +++ QL D F++ + S+RVCRD + SL Y YVNF + QDA A E+
Sbjct: 32 LYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYAYVNFTNAQDAANAKELL 91
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N + LN K IR+++S+RDP VRKS GNVF+KNL S+D L + F +G +LS KV +
Sbjct: 92 NFTPLNEKPIRIMFSQRDPSVRKSGSGNVFIKNLDTSIDHKALHDTFAAFGPVLSCKVAL 151
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
+G+SKGYGFVQF++EE+A +AI++L+G INDKQ+YVG FV+ ER +TN+
Sbjct: 152 DGNGQSKGYGFVQFDNEEAAKSAIKQLDGMLINDKQVYVGFFVRHQERARTNGSPKFTNV 211
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KN+ T+ LK+ F FG I S + KD NG S+ FGFVN+++PD A A+E +NG
Sbjct: 212 YVKNISEASTDEDLKQLFGPFGMITSATVMKDANGKSRCFGFVNFQSPDSAAAAVEKLNG 271
Query: 254 SQLG-SKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRD 312
+ + K+L+V RAQ+KAERE L +FE++R + K +G+N+Y+KN+DD+ ++E+L+D
Sbjct: 272 TAINDDKVLFVGRAQRKAERENELKAKFEQERISRYEKLQGANLYLKNLDDDFNEEKLKD 331
Query: 313 HFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
FS G++TS +VM D G SKG GFV FSTPEEANKA+N +G + KPL+VA+AQRK
Sbjct: 332 LFSEFGTVTSCRVMLDSHGHSKGSGFVAFSTPEEANKALNEMNGKLVGRKPLFVAVAQRK 391
Query: 373 EDRQAQLQLQYAQKIAGLAGPSTAIIPGGYPPFYYTATGVVPHVPHRAGLMYQPLAVRPG 432
E+R+AQLQ +AQ A PGG P TG P P A P + G
Sbjct: 392 EERKAQLQAHFAQIRA----------PGGMAPLAAELTGYHPGAPRLA-----PQQLYYG 436
Query: 433 WRANGFAPPSRS---FQQSPIPASQVAXXXXXXXXXXXXXXXHAGSQ-GNTHSVNMXXXX 488
GF PP + FQQ +P + G + G + N+
Sbjct: 437 QGTPGFIPPQPAGFGFQQQILPGMRPGVAPNFVMPYQLQRQGQNGQRIGARRNGNLQHVQ 496
Query: 489 XXXXXXXXXRESSTQQRTGQAKYKASGRQHEMEKGS----EFSSSG--SNPIGGSQ-GSE 541
+ + SG H+ G F SG + PI + GS
Sbjct: 497 QNQMLHRNSNQGYRYMANNRNGMDPSGV-HQGLAGPMLPMTFDGSGVSAAPIDNQRPGST 555
Query: 542 VLHSMLAAATPEQQKEILGEHLYMLVQKLKPSQ-AAKITGMXXXXXXXXXXXXXXXXXXX 600
L S LA+ATP+ Q+ +LGEHLY LV +L P+Q AK+TGM
Sbjct: 556 SLASALASATPDNQRMMLGEHLYPLVDRLTPNQHTAKVTGMLLEMDQSEVIHLIESPDAL 615
Query: 601 XAKVEEAVQVL 611
KV EA+QVL
Sbjct: 616 KIKVSEALQVL 626
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 17/201 (8%)
Query: 176 VKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSK-GFG 234
V S L G + +LY+ +L+ + E L + FS ++VS+ + +D+ S G+
Sbjct: 15 VAPSSAALTGGPFANASLYVGDLEGSVNEGQLFDLFSQVAQVVSIRVCRDQTRRSSLGYA 74
Query: 235 FVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGS 294
+VN+ N DA A E +N + L K + + +Q R + K
Sbjct: 75 YVNFTNAQDAANAKELLNFTPLNEKPIRIMFSQ----------------RDPSVRKSGSG 118
Query: 295 NIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTF 354
N+++KN+D ++ + L D F+A G + S KV D G SKG+GFV F E A A+
Sbjct: 119 NVFIKNLDTSIDHKALHDTFAAFGPVLSCKVALDGNGQSKGYGFVQFDNEEAAKSAIKQL 178
Query: 355 HGFMFHGKPLYVALAQRKEDR 375
G + + K +YV R ++R
Sbjct: 179 DGMLINDKQVYVGFFVRHQER 199
>Medtr1g019150.1 | polyadenylate-binding protein | HC |
chr1:5708406-5713691 | 20130731
Length = 647
Score = 409 bits (1052), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/438 (47%), Positives = 294/438 (67%), Gaps = 11/438 (2%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL +++D+QL+D F + + SVRVCRD +T RSL YGYVNF +PQDA +A++V
Sbjct: 34 LYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDVL 93
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N + +N K IRV++S RDP RKS N+F+KNL +++D L + F +G I+S K+
Sbjct: 94 NFTPMNNKSIRVMYSHRDPSSRKSGTANIFIKNLDKTIDHKALHDTFSSFGQIMSCKIAT 153
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
G+SKGYGFVQFE+E+SA AI+KLNG INDKQ++VG F++K +R + N+
Sbjct: 154 DGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSKTKFNNV 213
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KNL TE LK +F ++G I S + +D +G SK FGFVN+EN +DA +A+EA+NG
Sbjct: 214 YVKNLSESFTEDDLKNEFGAYGTITSAVLMRDADGRSKCFGFVNFENAEDAAKAVEALNG 273
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQIL-KYKGSNIYVKNIDDNVSDEELRD 312
++ K YV +AQKK+ERE+ L +FE+ KE ++ K++G N+Y+KN+DD+++DE+L++
Sbjct: 274 KKVDDKEWYVGKAQKKSEREQELKGRFEQTVKESVVDKFQGLNLYLKNLDDSITDEKLKE 333
Query: 313 HFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
FS G+ITS K+M+D G+S+G GFV FSTPEEA++A+ +G M KPLYVA+AQRK
Sbjct: 334 MFSEFGTITSYKIMRDPNGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRK 393
Query: 373 EDRQAQLQLQYAQKIAGLAGPSTAIIPGGYPP--------FYYTATGVVPHVPHRAGLMY 424
EDR+A+LQ Q++Q PS A YPP F Y G +P +AG Y
Sbjct: 394 EDRRARLQAQFSQMRPVAITPSVAPRMPLYPPGTPGLGQQFMY-GQGPPAMMPPQAGFGY 452
Query: 425 QPLAVRPGWRANGFAPPS 442
Q V PG R G PS
Sbjct: 453 QQQLV-PGMRPGGGPMPS 469
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/186 (31%), Positives = 105/186 (56%), Gaps = 17/186 (9%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T+LY+ +L++++ ++ L + F+ G++VS+ + +D S G+G+VN+ NP DA RAL+
Sbjct: 32 TSLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALD 91
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
+N + + +K + V + +H+ RK +NI++KN+D + +
Sbjct: 92 VLNFTPMNNKSIRV-----------MYSHRDPSSRKSGT-----ANIFIKNLDKTIDHKA 135
Query: 310 LRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
L D FS+ G I S K+ D G SKG+GFV F + A A++ +G + + K ++V
Sbjct: 136 LHDTFSSFGQIMSCKIATDGSGQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHF 195
Query: 370 QRKEDR 375
RK+DR
Sbjct: 196 LRKQDR 201
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%)
Query: 543 LHSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXXXXXXXXXXXA 602
L + LA A PEQQ+ +LGE LY LV +L+ AAK+TGM A
Sbjct: 556 LATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKA 615
Query: 603 KVEEAVQVLKN 613
KV EA++VL+N
Sbjct: 616 KVAEAMEVLRN 626
>Medtr3g102040.1 | polyadenylate-binding protein | HC |
chr3:47012095-47003272 | 20130731
Length = 622
Score = 402 bits (1034), Expect = e-112, Method: Compositional matrix adjust.
Identities = 246/610 (40%), Positives = 342/610 (56%), Gaps = 47/610 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL D++D+QL+D F + + SVR+CRD ++ +SL YGYVNF +P DA +A++V
Sbjct: 26 LYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDVL 85
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N + LN K IR+++S RDP VRKS N+F+KNL ++D L + F +GNILS K+ M
Sbjct: 86 NFTPLNNKPIRIMYSHRDPSVRKSGAANIFIKNLDRAIDHKALYDTFSIFGNILSCKIAM 145
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
G SKGYGFVQFE+EESA +AI+KLNG +NDK +YVG F +K +R +A + N+
Sbjct: 146 DASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNNV 205
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KNL +T+ LK F +G I S + +D +G SK FGFVN+EN D A A+EA+NG
Sbjct: 206 YVKNLSESVTDDDLKNTFGEYGTITSAVVMRDVDGKSKCFGFVNFENADAAAEAVEALNG 265
Query: 254 SQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDH 313
+ K YV +A KK ERE L + E+ KE + K+ G+N+Y+KN+DD+V+DE+L +
Sbjct: 266 KKFDDKEWYVGKALKKYERELELKERHEQSMKETVDKFYGANLYLKNLDDSVTDEKLSEL 325
Query: 314 FSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
FS G++TS K+++D +GIS+G GFV FSTPEEA +A+ +G M GKPLYVA AQ+KE
Sbjct: 326 FSEFGTVTSCKILRDPQGISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKE 385
Query: 374 DRQAQLQLQYAQ----KIAGLAGPSTAIIPGGYPP-----FYYTATGVVPHVPHRAGLMY 424
+R+A+LQ Q++Q +A +A P P G P Y A P +AG Y
Sbjct: 386 ERKARLQAQFSQVRPVTMAPIA-PRLPFYPAGVPGMGQQIMYGQAP---PAFISQAGFGY 441
Query: 425 QPLAVRPGWRANGFAPPSRSFQQSPIPASQVAXXXXXXXXXXXXXXXHAGS-QGNTHSVN 483
P + PG R G +P+P + A Q HS+
Sbjct: 442 -PQQLVPGMRPGG----------APMPNFFMPMVQQGQQGQRPGGRRGASPMQQLPHSLP 490
Query: 484 MXXXXXXXXXXXXXRESSTQQRTGQAKYKASGRQHEMEKGSEFSSSGSNPIGGSQGSEVL 543
M Q + GR + G + G + L
Sbjct: 491 MM----------------------QQQMHPRGRVYRYPTGRNPQGIPMPGVAGGTPMQAL 528
Query: 544 HSMLAAATPEQQKEILGEHLYMLVQKLKPSQAAKITGMXXXXXXXXXXXXXXXXXXXXAK 603
+ LA A PEQQ+ +LGE LY LV+K++ + AAK+TGM K
Sbjct: 529 ATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPEALKTK 588
Query: 604 VEEAVQVLKN 613
V EAV VL+N
Sbjct: 589 VAEAVDVLRN 598
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 109/192 (56%), Gaps = 17/192 (8%)
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRA 247
+ T+LY+ +LD D+T++ L + F+ G++VS+ I +D + S G+G+VN+ NP DA +A
Sbjct: 22 TTTSLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKA 81
Query: 248 LEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSD 307
++ +N + L +K + + + R + K +NI++KN+D +
Sbjct: 82 MDVLNFTPLNNKPIRIMYSH----------------RDPSVRKSGAANIFIKNLDRAIDH 125
Query: 308 EELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVA 367
+ L D FS G+I S K+ D G+SKG+GFV F E A A++ +G + + KP+YV
Sbjct: 126 KALYDTFSIFGNILSCKIAMDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVG 185
Query: 368 LAQRKEDRQAQL 379
QRK+DR L
Sbjct: 186 HFQRKQDRDNAL 197
>Medtr6g040190.1 | polyadenylate-binding protein | LC |
chr6:14408733-14404765 | 20130731
Length = 623
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 239/619 (38%), Positives = 353/619 (57%), Gaps = 33/619 (5%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVGDL +++DAQL+D F++ + SVRVCRD T SL YGYVN+ + +DA A+E
Sbjct: 27 LYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAANAMENL 86
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N+ LNGK IR+++S RDP +RK+ N+F+KNL S+D+ L E F +GN+LS KV M
Sbjct: 87 NYVPLNGKPIRIMFSHRDPLIRKTGFANLFIKNLETSIDNKALHETFSVFGNVLSCKVAM 146
Query: 134 ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNL 193
+G SKG+GFVQF++++SA AIEKL+G +NDK++YVG FV+ ER P +TN+
Sbjct: 147 DSNGHSKGHGFVQFDNDQSAKNAIEKLDGMLMNDKKVYVGYFVRCQERSSP----KFTNV 202
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
Y+KNL T LK+ F+SFG I S+ I K +NG SK FGFVN+++ D A A+E +NG
Sbjct: 203 YVKNLSESYTYEDLKQLFNSFGVITSVLIMKYDNGNSKCFGFVNFQSSDSAATAVEKLNG 262
Query: 254 SQLGS-KILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRD 312
S K+L+V RAQKK+ERE L FE+++ ++ K++G+N+Y+KNID ++++E+L++
Sbjct: 263 STTNDGKVLFVGRAQKKSEREAELKAFFEQEKLKRYEKFQGANLYLKNIDKSLNEEKLKE 322
Query: 313 HFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
FS G+ITS KVM D +G SKG GFV F+TPEEA+KA++ +G + KP+YV++AQRK
Sbjct: 323 LFSEFGTITSCKVMSDARGRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRK 382
Query: 373 EDRQAQLQLQYA--QKIAGLAGPSTAIIPGGYPPFYYTATGVVPHVPHRAGLMYQPLAVR 430
E+R+AQLQ ++ Q G AG +++ FYY P G +QP +
Sbjct: 383 EERKAQLQAHFSAIQVSGGNAGYHSSVQRLAPQQFYYEQGTFDLMAPQPNGYGFQPQFM- 441
Query: 431 PGWRANGFAPPS----RSFQQSPIPASQVAXXXXXXXXXXXXXXXHAGSQGNTHSVNMXX 486
GF P+ Q+ P +++ + GN V
Sbjct: 442 -SGVGTGFVTPNYLLPYHLQRQGHPGNRMGGR----------------AAGNFQQVRQKK 484
Query: 487 XXXXXXXXXXXRESSTQQRTGQAKYKASGRQHEMEKGSEFSSSGSNPIGGSQGSEVLHSM 546
+ + Q G + S M+ + ++S N G + L S
Sbjct: 485 NQMLPRNPNQGLKYNGQNGVGMSLDPGS---QMMDPSASAATSTGNHHHGPLSNNSLASA 541
Query: 547 LAAATPEQQKEILGEHLYMLVQKLKPS-QAAKITGMXXXXXXXXXXXXXXXXXXXXAKVE 605
LA+A+ E Q +L EHL+ LV +L P+ Q AK+T M KV
Sbjct: 542 LASASQENQHRMLEEHLHPLVGRLAPTIQTAKVTRMLLEMDQSEVIHLIESPEELKMKVA 601
Query: 606 EAVQVLKNSKNKVSGQDKI 624
EA++ L+++ + DK+
Sbjct: 602 EAMRFLRDASQGPAVGDKL 620
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 290 KYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISK-GFGFVCFSTPEEAN 348
+++ S++YV ++ NV+D +L D FS + S +V +D+ S G+G+V +S +A
Sbjct: 21 RFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNARDAA 80
Query: 349 KAVNTFHGFMFHGKPLYVALAQR 371
A+ + +GKP+ + + R
Sbjct: 81 NAMENLNYVPLNGKPIRIMFSHR 103
>Medtr6g040070.1 | DEAD/DEAH-box helicase | HC |
chr6:14397151-14388452 | 20130731
Length = 784
Score = 303 bits (775), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 167/368 (45%), Positives = 236/368 (64%), Gaps = 19/368 (5%)
Query: 86 LWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFV 145
++S RDP +RK+ NVFVKNL S+D+ L + F +G +LS KV + +GKS GYGFV
Sbjct: 1 MFSHRDPSIRKTGFANVFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSNGKSLGYGFV 60
Query: 146 QFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEA 205
Q+++ ESA AIEKL+G I DK+ +VG F+++ ER G +TN+Y+KNL T+
Sbjct: 61 QYDNHESAKCAIEKLDGMLIKDKKAFVGYFIRRQERSENG-SPKFTNVYVKNLLETDTDE 119
Query: 206 LLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGS-KILYVA 264
LK+ FS++G I S I KDENG SK FGFVN+++PD A A+E +NG+ K+LYV
Sbjct: 120 DLKKLFSTYGVITSAVIMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVG 179
Query: 265 RAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAK 324
RAQ+K ERE L +FE+++ ++ K +G+N+Y+KN+D++++DE+L++ FS G+ITS K
Sbjct: 180 RAQRKCEREAELRAKFEQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCK 239
Query: 325 VMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYA 384
VM D G SKGFGFV FST EEA+KA+N G + KPLYV +AQRKEDR+ +LQ Q++
Sbjct: 240 VMFDAHGHSKGFGFVAFSTSEEASKAINGMSGKIIGQKPLYVVVAQRKEDRKTRLQAQFS 299
Query: 385 Q------------KIAGLAGPSTAIIPGGYPPFYYTATGVVPHVPHRAGLMYQPLAVRPG 432
Q +IAG + + P YY +P AG YQ + PG
Sbjct: 300 QINVSGGITSFPARIAGYHQSTPRLAP---QQLYYGQGTPRLMLPQPAGYGYQQQFI-PG 355
Query: 433 WRANGFAP 440
++ G AP
Sbjct: 356 MQS-GVAP 362
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 110/285 (38%), Positives = 161/285 (56%), Gaps = 17/285 (5%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++V +L I + LHD FA F + S +V DS+ G+SL YG+V + + + A AIE
Sbjct: 17 VFVKNLDTSIDNKVLHDTFATFGTVLSCKVALDSN-GKSLGYGFVQYDNHESAKCAIEKL 75
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSC---IGNVFVKNLAESVDSSGLEEIFKKYGNILSSK 130
+ ++ K V + R + ++ NV+VKNL E+ L+++F YG I S+
Sbjct: 76 DGMLIKDKKAFVGYFIRRQERSENGSPKFTNVYVKNLLETDTDEDLKKLFSTYGVITSAV 135
Query: 131 VVMADDGKSKGYGFVQFESEESANAAIEKLNGSTIND-KQIYVGRFVKKSER-------- 181
++ ++G SK +GFV F+S +SA AA+EKLNG+T ND K +YVGR +K ER
Sbjct: 136 IMKDENGNSKCFGFVNFQSPDSAAAAVEKLNGTTTNDGKVLYVGRAQRKCEREAELRAKF 195
Query: 182 ----ILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVN 237
I NLY+KNLD I + LKE FS FG I S + D +G SKGFGFV
Sbjct: 196 EQEKIKRYEKLQGANLYLKNLDESINDEKLKEMFSEFGTITSCKVMFDAHGHSKGFGFVA 255
Query: 238 YENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEE 282
+ ++A +A+ M+G +G K LYV AQ+K +R+ L QF +
Sbjct: 256 FSTSEEASKAINGMSGKIIGQKPLYVVVAQRKEDRKTRLQAQFSQ 300
>Medtr1g020080.1 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176327 | 20130731
Length = 425
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 151/285 (52%), Gaps = 28/285 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDLH + ++ LH FA + SV+V R+ +G S YG+ F S A + ++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQ-- 156
Query: 74 NHS---MLNG-KVIRVLW---SRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIF-KKYGN 125
N++ M N + R+ W S D ++FV +LA V S L E F Y +
Sbjct: 157 NYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPS 216
Query: 126 ILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFV-KKSERIL 183
+ ++KVV A+ G+SKGYGFV+F E + A+ ++NG + + + +G +KS
Sbjct: 217 VKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQ 276
Query: 184 PG-----------PDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG 232
PG D++ T +++ LD ++T+ LK+ FS +G+I S+ I + KG
Sbjct: 277 PGGQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIP-----VGKG 331
Query: 233 FGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILN 277
GFV + N ++A+ AL+ +NG+ +G + + ++ + A ++ L+
Sbjct: 332 CGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRLD 376
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/331 (25%), Positives = 147/331 (44%), Gaps = 23/331 (6%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+++ +L +D S L F G I S KV+ G S+GYGF +F S +A ++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQNY 158
Query: 161 NGSTI-NDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSS-FGKIV 218
G + N Q + + S + + ++++ +L D+T+++L E FSS + +
Sbjct: 159 AGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSVK 218
Query: 219 SLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILN 277
+ + D N G SKG+GFV + + + +A+ MNG S+ + + A +
Sbjct: 219 AAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQPG 278
Query: 278 HQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFG 337
Q + + I+V +D NV+DE+L+ FS G I S K+ + KG G
Sbjct: 279 GQSNGTSSQSEADSTNTTIFVGGLDSNVTDEDLKQTFSQYGEIASVKIP-----VGKGCG 333
Query: 338 FVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPSTAI 397
FV F+ A +A+ +G M + + ++ + +Q +L + AGP
Sbjct: 334 FVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPAYKQFRL------DVGSWAGPY--- 384
Query: 398 IPGGYPPFYYTATGVVPHVPHRAGLMYQPLA 428
+P Y G PH MY PLA
Sbjct: 385 ----FPSPIYDGYGYAMPSPHHDPSMY-PLA 410
>Medtr2g097960.1 | polyadenylate-binding protein RBP47B | HC |
chr2:41853094-41847353 | 20130731
Length = 428
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 150/322 (46%), Gaps = 49/322 (15%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L F+ + S+++ R+ TG+ YG++ F+S A + ++
Sbjct: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
Query: 74 NHSMLNG--KVIRVLWS-----RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKK-YGN 125
N + + G + R+ W+ R PD ++FV +LA V L+E F+ YG+
Sbjct: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGPDH--SIFVGDLAPDVTDYLLQETFRTHYGS 134
Query: 126 ILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK------ 178
+ +KVV + G+SKGYGFV+F E N A+ ++NG + + + + K
Sbjct: 135 VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQ 194
Query: 179 -------------SERILPGP--------------DASYTNLYMKNLDLDITEALLKEKF 211
+ I P P D + T +Y+ NLDL+++E LK+ F
Sbjct: 195 QNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEELKQNF 254
Query: 212 SSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAE 271
FG+IVS+ + K GFV + A+ A++ M G LG +++ V+ + +
Sbjct: 255 LQFGEIVSVKVHP-----GKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGRPQTA 309
Query: 272 RERILNHQFEEKRKEQILKYKG 293
R+ + ++ + Q Y G
Sbjct: 310 RQDVPGGWGQQVDQSQWSAYYG 331
Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 133/306 (43%), Gaps = 36/306 (11%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI 157
+ +++ +L VD + L F G ++S K++ G+ +GYGF++F S +A +
Sbjct: 14 VRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVL 73
Query: 158 EKLNGSTINDKQ----IYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSS 213
+ NG+ + + + F R GPD S +++ +L D+T+ LL+E F +
Sbjct: 74 QTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHS---IFVGDLAPDVTDYLLQETFRT 130
Query: 214 -FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAE 271
+G + + D N G SKG+GFV + + + RA+ MNG ++ + ++ A K
Sbjct: 131 HYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 190
Query: 272 RERILNHQFEEKRKEQI---------------------LKYKGSNIYVKNIDDNVSDEEL 310
N + + IYV N+D NVS+EEL
Sbjct: 191 TGYQQNPYAAVVAAAPVPKAIYPVPAYTTAPVNTVPPEYDVNNTTIYVGNLDLNVSEEEL 250
Query: 311 RDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
+ +F G I S KV K GFV F A +A+ G + + + V+ +
Sbjct: 251 KQNFLQFGEIVSVKVHP-----GKACGFVQFGARASAEEAIQKMQGKILGQQVIRVSWGR 305
Query: 371 RKEDRQ 376
+ RQ
Sbjct: 306 PQTARQ 311
>Medtr3g101370.1 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 420
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/286 (28%), Positives = 148/286 (51%), Gaps = 37/286 (12%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VGDLH + + LH FA + S++V R+ T ++ YG+V F S A + ++
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 74 NHSMLNG--KVIRVLWS--------RRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIFK 121
++ + R+ W+ R D PD+ ++FV +LA V + L E F
Sbjct: 155 AGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDL------SIFVGDLAADVTDTMLLETFS 208
Query: 122 -KYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFV-KK 178
KY ++ ++KVV A+ G+SKGYGFV+F + + A+ ++NG + + + +G +K
Sbjct: 209 DKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRK 268
Query: 179 SERILPG-----------PDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN 227
S G D++ T +++ LD T L++ FS +G+IVS+ I
Sbjct: 269 SSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIP---- 324
Query: 228 GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERE 273
+ KG GFV + N ++A+ AL+ +NG+ +G + + ++ + A ++
Sbjct: 325 -VGKGCGFVQFANRNNAEEALQKLNGTTVGKQTVRLSWGRNPANKQ 369
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 22/266 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
++V +L +D + L F G I S KV+ +++GYGFV+F S +A ++
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 161 NGSTI-NDKQIYVGRFV-------KKSERILPGPDASYTNLYMKNLDLDITEALLKEKFS 212
G + N +Q + + K+S+ + PD S +++ +L D+T+ +L E FS
Sbjct: 155 AGMLMPNTEQPFRLNWATFSTGDHKRSDNV---PDLS---IFVGDLAADVTDTMLLETFS 208
Query: 213 S-FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
+ + + + D N G SKG+GFV + + + +AL MNG S+ + + A +
Sbjct: 209 DKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPRK 268
Query: 271 ERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEK 330
Q + + I+V +D + + E+LR FS G I S K+
Sbjct: 269 SSGYQQGGQSNGTPSQSDTDSTNTTIFVGGLDPSATAEDLRQPFSQYGEIVSVKIP---- 324
Query: 331 GISKGFGFVCFSTPEEANKAVNTFHG 356
+ KG GFV F+ A +A+ +G
Sbjct: 325 -VGKGCGFVQFANRNNAEEALQKLNG 349
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
L++ +L + E L F+S G+I S+ + ++ + ++G+GFV + + A++ L+
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
G + + ++ + KR + + +I+V ++ +V+D L
Sbjct: 155 AG-------MLMPNTEQPFRLNWATFSTGDHKRSDNVPDL---SIFVGDLAADVTDTMLL 204
Query: 312 DHFS-ACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
+ FS S+ +AKV+ D G SKG+GFV F E +KA+N +G + + + A
Sbjct: 205 ETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAA 264
Query: 370 QRKE 373
++
Sbjct: 265 TPRK 268
>Medtr4g086600.1 | polyadenylate-binding protein RBP47B | HC |
chr4:33938062-33942519 | 20130731
Length = 454
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 145/292 (49%), Gaps = 48/292 (16%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++GDLH + + LH+ FA +AS +V R+ TG+S YG+V F + A + ++
Sbjct: 118 IWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVLQNF 177
Query: 74 NHSML--NGKVIRVLWS----------RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIF- 120
N +M+ + R+ W+ RR + +VFV +LA V + L+E F
Sbjct: 178 NGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDL--SVFVGDLAIDVTDAMLQETFA 235
Query: 121 KKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKS 179
K+ +I +KVV+ ++ G+SKGYGFV+F E A+ ++NG + + + VG K
Sbjct: 236 SKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPKK 295
Query: 180 ER-----------ILPG----------------PDASYTNLYMKNLDLDITEALLKEKFS 212
+L G D++ T +++ LD DI++ L++ F
Sbjct: 296 TYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDLRQPFL 355
Query: 213 SFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVA 264
FG ++S+ I + KG GFV + +A+ A++ +NG+ +G + + ++
Sbjct: 356 QFGDVISVKIP-----VGKGCGFVQLADRKNAEEAIQGLNGTVIGKQTVRLS 402
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/286 (26%), Positives = 132/286 (46%), Gaps = 37/286 (12%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
I +++ +L +D + L F G + S+KV+ G+S+GYGFV+F + A +
Sbjct: 115 IRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEFYTRAMAEKVL 174
Query: 158 EKLNGSTI-NDKQIYVGRFVKKSERILPGPD-----ASYTNLYMKNLDLDITEALLKEKF 211
+ NG+ + N Q + + S G S ++++ +L +D+T+A+L+E F
Sbjct: 175 QNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAIDVTDAMLQETF 234
Query: 212 SS-FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
+S F I + D N G SKG+GFV + + + RA+ MNG S+ + V A K
Sbjct: 235 ASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSRPMRVGVATPK 294
Query: 270 AERERILNHQFEEKRKEQILKYKG-------------------SNIYVKNIDDNVSDEEL 310
+ + + + +L G + I+V +D ++SDE+L
Sbjct: 295 ----KTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNTTIFVGGLDSDISDEDL 350
Query: 311 RDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG 356
R F G + S K+ + KG GFV + + A +A+ +G
Sbjct: 351 RQPFLQFGDVISVKIP-----VGKGCGFVQLADRKNAEEAIQGLNG 391
>Medtr2g022950.1 | polyadenylate-binding protein RBP47B | HC |
chr2:7987418-7992129 | 20130731
Length = 401
Score = 107 bits (266), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/288 (26%), Positives = 142/288 (49%), Gaps = 39/288 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L+ F L SV+V R+ T +S YG++ F + A + ++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 74 NHSML--NGKVIRVLW---------SRRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIF 120
N +++ G+ R+ W SR+D PD +FV +LA V L+E F
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPD------HTIFVGDLAADVTDYLLQETF 175
Query: 121 K-KYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK 178
+ +Y ++ +KVV+ G+SKGYGFV+F E A+ ++ G + + + +G K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
Query: 179 SERILPGPDASY-------------TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD 225
+ P ASY T +++ NLD ++T+ L++ F+ +G++V + I
Sbjct: 236 NPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIPS- 294
Query: 226 ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERE 273
K GFV + + A+ A+ +NG+ LG + + ++ + + ++
Sbjct: 295 ----GKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQ 338
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 22/292 (7%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
+ +++ +L +D + L F G + S KV+ +S+GYGF++F + +A +
Sbjct: 59 VRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVL 118
Query: 158 EKLNGSTI-NDKQIYVGRFV-----KKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
+ NG+ + N Q Y + ++S R GPD + +++ +L D+T+ LL+E F
Sbjct: 119 QTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT---IFVGDLAADVTDYLLQETF 175
Query: 212 SS-FGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
+ + + + D G SKG+GFV + + + RA+ M G ++ + + A K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
Query: 270 ---AERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVM 326
A + ++ + E + I+V N+D NV+D+ LR F+ G + K+
Sbjct: 236 NPAATTQPKASYNPSGGQSEN--DPNNTTIFVGNLDPNVTDDHLRQVFTQYGELVHVKIP 293
Query: 327 KDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQ 378
++ GFV FS A +A+ +G + G+ + ++ + ++Q Q
Sbjct: 294 SGKR-----CGFVQFSDRSCAEEAIRVLNGTLLGGQNVRLSWGRTPSNKQTQ 340
>Medtr4g131970.1 | polyadenylate-binding protein RBP47C | HC |
chr4:55111286-55115662 | 20130731
Length = 411
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 144/287 (50%), Gaps = 38/287 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L++ F+ + SV+V R+ T +S YG++ F+S A + ++
Sbjct: 76 LWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTF 135
Query: 74 NHSML--NGKVIRVLWS-------RRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIFK- 121
N +++ G+ R+ W+ R D PD +FV +LA V L E+F+
Sbjct: 136 NGTIMPNGGQNFRLNWATFSSGEKRHDDSPDY------TIFVGDLAADVSDHHLTEVFRT 189
Query: 122 KYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK-- 178
+Y ++ +KVV+ G++KGYGFV+F E A+ ++ G + + + +G K
Sbjct: 190 RYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNL 249
Query: 179 ----SERILPGP--------DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE 226
S+ P D + T +++ NLD ++T+ LK+ F+ +G++V + I
Sbjct: 250 GTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPS-- 307
Query: 227 NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERE 273
K GFV + + A+ AL +NG+ LG + + ++ + A ++
Sbjct: 308 ---GKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQ 351
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 134/289 (46%), Gaps = 17/289 (5%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
+ +++ +L +D + L F G + S KV+ +S+GYGF++F S A +
Sbjct: 73 VKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVL 132
Query: 158 EKLNGSTINDK----QIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSS 213
+ NG+ + + ++ F +R PD YT +++ +L D+++ L E F +
Sbjct: 133 QTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPD--YT-IFVGDLAADVSDHHLTEVFRT 189
Query: 214 -FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK-- 269
+ + + D G +KG+GFV + + + RA+ M G ++ + + A K
Sbjct: 190 RYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNL 249
Query: 270 AERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE 329
+ ++Q + + + I+V N+D NV+DE L+ F+ G + K+ +
Sbjct: 250 GTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGK 309
Query: 330 KGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQ 378
+ GFV F+ A +A+ +G + G+ + ++ + ++Q Q
Sbjct: 310 R-----CGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQ 353
>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:29411645-29406062 | 20130731
Length = 379
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 100/171 (58%), Gaps = 7/171 (4%)
Query: 15 YVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVKN 74
YVG+L P IS+ L + F + + +V V +D T + YG+V F S +DA AI+V N
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 75 HSMLNGKVIRVLWSRRDPDVRKSC-IG-NVFVKNLAESVDSSGLEEIFKKYGNILSSKVV 132
L GK IRV + +D +KS +G N+F+ NL VD L + F +G I+++ +
Sbjct: 88 MIKLYGKPIRVNKASQD---KKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKI 144
Query: 133 M--ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSER 181
M D G S+G+GF+ ++S E++++AIE +NG + ++QI V KK +
Sbjct: 145 MRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTK 195
Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/257 (29%), Positives = 129/257 (50%), Gaps = 37/257 (14%)
Query: 194 YMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMN 252
Y+ NLD I+E LL E F G +V++ + KD +G+GFV + + +DA A++ +N
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Query: 253 GSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRD 312
+L K + V +A ++K+ + G+N+++ N+D +V ++ L D
Sbjct: 88 MIKLYGKPIRVNKAS-------------QDKKSLDV----GANLFIGNLDPDVDEKLLYD 130
Query: 313 HFSACGSI-TSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
FSA G I T+ K+M+D + G S+GFGF+ + + E ++ A+ +G + + V+ A
Sbjct: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
Query: 371 RKEDR------QAQLQLQYAQKIAGLAGPSTAIIPGGYPPFYYTATGVVPHVPHRAGLMY 424
+K+ + A+ L + A + P T G PP +P+ P G +
Sbjct: 191 KKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASG--PP-------SLPNAPQANGTIP 241
Query: 425 QPLAVRPGWRANGFAPP 441
P+ RP ANG APP
Sbjct: 242 APVPPRP--FANGVAPP 256
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/187 (35%), Positives = 106/187 (56%), Gaps = 20/187 (10%)
Query: 103 FVKNLAESVDSSGLEEIFKKYGNILSSKVVMADD---GKSKGYGFVQFESEESANAAIEK 159
+V NL + L E+F + G +++ V + D + +GYGFV+F SEE A+ AI+
Sbjct: 28 YVGNLDPQISEELLWELFVQAGPVVN--VYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
Query: 160 LNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVS 219
LN + K I V + + + + G NL++ NLD D+ E LL + FS+FG IV+
Sbjct: 86 LNMIKLYGKPIRVNKASQDKKSLDVG-----ANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
Query: 220 -LAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK---KAER-- 272
I +D + G S+GFGF++Y++ + + A+EAMNG L ++ + V+ A K K ER
Sbjct: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHG 200
Query: 273 ---ERIL 276
ER+L
Sbjct: 201 TPAERVL 207
>Medtr4g124940.1 | nucleolysin TIAR-like protein | HC |
chr4:51822192-51817182 | 20130731
Length = 404
Score = 100 bits (249), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/333 (25%), Positives = 146/333 (43%), Gaps = 47/333 (14%)
Query: 63 PQDAMQAIEVKNHSM------LNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGL 116
PQ Q ++ HS+ + ++ +L P S +V+V N+ V L
Sbjct: 3 PQKFRQNPMIEQHSLYQHPALITPQIEPILSGNLPPGFDSSTCRSVYVGNIHPQVSEPLL 62
Query: 117 EEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFV 176
+E+F G + K++ + YGFV + SA AI LNG I + I V
Sbjct: 63 QELFSSAGALEGCKLIRKEKSS---YGFVDYFDRSSAAIAIVTLNGRNIFGQSIKVNWAY 119
Query: 177 KKSERILPGPDAS-YTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFG 234
+ +R D S + ++++ +L ++T+A L FS++ + D+ G S+GFG
Sbjct: 120 TRGQR----EDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFG 175
Query: 235 FVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKG- 293
FV++ N +A+ A+ + G LGS+ + A K A +N + + + +++
Sbjct: 176 FVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGAN----MNGENQSSESKSVVELTSG 231
Query: 294 --------------------SNIYVKNIDDNVSDEELRDHFSA--CGSITSAKVMKDEKG 331
+ +YV N+ V+ +L HF A G+I +V +D
Sbjct: 232 TSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDVRVQRD--- 288
Query: 332 ISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
KGFGFV +ST EA A+ + GKP+
Sbjct: 289 --KGFGFVRYSTHGEAALAIQMGNTRFLFGKPI 319
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 125/288 (43%), Gaps = 42/288 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG++HP +S+ L + F+ L ++ R + YG+V++ A AI
Sbjct: 48 VYVGNIHPQVSEPLLQELFSSAGALEGCKLIRKEKSS----YGFVDYFDRSSAAIAIVTL 103
Query: 74 NHSMLNGKVIRVLWS-RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVV 132
N + G+ I+V W+ R S ++FV +L+ V + L F Y + ++V+
Sbjct: 104 NGRNIFGQSIKVNWAYTRGQREDTSGHFHIFVGDLSPEVTDATLYACFSAYSSCSDARVM 163
Query: 133 M-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK-----------KSE 180
G+S+G+GFV F +++ A +AI L G + +QI K +S+
Sbjct: 164 WDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWATKGANMNGENQSSESK 223
Query: 181 RIL------------------PGPDASYTNLYMKNLDLDITEALLKEKFSSF--GKIVSL 220
++ P + YT +Y+ NL ++T L F + G I +
Sbjct: 224 SVVELTSGTSEEAQEMTSDDSPEKNPQYTTVYVGNLAPEVTSVDLHHHFHALGVGTIEDV 283
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
+ +D KGFGFV Y +A A++ N L K + + K
Sbjct: 284 RVQRD-----KGFGFVRYSTHGEAALAIQMGNTRFLFGKPIKCSWGSK 326
>Medtr3g109090.3 | nucleolysin TIAR-like protein | HC |
chr3:50426665-50437301 | 20130731
Length = 424
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 131/289 (45%), Gaps = 43/289 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG++H +++D L + F LA ++ R + YG+V++ A AI
Sbjct: 46 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 101
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIG--NVFVKNLAESVDSSGLEEIFKKYGNILSSKV 131
+ L G+ ++V W+ + R+ G NVFV +L+ V + L F Y S
Sbjct: 102 HGRQLYGQALKVNWAYANSS-REDTSGHFNVFVGDLSPEVTDATLFACFSVY-TTCSDAR 159
Query: 132 VMAD--DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKS------ERI- 182
VM D G+SKGYGFV F + A +AI + G + ++QI K + E+I
Sbjct: 160 VMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIN 219
Query: 183 -----------------------LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVS 219
P + SYT +Y+ NL D+T+A L +F + G V
Sbjct: 220 DSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGV- 278
Query: 220 LAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
L + ++G KGFGFV Y ++A A++ NG + K + + K
Sbjct: 279 LEEVRVQSG--KGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSK 325
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 36/296 (12%)
Query: 92 PDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEE 151
P S +V+V N+ +V L E+F+ G + K++ + YGFV +
Sbjct: 36 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKE---KSSYGFVDYHDRA 92
Query: 152 SANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDAS-YTNLYMKNLDLDITEALLKEK 210
SA AI L+G + + + V S R D S + N+++ +L ++T+A L
Sbjct: 93 SAALAIMTLHGRQLYGQALKVNWAYANSSR----EDTSGHFNVFVGDLSPEVTDATLFAC 148
Query: 211 FSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
FS + + D + G SKG+GFV++ + DA+ A+ M G LG++ + A K
Sbjct: 149 FSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKG 208
Query: 270 A----ERERILNHQ----------------FEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
A E+I + Q E E Y + +YV N+ +V+ E
Sbjct: 209 AGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY--TTVYVGNLPHDVTQAE 266
Query: 310 LRDHFSACGSITSAKVMKDEKGIS-KGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
L F A G A V+++ + S KGFGFV ++T EEA A+ +G GK +
Sbjct: 267 LHCQFHALG----AGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTM 318
>Medtr3g109090.1 | nucleolysin TIAR-like protein | HC |
chr3:50427006-50436985 | 20130731
Length = 440
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 131/289 (45%), Gaps = 43/289 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG++H +++D L + F LA ++ R + YG+V++ A AI
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIG--NVFVKNLAESVDSSGLEEIFKKYGNILSSKV 131
+ L G+ ++V W+ + R+ G NVFV +L+ V + L F Y S
Sbjct: 118 HGRQLYGQALKVNWAYAN-SSREDTSGHFNVFVGDLSPEVTDATLFACFSVY-TTCSDAR 175
Query: 132 VMAD--DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKS------ERI- 182
VM D G+SKGYGFV F + A +AI + G + ++QI K + E+I
Sbjct: 176 VMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIN 235
Query: 183 -----------------------LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVS 219
P + SYT +Y+ NL D+T+A L +F + G V
Sbjct: 236 DSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGV- 294
Query: 220 LAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
L + ++G KGFGFV Y ++A A++ NG + K + + K
Sbjct: 295 LEEVRVQSG--KGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSK 341
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 36/296 (12%)
Query: 92 PDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEE 151
P S +V+V N+ +V L E+F+ G + K++ + YGFV +
Sbjct: 52 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS---YGFVDYHDRA 108
Query: 152 SANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDAS-YTNLYMKNLDLDITEALLKEK 210
SA AI L+G + + + V S R D S + N+++ +L ++T+A L
Sbjct: 109 SAALAIMTLHGRQLYGQALKVNWAYANSSR----EDTSGHFNVFVGDLSPEVTDATLFAC 164
Query: 211 FSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
FS + + D + G SKG+GFV++ + DA+ A+ M G LG++ + A K
Sbjct: 165 FSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKG 224
Query: 270 A----ERERILNHQ----------------FEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
A E+I + Q E E Y + +YV N+ +V+ E
Sbjct: 225 AGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY--TTVYVGNLPHDVTQAE 282
Query: 310 LRDHFSACGSITSAKVMKDEKGIS-KGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
L F A G A V+++ + S KGFGFV ++T EEA A+ +G GK +
Sbjct: 283 LHCQFHALG----AGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTM 334
>Medtr3g109090.2 | nucleolysin TIAR-like protein | HC |
chr3:50426599-50437301 | 20130731
Length = 440
Score = 100 bits (249), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 131/289 (45%), Gaps = 43/289 (14%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG++H +++D L + F LA ++ R + YG+V++ A AI
Sbjct: 62 VYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS----YGFVDYHDRASAALAIMTL 117
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIG--NVFVKNLAESVDSSGLEEIFKKYGNILSSKV 131
+ L G+ ++V W+ + R+ G NVFV +L+ V + L F Y S
Sbjct: 118 HGRQLYGQALKVNWAYAN-SSREDTSGHFNVFVGDLSPEVTDATLFACFSVY-TTCSDAR 175
Query: 132 VMAD--DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKS------ERI- 182
VM D G+SKGYGFV F + A +AI + G + ++QI K + E+I
Sbjct: 176 VMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKIN 235
Query: 183 -----------------------LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVS 219
P + SYT +Y+ NL D+T+A L +F + G V
Sbjct: 236 DSQNAVVLTNGSSDGGQDNSNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGV- 294
Query: 220 LAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
L + ++G KGFGFV Y ++A A++ NG + K + + K
Sbjct: 295 LEEVRVQSG--KGFGFVRYNTHEEAAMAIQMANGRPVRGKTMKCSWGSK 341
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/296 (28%), Positives = 134/296 (45%), Gaps = 36/296 (12%)
Query: 92 PDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEE 151
P S +V+V N+ +V L E+F+ G + K++ + YGFV +
Sbjct: 52 PGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSS---YGFVDYHDRA 108
Query: 152 SANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDAS-YTNLYMKNLDLDITEALLKEK 210
SA AI L+G + + + V S R D S + N+++ +L ++T+A L
Sbjct: 109 SAALAIMTLHGRQLYGQALKVNWAYANSSR----EDTSGHFNVFVGDLSPEVTDATLFAC 164
Query: 211 FSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
FS + + D + G SKG+GFV++ + DA+ A+ M G LG++ + A K
Sbjct: 165 FSVYTTCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKG 224
Query: 270 A----ERERILNHQ----------------FEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
A E+I + Q E E Y + +YV N+ +V+ E
Sbjct: 225 AGGSSNEEKINDSQNAVVLTNGSSDGGQDNSNEDAPENNPSY--TTVYVGNLPHDVTQAE 282
Query: 310 LRDHFSACGSITSAKVMKDEKGIS-KGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
L F A G A V+++ + S KGFGFV ++T EEA A+ +G GK +
Sbjct: 283 LHCQFHALG----AGVLEEVRVQSGKGFGFVRYNTHEEAAMAIQMANGRPVRGKTM 334
>Medtr8g022050.1 | nucleolysin TIAR-like protein | HC |
chr8:7704241-7709952 | 20130731
Length = 427
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/290 (25%), Positives = 126/290 (43%), Gaps = 45/290 (15%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG++H +++ L + FA + ++ R + YG++++ + A AI
Sbjct: 64 VYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSS----YGFIHYFDRRSAALAILTL 119
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIG--NVFVKNLAESVDSSGLEEIFKKYGNILSSKV 131
N L G+ I+V W+ R+ G N+FV +L+ V + L F Y + ++V
Sbjct: 120 NGRHLFGQPIKVNWAYASGQ-REDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARV 178
Query: 132 VM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERI-------- 182
+ G+S+G+GFV F S++ A +AI L G + +QI K + I
Sbjct: 179 MWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDS 238
Query: 183 ---------------------LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK--IVS 219
+P + YT +Y+ NL + T+ L F + G I
Sbjct: 239 KSVVELTNGSSEDGKEISSNDVPENNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEE 298
Query: 220 LAISKDENGMSKGFGFVNYENPDDAKRALEAMNG-SQLGSKILYVARAQK 268
+ + +D KGFGFV Y +A A++ N S L KI+ + K
Sbjct: 299 VRVQRD-----KGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSK 343
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 128/283 (45%), Gaps = 37/283 (13%)
Query: 92 PDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEE 151
P S +V+V N+ V L+E+F G + K+ + YGF+ +
Sbjct: 54 PGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKE---KSSYGFIHYFDRR 110
Query: 152 SANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDAS-YTNLYMKNLDLDITEALLKEK 210
SA AI LNG + + I V +R D S + N+++ +L ++T+A L
Sbjct: 111 SAALAILTLNGRHLFGQPIKVNWAYASGQR----EDTSGHYNIFVGDLSPEVTDATLFAC 166
Query: 211 FSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
FS + + D+ G S+GFGFV++ + DA+ A+ + G LGS+ + A K
Sbjct: 167 FSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTGKWLGSRQIRCNWATKG 226
Query: 270 A----ERE--------RILNHQFEEKRK-------EQILKYKGSNIYVKNIDDNVSDEEL 310
A E++ + N E+ ++ E +Y + +YV N+ + +L
Sbjct: 227 AGGIEEKQNSDSKSVVELTNGSSEDGKEISSNDVPENNPQY--TTVYVGNLGSEATQLDL 284
Query: 311 RDHFSACGS--ITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
HF A G+ I +V +D KGFGFV +ST EA A+
Sbjct: 285 HRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAI 322
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 86/180 (47%), Gaps = 20/180 (11%)
Query: 179 SERILPGPDASYT-NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVN 237
S + PG D S ++Y+ N+ +TE LL+E F+ G + + + E +GF++
Sbjct: 49 SGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEK---SSYGFIH 105
Query: 238 YENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIY 297
Y + A A+ +NG L + + V A +RE H NI+
Sbjct: 106 YFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHY---------------NIF 150
Query: 298 VKNIDDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHG 356
V ++ V+D L FS S + A+VM D+K G S+GFGFV F + ++A A+N G
Sbjct: 151 VGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQSAINDLTG 210
>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
chr7:43324307-43322087 | 20130731
Length = 318
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
LY+ NL +T + L + F+ G +VS+ I D S+GF FV ++ ++AK A+
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGS--NIYVKNIDDNVSDEE 309
+GSQ+G + V + ER++ Q K + + S IY N+ ++ ++
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGGERLVMGQ---KVRNSYRGFVDSPHKIYAGNLGWGMNSQD 227
Query: 310 LRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVAL 368
LRD F + AK++ + + G S+GFGFV F T E A+N +G G+PL + L
Sbjct: 228 LRDAFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPLRLNL 287
Query: 369 A 369
A
Sbjct: 288 A 288
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVG+L ++ +QL D FAE + SV + D T RS + +V S ++A +AI +
Sbjct: 111 LYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKEAIRMF 170
Query: 74 NHSMLNGKVIRVLWSR---------RDPDVRKSCIG------NVFVKNLAESVDSSGLEE 118
+ S + G+ +V + VR S G ++ NL ++S L +
Sbjct: 171 DGSQVGGRSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGMNSQDLRD 230
Query: 119 IFKKYGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK 177
F + +L +K++ D+G+S+G+GFV FE+ E AA+ +NG + + + R
Sbjct: 231 AFDEQPGLLGAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNGVEVQGRPL---RLNL 287
Query: 178 KSERILPGP 186
+ R P P
Sbjct: 288 AAARTSPSP 296
>Medtr4g104470.1 | 31 kDa ribonucleoprotein | HC |
chr4:43224367-43221650 | 20130731
Length = 300
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 90/175 (51%), Gaps = 4/175 (2%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NL VDS L ++F++ G + ++V+ D +S+G+GFV + E A+ K
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNL--YMKNLDLDITEALLKEKFSSFGKIV 218
+G ++ + + V + + L P + L Y+ NL D+ + L++ FS GK+
Sbjct: 184 SGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVE 243
Query: 219 SLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAER 272
S + D E G S+GFGFV N + A+ A++G + + V A+++ R
Sbjct: 244 SAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEERPRR 298
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 87/189 (46%), Gaps = 20/189 (10%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKI-VSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
+++ NL D+ L + F G + ++ I + S+GFGFV ++ +RA+
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 252 NGSQLGSKILYV----ARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSD 307
+G +L ++L V R + + R N G YV N+ +V +
Sbjct: 184 SGFELDGRLLTVNKAAPRGTPRLRQPRTFNS--------------GLRAYVGNLPWDVDN 229
Query: 308 EELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
L FS G + SA+V+ D E G S+GFGFV S E N A+ G F+G+ + V
Sbjct: 230 SSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
Query: 367 ALAQRKEDR 375
+A+ + R
Sbjct: 290 NVAEERPRR 298
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 87/166 (52%), Gaps = 7/166 (4%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG+L D+ +L F + + V + T RS +G+V + ++ +A+
Sbjct: 124 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 183
Query: 74 NHSMLNGKVIRV--LWSRRDPDVRKSCIGN----VFVKNLAESVDSSGLEEIFKKYGNIL 127
+ L+G+++ V R P +R+ N +V NL VD+S LE++F ++G +
Sbjct: 184 SGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVE 243
Query: 128 SSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
S++VV + G+S+G+GFV +E N AI L+G + N + I V
Sbjct: 244 SAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRV 289
>Medtr3g075500.1 | 31 kDa ribonucleoprotein | HC |
chr3:34381451-34378914 | 20130731
Length = 291
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 7/178 (3%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEKL 160
+FV N VDS L +F + G + ++V+ S+G+GFV + E A +A+EK
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYT-----NLYMKNLDLDITEALLKEKFSSFG 215
NG N + + V + K R A T +Y+ NL ++ + L++ FS G
Sbjct: 171 NGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEHG 230
Query: 216 KIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAER 272
KIVS + D E G S+GFGFV + + A+ A++G L + + V+ A+ + R
Sbjct: 231 KIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPRR 288
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 89/186 (47%), Gaps = 11/186 (5%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKI-VSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L++ N D+ L F G + ++ I + +S+GFGFV ++A+ A+E
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 252 NGSQLGSKILYVARAQKKAER-ERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
NG + L V +A K R ER + + E +L+ IYV N+ V + L
Sbjct: 171 NGYDYNGRSLVVNKASPKGSRPERT---ERAPRTFEPVLR-----IYVANLAWEVDNSRL 222
Query: 311 RDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
FS G I SA+V+ D E G S+GFGFV S E N A+ G G+ + V++A
Sbjct: 223 EQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVA 282
Query: 370 QRKEDR 375
+ + R
Sbjct: 283 EDRPRR 288
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 85/170 (50%), Gaps = 12/170 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG+ D+ +L F + + V + T S +G+V + ++A A+E
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 74 NHSMLNGKVI----------RVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKY 123
N NG+ + R + R P + + ++V NLA VD+S LE++F ++
Sbjct: 171 NGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVL-RIYVANLAWEVDNSRLEQVFSEH 229
Query: 124 GNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
G I+S++VV + G+S+G+GFV E N AI L+G ++ + I V
Sbjct: 230 GKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRV 279
>Medtr1g020080.2 | polyadenylate-binding protein RBP47C | HC |
chr1:6171590-6176186 | 20130731
Length = 309
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 95/182 (52%), Gaps = 12/182 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDLH + ++ LH FA + SV+V R+ +G S YG+ F S A + ++
Sbjct: 99 LWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQ-- 156
Query: 74 NHS---MLNG-KVIRVLW---SRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIF-KKYGN 125
N++ M N + R+ W S D ++FV +LA V S L E F Y +
Sbjct: 157 NYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPS 216
Query: 126 ILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFV-KKSERIL 183
+ ++KVV A+ G+SKGYGFV+F E + A+ ++NG + + + +G +KS
Sbjct: 217 VKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPRKSSGHQ 276
Query: 184 PG 185
PG
Sbjct: 277 PG 278
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEK 159
+++ +L +D S L F G I S KV+ G S+GYGF +F S +A ++
Sbjct: 98 TLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQN 157
Query: 160 LNGSTI-NDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSS-FGKI 217
G + N Q + + S + + ++++ +L D+T+++L E FSS + +
Sbjct: 158 YAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVLHETFSSSYPSV 217
Query: 218 VSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
+ + D N G SKG+GFV + + + +A+ MNG S+ + + A +
Sbjct: 218 KAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGAATPR 270
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 93/185 (50%), Gaps = 14/185 (7%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEA 250
L++ +L + E+ L F+S G+I S+ + ++++ G+S+G+GF + + A++ L+
Sbjct: 98 TLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFSHATAEKVLQN 157
Query: 251 MNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
G IL Q A R +K + + +I+V ++ +V+D L
Sbjct: 158 YAG------ILMPNADQ--AFRLNWATFSTGDKGSDNVTDL---SIFVGDLAADVTDSVL 206
Query: 311 RDHFSAC-GSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVAL 368
+ FS+ S+ +AKV+ D G SKG+GFV F E ++A+ +G +P+ +
Sbjct: 207 HETFSSSYPSVKAAKVVYDANTGRSKGYGFVRFGDESERSQAMTQMNGVYCSSRPMRIGA 266
Query: 369 AQRKE 373
A ++
Sbjct: 267 ATPRK 271
>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700218-24705084 | 20130731
Length = 311
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG+L +S +QL F E N+ SV + D T RS + +V + +DA +AI +
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGN-----------VFVKNLAESVDSSGLEEIFKK 122
+ + + G+ I+V + ++ +G+ ++ NL + S L + F K
Sbjct: 170 DGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAK 229
Query: 123 YGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQI 170
+LS+KVV ++GKS+GYGFV FE+ E A+ +NG + + +
Sbjct: 230 QPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPL 278
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 11/175 (6%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKL 160
+FV NL S+ SS L ++F + GN++S +++ D +S+G+ FV + E A AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 161 NGSTINDKQI--------YVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFS 212
+G+T+ + I VG+ V+ D+ + +Y NL D+T L++ F+
Sbjct: 170 DGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH-KIYAGNLGWDMTSQYLRKAFA 228
Query: 213 -SFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARA 266
G + + + + NG S+G+GFV++E +D + AL AMNG ++ + L + A
Sbjct: 229 KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLA 283
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 27/189 (14%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ NL ++ + L + F G +VS+ I D+ S+GF FV N +DA+ A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEE-----KRKEQILKYKG-----SNIYVKNI 301
+G+ +G + + V F E KR + Y+G IY N+
Sbjct: 170 DGTTVGGRAIKV---------------NFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNL 214
Query: 302 DDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
+++ + LR F+ + SAKV+ + G S+G+GFV F T E+ A++ +G
Sbjct: 215 GWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQ 274
Query: 361 GKPLYVALA 369
G+PL + LA
Sbjct: 275 GRPLRLKLA 283
>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:24700221-24703822 | 20130731
Length = 311
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 87/169 (51%), Gaps = 12/169 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG+L +S +QL F E N+ SV + D T RS + +V + +DA +AI +
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGN-----------VFVKNLAESVDSSGLEEIFKK 122
+ + + G+ I+V + ++ +G+ ++ NL + S L + F K
Sbjct: 170 DGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGWDMTSQYLRKAFAK 229
Query: 123 YGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQI 170
+LS+KVV ++GKS+GYGFV FE+ E A+ +NG + + +
Sbjct: 230 QPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPL 278
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 94/175 (53%), Gaps = 11/175 (6%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKL 160
+FV NL S+ SS L ++F + GN++S +++ D +S+G+ FV + E A AI
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 161 NGSTINDKQI--------YVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFS 212
+G+T+ + I VG+ V+ D+ + +Y NL D+T L++ F+
Sbjct: 170 DGTTVGGRAIKVNFPEVPIVGKRVQMGSTYRGYVDSPH-KIYAGNLGWDMTSQYLRKAFA 228
Query: 213 -SFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARA 266
G + + + + NG S+G+GFV++E +D + AL AMNG ++ + L + A
Sbjct: 229 KQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQGRPLRLKLA 283
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 27/189 (14%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ NL ++ + L + F G +VS+ I D+ S+GF FV N +DA+ A+
Sbjct: 110 LFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVEDAEEAIRMF 169
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEE-----KRKEQILKYKG-----SNIYVKNI 301
+G+ +G + + V F E KR + Y+G IY N+
Sbjct: 170 DGTTVGGRAIKV---------------NFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNL 214
Query: 302 DDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
+++ + LR F+ + SAKV+ + G S+G+GFV F T E+ A++ +G
Sbjct: 215 GWDMTSQYLRKAFAKQPGLLSAKVVYERNNGKSRGYGFVSFETAEDVEVALSAMNGVEVQ 274
Query: 361 GKPLYVALA 369
G+PL + LA
Sbjct: 275 GRPLRLKLA 283
>Medtr4g052940.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 48/349 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDG-KSKGYGFVQFESEESANAAIEKL 160
V+V + S L+E ++ G ++ +++ D ++KG+ FV + + E A+ AIE+L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVS 219
N + + GR +K S + L++ N+ E LK+ + G + +
Sbjct: 172 NNTE------FKGRKIKCST------SQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTA 219
Query: 220 LAISKDENGMS--KGFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERERI 275
+ + KD +S +GF F++Y N A+ + M +LG V+ A
Sbjct: 220 VELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA--------- 270
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ K + + +YVKN+ NV+ E+L+ F G IT + + G K
Sbjct: 271 -----DPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKN 325
Query: 336 -FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPS 394
GFV F+ A KA+ + G+ L +LA+ + D++A + Q
Sbjct: 326 RIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAVVSNTQTQ--------- 376
Query: 395 TAIIPGGYPPFYYTATGVVPHVPHRAGL----MYQPLAVRPGWRANGFA 439
++P PP Y G P+ AG + QPL PG G A
Sbjct: 377 -GLLPSYPPPVGYGLVG-NPYGALGAGYGAPGLAQPLMYGPGQTPGGMA 423
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG + D L + + VR+ + + + +V + + + A +AIE
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYG-NILSSKVV 132
N++ G+ I+ S+ +F+ N+ S L+++ G + + ++V
Sbjct: 172 NNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELV 223
Query: 133 --MADDGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILPGPDA 188
M + ++G+ F+ + + + A +K+ + + D V K+ D+
Sbjct: 224 KDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNS------DS 277
Query: 189 SYTN----LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG-FGFVNYENPDD 243
S ++ +Y+KNL ++T+ LK+ F GKI + + ++G K GFV++ +
Sbjct: 278 SASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSN 337
Query: 244 AKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
A +AL+ +L + L + A+ +A+++ ++++
Sbjct: 338 AMKALKNTERYELDGQNLECSLAKPQADQKAVVSN 372
>Medtr4g052940.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 48/349 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDG-KSKGYGFVQFESEESANAAIEKL 160
V+V + S L+E ++ G ++ +++ D ++KG+ FV + + E A+ AIE+L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVS 219
N + + GR +K S + L++ N+ E LK+ + G + +
Sbjct: 172 NNTE------FKGRKIKCST------SQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTA 219
Query: 220 LAISKDENGMS--KGFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERERI 275
+ + KD +S +GF F++Y N A+ + M +LG V+ A
Sbjct: 220 VELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA--------- 270
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ K + + +YVKN+ NV+ E+L+ F G IT + + G K
Sbjct: 271 -----DPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKN 325
Query: 336 -FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPS 394
GFV F+ A KA+ + G+ L +LA+ + D++A + Q
Sbjct: 326 RIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAVVSNTQTQ--------- 376
Query: 395 TAIIPGGYPPFYYTATGVVPHVPHRAGL----MYQPLAVRPGWRANGFA 439
++P PP Y G P+ AG + QPL PG G A
Sbjct: 377 -GLLPSYPPPVGYGLVG-NPYGALGAGYGAPGLAQPLMYGPGQTPGGMA 423
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG + D L + + VR+ + + + +V + + + A +AIE
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYG-NILSSKVV 132
N++ G+ I+ S+ +F+ N+ S L+++ G + + ++V
Sbjct: 172 NNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELV 223
Query: 133 --MADDGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILPGPDA 188
M + ++G+ F+ + + + A +K+ + + D V K+ D+
Sbjct: 224 KDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNS------DS 277
Query: 189 SYTN----LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG-FGFVNYENPDD 243
S ++ +Y+KNL ++T+ LK+ F GKI + + ++G K GFV++ +
Sbjct: 278 SASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSN 337
Query: 244 AKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
A +AL+ +L + L + A+ +A+++ ++++
Sbjct: 338 AMKALKNTERYELDGQNLECSLAKPQADQKAVVSN 372
>Medtr4g052940.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 504
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/349 (24%), Positives = 148/349 (42%), Gaps = 48/349 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDG-KSKGYGFVQFESEESANAAIEKL 160
V+V + S L+E ++ G ++ +++ D ++KG+ FV + + E A+ AIE+L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVS 219
N + + GR +K S + L++ N+ E LK+ + G + +
Sbjct: 172 NNTE------FKGRKIKCST------SQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTA 219
Query: 220 LAISKDENGMS--KGFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERERI 275
+ + KD +S +GF F++Y N A+ + M +LG V+ A
Sbjct: 220 VELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA--------- 270
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ K + + +YVKN+ NV+ E+L+ F G IT + + G K
Sbjct: 271 -----DPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKN 325
Query: 336 -FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPS 394
GFV F+ A KA+ + G+ L +LA+ + D++A + Q
Sbjct: 326 RIGFVHFAERSNAMKALKNTERYELDGQNLECSLAKPQADQKAVVSNTQTQ--------- 376
Query: 395 TAIIPGGYPPFYYTATGVVPHVPHRAGL----MYQPLAVRPGWRANGFA 439
++P PP Y G P+ AG + QPL PG G A
Sbjct: 377 -GLLPSYPPPVGYGLVG-NPYGALGAGYGAPGLAQPLMYGPGQTPGGMA 423
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 55/275 (20%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG + D L + + VR+ + + + +V + + + A +AIE
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYG-NILSSKVV 132
N++ G+ I+ S+ +F+ N+ S L+++ G + + ++V
Sbjct: 172 NNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELV 223
Query: 133 --MADDGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILPGPDA 188
M + ++G+ F+ + + + A +K+ + + D V K+ D+
Sbjct: 224 KDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNS------DS 277
Query: 189 SYTN----LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG-FGFVNYENPDD 243
S ++ +Y+KNL ++T+ LK+ F GKI + + ++G K GFV++ +
Sbjct: 278 SASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSN 337
Query: 244 AKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
A +AL+ +L + L + A+ +A+++ ++++
Sbjct: 338 AMKALKNTERYELDGQNLECSLAKPQADQKAVVSN 372
>Medtr3g101370.2 | polyadenylate-binding protein RBP47C | HC |
chr3:46662442-46658399 | 20130731
Length = 300
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 20/174 (11%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VGDLH + + LH FA + S++V R+ T ++ YG+V F S A + ++
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 74 NHSMLNG--KVIRVLWS--------RRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIFK 121
++ + R+ W+ R D PD+ ++FV +LA V + L E F
Sbjct: 155 AGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDL------SIFVGDLAADVTDTMLLETFS 208
Query: 122 -KYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVG 173
KY ++ ++KVV A+ G+SKGYGFV+F + + A+ ++NG + + + +G
Sbjct: 209 DKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIG 262
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 17/179 (9%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
++V +L +D + L F G I S KV+ +++GYGFV+F S +A ++
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 161 NGSTI-NDKQIYVGRFV-------KKSERILPGPDASYTNLYMKNLDLDITEALLKEKFS 212
G + N +Q + + K+S+ + PD S +++ +L D+T+ +L E FS
Sbjct: 155 AGMLMPNTEQPFRLNWATFSTGDHKRSDNV---PDLS---IFVGDLAADVTDTMLLETFS 208
Query: 213 S-FGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
+ + + + D N G SKG+GFV + + + +AL MNG S+ + + A +
Sbjct: 209 DKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAATPR 267
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
L++ +L + E L F+S G+I S+ + ++ + ++G+GFV + + A++ L+
Sbjct: 95 LWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTSHGTAEKVLQTY 154
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
G + + ++ + KR + + +I+V ++ +V+D L
Sbjct: 155 AG-------MLMPNTEQPFRLNWATFSTGDHKRSDNVPDL---SIFVGDLAADVTDTMLL 204
Query: 312 DHFS-ACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
+ FS S+ +AKV+ D G SKG+GFV F E +KA+N +G + + + A
Sbjct: 205 ETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVFCSSRAMRIGAA 264
Query: 370 QRKE 373
++
Sbjct: 265 TPRK 268
>Medtr2g022950.4 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991101 | 20130731
Length = 271
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 21/202 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L+ F L SV+V R+ T +S YG++ F + A + ++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 74 NHSML--NGKVIRVLW---------SRRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIF 120
N +++ G+ R+ W SR+D PD +FV +LA V L+E F
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPD------HTIFVGDLAADVTDYLLQETF 175
Query: 121 K-KYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK 178
+ +Y ++ +KVV+ G+SKGYGFV+F E A+ ++ G + + + +G K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
Query: 179 SERILPGPDASYTNLYMKNLDL 200
+ P L ++L+L
Sbjct: 236 NPAATTQPKGCQEALSSRSLEL 257
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
+ +++ +L +D + L F G + S KV+ +S+GYGF++F + +A +
Sbjct: 59 VRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVL 118
Query: 158 EKLNGSTI-NDKQIYVGRFV-----KKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
+ NG+ + N Q Y + ++S R GPD + +++ +L D+T+ LL+E F
Sbjct: 119 QTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT---IFVGDLAADVTDYLLQETF 175
Query: 212 SS-FGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
+ + + + D G SKG+GFV + + + RA+ M G ++ + + A K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr2g022950.3 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7991094 | 20130731
Length = 271
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 21/202 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L+ F L SV+V R+ T +S YG++ F + A + ++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 74 NHSML--NGKVIRVLW---------SRRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIF 120
N +++ G+ R+ W SR+D PD +FV +LA V L+E F
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPD------HTIFVGDLAADVTDYLLQETF 175
Query: 121 K-KYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK 178
+ +Y ++ +KVV+ G+SKGYGFV+F E A+ ++ G + + + +G K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
Query: 179 SERILPGPDASYTNLYMKNLDL 200
+ P L ++L+L
Sbjct: 236 NPAATTQPKGCQEALSSRSLEL 257
Score = 66.6 bits (161), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
+ +++ +L +D + L F G + S KV+ +S+GYGF++F + +A +
Sbjct: 59 VRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVL 118
Query: 158 EKLNGSTI-NDKQIYVGRFV-----KKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
+ NG+ + N Q Y + ++S R GPD + +++ +L D+T+ LL+E F
Sbjct: 119 QTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT---IFVGDLAADVTDYLLQETF 175
Query: 212 SS-FGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
+ + + + D G SKG+GFV + + + RA+ M G ++ + + A K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:37745112-37734961 | 20130731
Length = 865
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 106/207 (51%), Gaps = 23/207 (11%)
Query: 77 MLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKY---GNILSSKVVM 133
+L V R+ + DPD ++ ++FVKNL L E F ++ G ILS KV
Sbjct: 620 ILEKDVERISDADIDPDRIEA--RSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKK 677
Query: 134 -ADDGK--SKGYGFVQFESEESANAAIEKLNGSTINDKQIYV---------GRFVKKSER 181
+GK S G+GFV+F+S E+A + L G+ ++ + + + KK E+
Sbjct: 678 HLKNGKNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKNDDDKVQKKVEK 737
Query: 182 ILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENP 241
D S T L +KN+ + TE L++ FS FG+I SL + + G +GF FV Y
Sbjct: 738 -----DKSSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPM-KFGNHRGFAFVEYVTQ 791
Query: 242 DDAKRALEAMNGSQLGSKILYVARAQK 268
+A+ AL A++ + L + L + RA++
Sbjct: 792 QEAQNALTALSSTHLYGRHLVIERAKE 818
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 95/416 (22%), Positives = 165/416 (39%), Gaps = 74/416 (17%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+V +L ++ +L + F++F +++ + D T RS Y++F +P+ A +A+E
Sbjct: 331 LFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSAPEFAARALEES 390
Query: 74 NHSMLNGKVIRVL-------------------WSRRDPDVRKSC--IGNVFVKNLAESVD 112
++S+ G+++ V+ +R + RK+ G+ N
Sbjct: 391 DNSIFQGRLLHVMPAIPRHSNNEENKNQGSKTLKQRREEERKAAEAKGDTRAWNSLFMRP 450
Query: 113 SSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
+ +E +K+G S + DG + Y + + + A K + V
Sbjct: 451 DTIVENAARKHGVSKSDFLDPEADGLASRYSLAETDGIKETKNAFRKAG--------VNV 502
Query: 173 GRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG 232
+ ++ + G S L KNL TE L + F FG + + + +K
Sbjct: 503 ESLEEHAKGKVDGRKRSNHVLLAKNLPYGATENDLAKMFGKFGSLDKIILPS-----TKT 557
Query: 233 FGFVNYENPDDAKRALEAMNGSQLGSKILYVARA---------------------QKKAE 271
V + P +AK A + + LY+ A +K +
Sbjct: 558 LALVIFLEPAEAKAAFRGLAYKRYKDAPLYLEWAPSDILTPKLTSINDEVNIVIGEKDVK 617
Query: 272 R-------ERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSAC---GSIT 321
R ERI + + R E +++VKN++ +DE LR+HFS G I
Sbjct: 618 RGILEKDVERISDADIDPDRIE------ARSLFVKNLNFKTTDEVLREHFSEHMKEGRIL 671
Query: 322 SAKV---MKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKED 374
S KV +K+ K +S GFGFV F + E A N G + G L + L K D
Sbjct: 672 SVKVKKHLKNGKNVSMGFGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKND 727
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 141/323 (43%), Gaps = 58/323 (17%)
Query: 93 DVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEES 152
D RK + KNL + L ++F K+G++ K+++ +K V F
Sbjct: 514 DGRKRSNHVLLAKNLPYGATENDLAKMFGKFGSL--DKIILP---STKTLALVIFLEPAE 568
Query: 153 ANAAIEKL----------------------NGSTIND--------KQIYVGRFVKKSERI 182
A AA L ++IND K + G K ERI
Sbjct: 569 AKAAFRGLAYKRYKDAPLYLEWAPSDILTPKLTSINDEVNIVIGEKDVKRGILEKDVERI 628
Query: 183 LPG---PD-ASYTNLYMKNLDLDITEALLKEKFSSF---GKIVSLAISKD-ENG--MSKG 232
PD +L++KNL+ T+ +L+E FS G+I+S+ + K +NG +S G
Sbjct: 629 SDADIDPDRIEARSLFVKNLNFKTTDEVLREHFSEHMKEGRILSVKVKKHLKNGKNVSMG 688
Query: 233 FGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYK 292
FGFV +++ + A + G+ L L + K + +++ ++++ K K
Sbjct: 689 FGFVEFDSTETATSVCNDLQGTVLDGHALILQLCHVKNDDDKV---------QKKVEKDK 739
Query: 293 GSN-IYVKNIDDNVSDEELRDHFSACGSITSAKV-MKDEKGISKGFGFVCFSTPEEANKA 350
S + VKN+ ++++LR FS G I S ++ MK G +GF FV + T +EA A
Sbjct: 740 SSTKLLVKNVAFEATEKDLRQLFSPFGQIKSLRLPMK--FGNHRGFAFVEYVTQQEAQNA 797
Query: 351 VNTFHGFMFHGKPLYVALAQRKE 373
+ +G+ L + A+ E
Sbjct: 798 LTALSSTHLYGRHLVIERAKEGE 820
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 288 ILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEA 347
IL+ S I VKN+ V+++ L+ FS G IT K+M+ + G S+ F F+ F T +EA
Sbjct: 19 ILEGAMSRICVKNLPKYVAEDRLKQEFSRKGEITDVKLMRTKNGKSRQFAFIGFRTDQEA 78
Query: 348 NKAVNTFHGFMFHGKPLYVALAQR 371
A+ F+ + + +AQ+
Sbjct: 79 QAAIKYFNKSYLDTQAITCEVAQK 102
>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 40/275 (14%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAIEK 159
+ V + VD+ GL+E KYG L +VM + G+S+G+G+V F S + A E
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGE-LEDCIVMKERSTGRSRGFGYVTFASVDDAK---EV 61
Query: 160 LNGS-TINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
L+G + D+ + V K E + P T +++ + +TE + F +G I
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEE--MRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDIT 119
Query: 219 SLAISKDENG-MSKGFGFVNYENP---------------------------DDAKRALEA 250
L + KD+ M +G GF+ + N DD K
Sbjct: 120 DLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRM 179
Query: 251 MNGSQLGSKILYVARAQKKAE--RERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
G G+ Y++ A + A + +H + + + I+V + + E
Sbjct: 180 SQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSE 239
Query: 309 ELRDHFSACGSITSAKVMKDEKGIS-KGFGFVCFS 342
+LR +F G I + +D K +GFGFV F+
Sbjct: 240 DLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFA 274
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L + + D+ LKE S +G++ + K+ + G S+GFG+V + + DDAK E +
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---EVL 62
Query: 252 NGSQ-LGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
+G LG ++L V A K EE R K + I+V I +V++E
Sbjct: 63 SGEHVLGDRMLEVKVATPK-----------EEMRAPAK---KVTRIFVARIPPSVTEETF 108
Query: 311 RDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
R HF G IT + KD+ + +G GF+ F E ++ H G + V A
Sbjct: 109 RSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRA 166
Query: 370 QRKED 374
KED
Sbjct: 167 TPKED 171
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 106/273 (38%), Gaps = 53/273 (19%)
Query: 22 DISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAI---EVKNHSML 78
D+ L + +++ L V ++ STGRS +GYV F S DA + + V ML
Sbjct: 14 DVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRML 73
Query: 79 NGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK 138
KV R P + + +FV + SV F+KYG+I + + M D
Sbjct: 74 EVKVATPKEEMRAPAKK---VTRIFVARIPPSVTEETFRSHFEKYGDI--TDLYMPKDQG 128
Query: 139 SK---GYGFVQF---ESEESANAAIEKLNGSTI--------NDKQIYVGR---------- 174
SK G GF+ F ES E+ + +L GS + D GR
Sbjct: 129 SKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAY 188
Query: 175 --FVKKSERIL----------PGPDASY--------TNLYMKNLDLDITEALLKEKFSSF 214
++ + R PGP +++ L + L++ F F
Sbjct: 189 NAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRF 248
Query: 215 GKIVSLAISKDENGMS-KGFGFVNYENPDDAKR 246
G+I + I +D +GFGFV + + A R
Sbjct: 249 GRIEDVYIPRDPKRTGHRGFGFVTFADEGVADR 281
>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6297976 | 20130731
Length = 397
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 40/275 (14%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAIEK 159
+ V + VD+ GL+E KYG L +VM + G+S+G+G+V F S + A E
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGE-LEDCIVMKERSTGRSRGFGYVTFASVDDAK---EV 61
Query: 160 LNGS-TINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
L+G + D+ + V K E + P T +++ + +TE + F +G I
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEE--MRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDIT 119
Query: 219 SLAISKDENG-MSKGFGFVNYENP---------------------------DDAKRALEA 250
L + KD+ M +G GF+ + N DD K
Sbjct: 120 DLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRM 179
Query: 251 MNGSQLGSKILYVARAQKKAE--RERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
G G+ Y++ A + A + +H + + + I+V + + E
Sbjct: 180 SQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSE 239
Query: 309 ELRDHFSACGSITSAKVMKDEKGIS-KGFGFVCFS 342
+LR +F G I + +D K +GFGFV F+
Sbjct: 240 DLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFA 274
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L + + D+ LKE S +G++ + K+ + G S+GFG+V + + DDAK E +
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---EVL 62
Query: 252 NGSQ-LGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
+G LG ++L V A K EE R K + I+V I +V++E
Sbjct: 63 SGEHVLGDRMLEVKVATPK-----------EEMRAPAK---KVTRIFVARIPPSVTEETF 108
Query: 311 RDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
R HF G IT + KD+ + +G GF+ F E ++ H G + V A
Sbjct: 109 RSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRA 166
Query: 370 QRKED 374
KED
Sbjct: 167 TPKED 171
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 106/273 (38%), Gaps = 53/273 (19%)
Query: 22 DISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAI---EVKNHSML 78
D+ L + +++ L V ++ STGRS +GYV F S DA + + V ML
Sbjct: 14 DVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRML 73
Query: 79 NGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK 138
KV R P + + +FV + SV F+KYG+I + + M D
Sbjct: 74 EVKVATPKEEMRAPAKK---VTRIFVARIPPSVTEETFRSHFEKYGDI--TDLYMPKDQG 128
Query: 139 SK---GYGFVQF---ESEESANAAIEKLNGSTI--------NDKQIYVGR---------- 174
SK G GF+ F ES E+ + +L GS + D GR
Sbjct: 129 SKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAY 188
Query: 175 --FVKKSERIL----------PGPDASY--------TNLYMKNLDLDITEALLKEKFSSF 214
++ + R PGP +++ L + L++ F F
Sbjct: 189 NAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRF 248
Query: 215 GKIVSLAISKDENGMS-KGFGFVNYENPDDAKR 246
G+I + I +D +GFGFV + + A R
Sbjct: 249 GRIEDVYIPRDPKRTGHRGFGFVTFADEGVADR 281
>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 397
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 40/275 (14%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAIEK 159
+ V + VD+ GL+E KYG L +VM + G+S+G+G+V F S + A E
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGE-LEDCIVMKERSTGRSRGFGYVTFASVDDAK---EV 61
Query: 160 LNGS-TINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
L+G + D+ + V K E + P T +++ + +TE + F +G I
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEE--MRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDIT 119
Query: 219 SLAISKDENG-MSKGFGFVNYENP---------------------------DDAKRALEA 250
L + KD+ M +G GF+ + N DD K
Sbjct: 120 DLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRM 179
Query: 251 MNGSQLGSKILYVARAQKKAE--RERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
G G+ Y++ A + A + +H + + + I+V + + E
Sbjct: 180 SQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSE 239
Query: 309 ELRDHFSACGSITSAKVMKDEKGIS-KGFGFVCFS 342
+LR +F G I + +D K +GFGFV F+
Sbjct: 240 DLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFA 274
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L + + D+ LKE S +G++ + K+ + G S+GFG+V + + DDAK E +
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---EVL 62
Query: 252 NGSQ-LGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
+G LG ++L V A K EE R K + I+V I +V++E
Sbjct: 63 SGEHVLGDRMLEVKVATPK-----------EEMRAPAK---KVTRIFVARIPPSVTEETF 108
Query: 311 RDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
R HF G IT + KD+ + +G GF+ F E ++ H G + V A
Sbjct: 109 RSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRA 166
Query: 370 QRKED 374
KED
Sbjct: 167 TPKED 171
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 106/273 (38%), Gaps = 53/273 (19%)
Query: 22 DISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAI---EVKNHSML 78
D+ L + +++ L V ++ STGRS +GYV F S DA + + V ML
Sbjct: 14 DVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRML 73
Query: 79 NGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK 138
KV R P + + +FV + SV F+KYG+I + + M D
Sbjct: 74 EVKVATPKEEMRAPAKK---VTRIFVARIPPSVTEETFRSHFEKYGDI--TDLYMPKDQG 128
Query: 139 SK---GYGFVQF---ESEESANAAIEKLNGSTI--------NDKQIYVGR---------- 174
SK G GF+ F ES E+ + +L GS + D GR
Sbjct: 129 SKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAY 188
Query: 175 --FVKKSERIL----------PGPDASY--------TNLYMKNLDLDITEALLKEKFSSF 214
++ + R PGP +++ L + L++ F F
Sbjct: 189 NAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRF 248
Query: 215 GKIVSLAISKDENGMS-KGFGFVNYENPDDAKR 246
G+I + I +D +GFGFV + + A R
Sbjct: 249 GRIEDVYIPRDPKRTGHRGFGFVTFADEGVADR 281
>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:6293125-6298060 | 20130731
Length = 373
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 40/275 (14%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAIEK 159
+ V + VD+ GL+E KYG L +VM + G+S+G+G+V F S + A E
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGE-LEDCIVMKERSTGRSRGFGYVTFASVDDAK---EV 61
Query: 160 LNGS-TINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIV 218
L+G + D+ + V K E + P T +++ + +TE + F +G I
Sbjct: 62 LSGEHVLGDRMLEVKVATPKEE--MRAPAKKVTRIFVARIPPSVTEETFRSHFEKYGDIT 119
Query: 219 SLAISKDENG-MSKGFGFVNYENP---------------------------DDAKRALEA 250
L + KD+ M +G GF+ + N DD K
Sbjct: 120 DLYMPKDQGSKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRM 179
Query: 251 MNGSQLGSKILYVARAQKKAE--RERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
G G+ Y++ A + A + +H + + + I+V + + E
Sbjct: 180 SQGGGYGAYNAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSE 239
Query: 309 ELRDHFSACGSITSAKVMKDEKGIS-KGFGFVCFS 342
+LR +F G I + +D K +GFGFV F+
Sbjct: 240 DLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVTFA 274
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 22/185 (11%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L + + D+ LKE S +G++ + K+ + G S+GFG+V + + DDAK E +
Sbjct: 6 LVVLGIPWDVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAK---EVL 62
Query: 252 NGSQ-LGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
+G LG ++L V A K EE R K + I+V I +V++E
Sbjct: 63 SGEHVLGDRMLEVKVATPK-----------EEMRAPAK---KVTRIFVARIPPSVTEETF 108
Query: 311 RDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
R HF G IT + KD+ + +G GF+ F E ++ H G + V A
Sbjct: 109 RSHFEKYGDITDLYMPKDQGSKMHRGIGFITFGNAESVENLMSETH--ELGGSAVVVDRA 166
Query: 370 QRKED 374
KED
Sbjct: 167 TPKED 171
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/273 (24%), Positives = 106/273 (38%), Gaps = 53/273 (19%)
Query: 22 DISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAI---EVKNHSML 78
D+ L + +++ L V ++ STGRS +GYV F S DA + + V ML
Sbjct: 14 DVDTEGLKEYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKEVLSGEHVLGDRML 73
Query: 79 NGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK 138
KV R P + + +FV + SV F+KYG+I + + M D
Sbjct: 74 EVKVATPKEEMRAPAKK---VTRIFVARIPPSVTEETFRSHFEKYGDI--TDLYMPKDQG 128
Query: 139 SK---GYGFVQF---ESEESANAAIEKLNGSTI--------NDKQIYVGR---------- 174
SK G GF+ F ES E+ + +L GS + D GR
Sbjct: 129 SKMHRGIGFITFGNAESVENLMSETHELGGSAVVVDRATPKEDDVKPTGRMSQGGGYGAY 188
Query: 175 --FVKKSERIL----------PGPDASY--------TNLYMKNLDLDITEALLKEKFSSF 214
++ + R PGP +++ L + L++ F F
Sbjct: 189 NAYISTATRYAALGAPTLYDHPGPIYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRF 248
Query: 215 GKIVSLAISKDENGMS-KGFGFVNYENPDDAKR 246
G+I + I +D +GFGFV + + A R
Sbjct: 249 GRIEDVYIPRDPKRTGHRGFGFVTFADEGVADR 281
>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
chr7:38601352-38612085 | 20130731
Length = 709
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 115/237 (48%), Gaps = 28/237 (11%)
Query: 53 LCYGYVNFLSPQDAMQAIEVKNHSMLNGKVIRVLWSR-----RDPDVRKSCIG--NVFVK 105
L + + LSP+ + EV N+ + V RV+ + D D+ I ++FVK
Sbjct: 433 LEWAPSDVLSPKSQSKNDEV-NNGISEKDVKRVILEKDVEKISDVDIDPDRIEARSLFVK 491
Query: 106 NLAESVDSSGLEEIFKKY---GNILS---SKVVMADDGKSKGYGFVQFESEESANAAIEK 159
NL GL E F K+ G ILS K + S G+GFV+F+S E+A +
Sbjct: 492 NLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSAETATSVCND 551
Query: 160 LNGSTIND-KQIY-------VGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
L G+ ++ I VG+ KK E+ D S T L ++N+ + T+ L++ F
Sbjct: 552 LQGAVLDSYAHILQPCHVKNVGKVQKKVEK-----DKSSTKLLVRNVAFEATKKDLRQLF 606
Query: 212 SSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
S FG+I L + + G +GF FV Y +A+ AL A++ + L + L + RA++
Sbjct: 607 SPFGQIKKLKLPM-KFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKE 662
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 161/384 (41%), Gaps = 50/384 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+V +L ++ +L + F++F +++ V + T RS +++F P+ A +A+E
Sbjct: 180 LFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEES 239
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESV--------DSSGLEEIFKKYGN 125
N+S+ G+++RV+ ++ + + + G+ K E D+ +F +
Sbjct: 240 NNSIFQGRLLRVIPAKSNEENKDQ--GSKTHKQRREEERKAAEAKGDTRAWNSLFMRQDT 297
Query: 126 ILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN-----GSTINDKQIYVGRFVKKSE 180
I + V G SK + +AN A+ + + + + V + +E
Sbjct: 298 ITEN--VTRKHGVSKSDLLGPEADDVAANVALGETDVILETKNAFKKAGVNVESLEELAE 355
Query: 181 RILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYEN 240
+ G S L KNL TE L E F FG + + + ++ V +
Sbjct: 356 GKVYGVKRSNHVLLAKNLPYGATENELAEMFGKFGSLDKIILPS-----TRTLALVIFLE 410
Query: 241 PDDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNHQFEEKRKEQIL---- 289
P +AK A + + + LY+ A + +++ + + N E+ K IL
Sbjct: 411 PAEAKAAFGGLAYKKYRAAPLYLEWAPSDVLSPKSQSKNDEVNNGISEKDVKRVILEKDV 470
Query: 290 -----------KYKGSNIYVKNIDDNVSDEELRDHFSA------CGSITSAKVMKDEKGI 332
+ + +++VKN++ +DE LR+HFS S+ K +K K +
Sbjct: 471 EKISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNV 530
Query: 333 SKGFGFVCFSTPEEANKAVNTFHG 356
S GFGFV F + E A N G
Sbjct: 531 SMGFGFVEFDSAETATSVCNDLQG 554
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 36/230 (15%)
Query: 161 NGSTIND-KQIYVGRFVKKSERILPGPD-ASYTNLYMKNLDLDITEALLKEKFSSF---G 215
NG + D K++ + + V+K + PD +L++KNL+ T+ L+E FS G
Sbjct: 454 NGISEKDVKRVILEKDVEKISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSKHMKEG 513
Query: 216 KIVSLAISKDEN---GMSKGFGFVNYENPDDAKRALEAMNGSQLGS--------KILYVA 264
+I+S+ + K +S GFGFV +++ + A + G+ L S + V
Sbjct: 514 RILSVKVKKHLKKGKNVSMGFGFVEFDSAETATSVCNDLQGAVLDSYAHILQPCHVKNVG 573
Query: 265 RAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAK 324
+ QKK E+++ + + V+N+ + ++LR FS G I K
Sbjct: 574 KVQKKVEKDK-----------------SSTKLLVRNVAFEATKKDLRQLFSPFGQIKKLK 616
Query: 325 V-MKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
+ MK G +GF FV + T +EA A+ +G+ L + A+ E
Sbjct: 617 LPMK--FGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGE 664
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAVNTF 354
++V N+ + ++EEL +HFS GS++ ++ E SKG F+ FS PE A +A+
Sbjct: 180 LFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEES 239
Query: 355 HGFMFHGKPLYVALAQRKEDRQAQ 378
+ +F G+ L V A+ E+ + Q
Sbjct: 240 NNSIFQGRLLRVIPAKSNEENKDQ 263
>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
chr7:38600263-38612243 | 20130731
Length = 723
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 115/237 (48%), Gaps = 28/237 (11%)
Query: 53 LCYGYVNFLSPQDAMQAIEVKNHSMLNGKVIRVLWSR-----RDPDVRKSCIG--NVFVK 105
L + + LSP+ + EV N+ + V RV+ + D D+ I ++FVK
Sbjct: 447 LEWAPSDVLSPKSQSKNDEV-NNGISEKDVKRVILEKDVEKISDVDIDPDRIEARSLFVK 505
Query: 106 NLAESVDSSGLEEIFKKY---GNILS---SKVVMADDGKSKGYGFVQFESEESANAAIEK 159
NL GL E F K+ G ILS K + S G+GFV+F+S E+A +
Sbjct: 506 NLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNVSMGFGFVEFDSAETATSVCND 565
Query: 160 LNGSTIND-KQIY-------VGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
L G+ ++ I VG+ KK E+ D S T L ++N+ + T+ L++ F
Sbjct: 566 LQGAVLDSYAHILQPCHVKNVGKVQKKVEK-----DKSSTKLLVRNVAFEATKKDLRQLF 620
Query: 212 SSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
S FG+I L + + G +GF FV Y +A+ AL A++ + L + L + RA++
Sbjct: 621 SPFGQIKKLKLPM-KFGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKE 676
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/384 (22%), Positives = 161/384 (41%), Gaps = 50/384 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+V +L ++ +L + F++F +++ V + T RS +++F P+ A +A+E
Sbjct: 194 LFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEES 253
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESV--------DSSGLEEIFKKYGN 125
N+S+ G+++RV+ ++ + + + G+ K E D+ +F +
Sbjct: 254 NNSIFQGRLLRVIPAKSNEENKDQ--GSKTHKQRREEERKAAEAKGDTRAWNSLFMRQDT 311
Query: 126 ILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN-----GSTINDKQIYVGRFVKKSE 180
I + V G SK + +AN A+ + + + + V + +E
Sbjct: 312 ITEN--VTRKHGVSKSDLLGPEADDVAANVALGETDVILETKNAFKKAGVNVESLEELAE 369
Query: 181 RILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYEN 240
+ G S L KNL TE L E F FG + + + ++ V +
Sbjct: 370 GKVYGVKRSNHVLLAKNLPYGATENELAEMFGKFGSLDKIILPS-----TRTLALVIFLE 424
Query: 241 PDDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNHQFEEKRKEQIL---- 289
P +AK A + + + LY+ A + +++ + + N E+ K IL
Sbjct: 425 PAEAKAAFGGLAYKKYRAAPLYLEWAPSDVLSPKSQSKNDEVNNGISEKDVKRVILEKDV 484
Query: 290 -----------KYKGSNIYVKNIDDNVSDEELRDHFSA------CGSITSAKVMKDEKGI 332
+ + +++VKN++ +DE LR+HFS S+ K +K K +
Sbjct: 485 EKISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSKHMKEGRILSVKVKKHLKKGKNV 544
Query: 333 SKGFGFVCFSTPEEANKAVNTFHG 356
S GFGFV F + E A N G
Sbjct: 545 SMGFGFVEFDSAETATSVCNDLQG 568
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 36/230 (15%)
Query: 161 NGSTIND-KQIYVGRFVKKSERILPGPD-ASYTNLYMKNLDLDITEALLKEKFSSF---G 215
NG + D K++ + + V+K + PD +L++KNL+ T+ L+E FS G
Sbjct: 468 NGISEKDVKRVILEKDVEKISDVDIDPDRIEARSLFVKNLNFKTTDEGLREHFSKHMKEG 527
Query: 216 KIVSLAISKDEN---GMSKGFGFVNYENPDDAKRALEAMNGSQLGS--------KILYVA 264
+I+S+ + K +S GFGFV +++ + A + G+ L S + V
Sbjct: 528 RILSVKVKKHLKKGKNVSMGFGFVEFDSAETATSVCNDLQGAVLDSYAHILQPCHVKNVG 587
Query: 265 RAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAK 324
+ QKK E+++ + + V+N+ + ++LR FS G I K
Sbjct: 588 KVQKKVEKDK-----------------SSTKLLVRNVAFEATKKDLRQLFSPFGQIKKLK 630
Query: 325 V-MKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKE 373
+ MK G +GF FV + T +EA A+ +G+ L + A+ E
Sbjct: 631 LPMK--FGNHRGFAFVEYVTQQEAQNALTALSSTHLYGRHLVIERAKEGE 678
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAVNTF 354
++V N+ + ++EEL +HFS GS++ ++ E SKG F+ FS PE A +A+
Sbjct: 194 LFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEES 253
Query: 355 HGFMFHGKPLYVALAQRKEDRQAQ 378
+ +F G+ L V A+ E+ + Q
Sbjct: 254 NNSIFQGRLLRVIPAKSNEENKDQ 277
>Medtr1g045510.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:17072567-17075712 | 20130731
Length = 285
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 84/170 (49%), Gaps = 3/170 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
++ NL SVDS+ L + ++YG+ +V+ D GKS+G+ FV E NA I+ L
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
+G + + V K + P+ Y L++ NL +T L + F G +V
Sbjct: 175 DGKEFMGRTLRVNFSDKPKPKEPLYPETEY-KLFVGNLAWTVTSESLTQAFQEHGTVVGA 233
Query: 221 AISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
+ D E G S+G+GFV+Y + AL M+ +L + L V+ AQ K
Sbjct: 234 RVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGK 283
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 15/184 (8%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE 249
T LY NL + ALL +G + + D + G S+GF FV +D ++
Sbjct: 113 TKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQ 172
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEE 309
++G + + L V N + K KE + ++V N+ V+ E
Sbjct: 173 NLDGKEFMGRTLRV-------------NFSDKPKPKEPLYPETEYKLFVGNLAWTVTSES 219
Query: 310 LRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVAL 368
L F G++ A+V+ D E G S+G+GFV ++T E + A+ G+ L V+L
Sbjct: 220 LTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSL 279
Query: 369 AQRK 372
AQ K
Sbjct: 280 AQGK 283
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 81/164 (49%), Gaps = 6/164 (3%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LY G+L + A L E+ + + V D TG+S + +V +D I+
Sbjct: 115 LYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVEDCNAVIQNL 174
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGN----VFVKNLAESVDSSGLEEIFKKYGNILSS 129
+ G+ +RV +S + P ++ +FV NLA +V S L + F+++G ++ +
Sbjct: 175 DGKEFMGRTLRVNFSDK-PKPKEPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGA 233
Query: 130 KVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
+V+ + GKS+GYGFV + ++ + A+ ++ + + + V
Sbjct: 234 RVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRV 277
>Medtr1g073690.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAK 245
D+ L++ + D E LKE FS++G +++ ++ +++N G +GFGFV + +P
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN-----IYVKN 300
R LE + + + + RA + E ++I + G N I+V
Sbjct: 62 RVLEDKH--VIDGRTVDAKRAFSR-EDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGG 118
Query: 301 IDDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVN-TFH 355
+ +++E+ R +F A G +T VM D+ G +GFGF+ F T E ++ ++ TFH
Sbjct: 119 LPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFH 175
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 26/187 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L + F+ + ++ + V R+ +TG+ +G+V F P + +E K
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 74 NHSMLNGKVI--RVLWSRRDPDVRKSCI----------GN--------VFVKNLAESVDS 113
+ +++G+ + + +SR D + S GN +FV L ++
Sbjct: 68 H--VIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 114 SGLEEIFKKYGNILSSKVVMADD--GKSKGYGFVQFESEESANAAIEKLNGSTINDKQIY 171
+ F+ YG++ + VVM D G+ +G+GF+ F++EE+ + + K +N KQ+
Sbjct: 126 EKFRQYFEAYGHV-TDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTF-HDLNGKQVE 183
Query: 172 VGRFVKK 178
V R + K
Sbjct: 184 VKRALPK 190
>Medtr1g073690.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:32695268-32699181 | 20130731
Length = 469
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAK 245
D+ L++ + D E LKE FS++G +++ ++ +++N G +GFGFV + +P
Sbjct: 2 DSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLD 61
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN-----IYVKN 300
R LE + + + + RA + E ++I + G N I+V
Sbjct: 62 RVLEDKH--VIDGRTVDAKRAFSR-EDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGG 118
Query: 301 IDDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVN-TFH 355
+ +++E+ R +F A G +T VM D+ G +GFGF+ F T E ++ ++ TFH
Sbjct: 119 LPPTLAEEKFRQYFEAYGHVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFH 175
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 26/187 (13%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L + F+ + ++ + V R+ +TG+ +G+V F P + +E K
Sbjct: 8 LFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDK 67
Query: 74 NHSMLNGKVI--RVLWSRRDPDVRKSCI----------GN--------VFVKNLAESVDS 113
+ +++G+ + + +SR D + S GN +FV L ++
Sbjct: 68 H--VIDGRTVDAKRAFSREDQQISVSSRSGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAE 125
Query: 114 SGLEEIFKKYGNILSSKVVMADD--GKSKGYGFVQFESEESANAAIEKLNGSTINDKQIY 171
+ F+ YG++ + VVM D G+ +G+GF+ F++EE+ + + K +N KQ+
Sbjct: 126 EKFRQYFEAYGHV-TDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTF-HDLNGKQVE 183
Query: 172 VGRFVKK 178
V R + K
Sbjct: 184 VKRALPK 190
>Medtr3g075500.2 | 31 kDa ribonucleoprotein | HC |
chr3:34381440-34379306 | 20130731
Length = 271
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 80/159 (50%), Gaps = 7/159 (4%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEKL 160
+FV N VDS L +F + G + ++V+ S+G+GFV + E A +A+EK
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYT-----NLYMKNLDLDITEALLKEKFSSFG 215
NG N + + V + K R A T +Y+ NL ++ + L++ FS G
Sbjct: 171 NGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSEHG 230
Query: 216 KIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNG 253
KIVS + D E G S+GFGFV + + A+ A++G
Sbjct: 231 KIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKI-VSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L++ N D+ L F G + ++ I + +S+GFGFV ++A+ A+E
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 252 NGSQLGSKILYVARAQKKAER-ERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEEL 310
NG + L V +A K R ER + + E +L+ IYV N+ V + L
Sbjct: 171 NGYDYNGRSLVVNKASPKGSRPERT---ERAPRTFEPVLR-----IYVANLAWEVDNSRL 222
Query: 311 RDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHG 356
FS G I SA+V+ D E G S+GFGFV S E N A+ G
Sbjct: 223 EQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 12/160 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG+ D+ +L F + + V + T S +G+V + ++A A+E
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 74 NHSMLNGKVI----------RVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKY 123
N NG+ + R + R P + + ++V NLA VD+S LE++F ++
Sbjct: 171 NGYDYNGRSLVVNKASPKGSRPERTERAPRTFEPVL-RIYVANLAWEVDNSRLEQVFSEH 229
Query: 124 GNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNG 162
G I+S++VV + G+S+G+GFV E N AI L+G
Sbjct: 230 GKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDG 269
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTF 354
++V N +V E+L F G++ A+V+ + + +S+GFGFV ST EEA AV F
Sbjct: 111 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 170
Query: 355 HGFMFHGKPLYVALAQRKEDR 375
+G+ ++G+ L V A K R
Sbjct: 171 NGYDYNGRSLVVNKASPKGSR 191
>Medtr2g022950.2 | polyadenylate-binding protein RBP47B | HC |
chr2:7987476-7990818 | 20130731
Length = 284
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++GDL + + L+ F L SV+V R+ T +S YG++ F + A + ++
Sbjct: 62 LWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVLQTY 121
Query: 74 NHSML--NGKVIRVLW---------SRRD--PDVRKSCIGNVFVKNLAESVDSSGLEEIF 120
N +++ G+ R+ W SR+D PD +FV +LA V L+E F
Sbjct: 122 NGTIMPNGGQNYRLNWATFSAGERSSRQDDGPD------HTIFVGDLAADVTDYLLQETF 175
Query: 121 K-KYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKK 178
+ +Y ++ +KVV+ G+SKGYGFV+F E A+ ++ G + + + +G K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
Query: 179 S 179
+
Sbjct: 236 N 236
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 89/180 (49%), Gaps = 12/180 (6%)
Query: 99 IGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
+ +++ +L +D + L F G + S KV+ +S+GYGF++F + +A +
Sbjct: 59 VRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTRATAERVL 118
Query: 158 EKLNGSTI-NDKQIYVGRFV-----KKSERILPGPDASYTNLYMKNLDLDITEALLKEKF 211
+ NG+ + N Q Y + ++S R GPD + +++ +L D+T+ LL+E F
Sbjct: 119 QTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHT---IFVGDLAADVTDYLLQETF 175
Query: 212 SS-FGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
+ + + + D G SKG+GFV + + + RA+ M G ++ + + A K
Sbjct: 176 RARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGPATNK 235
>Medtr7g010360.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
LC | chr7:2533493-2542856 | 20130731
Length = 752
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 139/328 (42%), Gaps = 48/328 (14%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDG-KSKGYGFVQFESEESANAAIEKL 160
V+V + + L+E + G ++ ++ D +++G+ FV + S E A+ AI++L
Sbjct: 352 VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKEL 411
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVS 219
N + +I + KS L++ N+ E LK+ S G + +
Sbjct: 412 NNTEFKAGKIKCSKSQAKSR------------LFIGNIPRSWGEKDLKKVVSDIGPGVTA 459
Query: 220 LAISKDENGMS--KGFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERERI 275
+ + KD +S +G+ F++Y N A+ + + M +LG V A
Sbjct: 460 VELIKDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWA--------- 510
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
E K + + +YVKN+ NV+ E+L+ F G IT + + G K
Sbjct: 511 -----EPKNADSSASSQVKEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKN 565
Query: 336 -FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQA---QLQLQ-----YAQK 386
GFV F+ A KA+ ++ G+ L +LA+++ D +A +Q Q Y
Sbjct: 566 RIGFVHFAERSNAMKALKNTEKYVLDGQILECSLAKQQADPKAVVSNIQTQGSLPRYPPH 625
Query: 387 IA-GLAGPSTAIIPGGY------PPFYY 407
+ GL G ++ GY PF Y
Sbjct: 626 VGYGLDGNPYGVLGAGYGAPGLAQPFTY 653
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/269 (18%), Positives = 116/269 (43%), Gaps = 12/269 (4%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG + D L + + VR+ + + + +V + S + A +AI+
Sbjct: 352 VYVGGIPLDAKTEDLKEFCECIGEVVQVRIFKGKDASENRGFAFVTYRSIELASKAIKEL 411
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
N++ I+ + +F+ N+ S L+++ G +++ ++
Sbjct: 412 NNTEFKAGKIKC--------SKSQAKSRLFIGNIPRSWGEKDLKKVVSDIGPGVTAVELI 463
Query: 134 AD---DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERILPGPDASY 190
D ++GY F+ + + + A + +K+ + + + + +
Sbjct: 464 KDMKNISNNRGYAFIDYHNNQCAEYSRQKMTSPSFKLGDNFPTVNWAEPKNADSSASSQV 523
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG-FGFVNYENPDDAKRALE 249
+Y+KNL ++T+ LK+ F GKI + + + G K GFV++ +A +AL+
Sbjct: 524 KEVYVKNLPKNVTKEQLKKLFEHHGKITKVVLPPPKPGQEKNRIGFVHFAERSNAMKALK 583
Query: 250 AMNGSQLGSKILYVARAQKKAERERILNH 278
L +IL + A+++A+ + ++++
Sbjct: 584 NTEKYVLDGQILECSLAKQQADPKAVVSN 612
>Medtr1g064230.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NL SVDS+ L EIF+ G++ +V+ G+S+G+GFV S AA ++L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 161 NGSTINDKQIYVG------------------RFVKKSERILP--GPDASYTNLYMKNLDL 200
NG ++ +++ V RF R P G +++ NL
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 201 DITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSK 259
+ L+ F G+++ + D E+G S+GFGFV + + D+ A+ ++G+ L +
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGR 265
Query: 260 ILYVARAQKKAERE 273
+ V+ A + +R+
Sbjct: 266 AIRVSPADSRPKRQ 279
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L++ NL + A L E F + G + + + D++ G S+GFGFV + + + A + +
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKG----------SNIYVKNI 301
NG + + L V R N +F E + + +G + ++V N+
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSE--NSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNL 203
Query: 302 DDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
V + L F G + AKV+ D E G S+GFGFV FS+ +E + A+ T G +
Sbjct: 204 AWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLN 263
Query: 361 GKPLYVALAQRKEDRQ 376
G+ + V+ A + RQ
Sbjct: 264 GRAIRVSPADSRPKRQ 279
>Medtr1g064230.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:28254735-28256581 | 20130731
Length = 280
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 22/194 (11%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NL SVDS+ L EIF+ G++ +V+ G+S+G+GFV S AA ++L
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 161 NGSTINDKQIYVG------------------RFVKKSERILP--GPDASYTNLYMKNLDL 200
NG ++ +++ V RF R P G +++ NL
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 205
Query: 201 DITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSK 259
+ L+ F G+++ + D E+G S+GFGFV + + D+ A+ ++G+ L +
Sbjct: 206 GVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNGR 265
Query: 260 ILYVARAQKKAERE 273
+ V+ A + +R+
Sbjct: 266 AIRVSPADSRPKRQ 279
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 14/196 (7%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L++ NL + A L E F + G + + + D++ G S+GFGFV + + + A + +
Sbjct: 86 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 145
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKG----------SNIYVKNI 301
NG + + L V R N +F E + + +G + ++V N+
Sbjct: 146 NGYVVDGRELRVNAGPPPPPRSE--NSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNL 203
Query: 302 DDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
V + L F G + AKV+ D E G S+GFGFV FS+ +E + A+ T G +
Sbjct: 204 AWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLN 263
Query: 361 GKPLYVALAQRKEDRQ 376
G+ + V+ A + RQ
Sbjct: 264 GRAIRVSPADSRPKRQ 279
>Medtr6g004810.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr6:438661-434987 | 20130731
Length = 383
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 90/193 (46%), Gaps = 18/193 (9%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L G AS +++ L + T A + F +G+I I KD + G +GFGF+ Y +P
Sbjct: 37 LTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADP 96
Query: 242 DDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNI 301
+ +E + + SK + + R R + + F K+ I+V I
Sbjct: 97 SVVDKVIE--DSHIINSKQVEIKRT---IPRGAVGSKDFRTKK-----------IFVGGI 140
Query: 302 DDNVSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
NV+++E RD F+ G + ++M+D S+GFGFV F T E + ++ + F
Sbjct: 141 PSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFA 200
Query: 361 GKPLYVALAQRKE 373
G + + A+ K+
Sbjct: 201 GTQVEIKKAEPKK 213
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 8/173 (4%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI 157
G +F+ LA + + F KYG I S V+M D G+ +G+GF+ + + I
Sbjct: 45 GKIFIGGLARETTIAQFIKHFGKYGEITDS-VIMKDRKTGQPRGFGFITYADPSVVDKVI 103
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKI 217
E + IN KQ+ + R + + + D +++ + ++TE ++ F+ +G++
Sbjct: 104 E--DSHIINSKQVEIKRTIPRG--AVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
Query: 218 VSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK 269
I +D + S+GFGFV ++ + L N + + + +A+ K
Sbjct: 160 KDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPK 212
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 74/157 (47%), Gaps = 17/157 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G L + + AQ F ++ + + +D TG+ +G++ + P + IE
Sbjct: 47 IFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE-- 104
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGN-------VFVKNLAESVDSSGLEEIFKKYGNI 126
+ ++N K + + + + + +G+ +FV + +V + F +YG +
Sbjct: 105 DSHIINSKQVEIKRT-----IPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEV 159
Query: 127 LSSKVVMAD--DGKSKGYGFVQFESEESANAAIEKLN 161
+ +M D +S+G+GFV F++EE+ + + N
Sbjct: 160 KDHQ-IMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGN 195
>Medtr1g101520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:45856698-45851996 | 20130731
Length = 388
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 83/182 (45%), Gaps = 25/182 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+F N S LE +F++YG + +V M G+ F+ E E A AAI L+
Sbjct: 4 IFCGNFEYDCRESELERLFRRYGKV--DRVDMK-----AGFAFIYMEDERDAEAAIRALD 56
Query: 162 GSTINDKQIYVGRFVKKSERIL--PG--PDASYTN------LYMKNLDLDITEAL-LKEK 210
K + K ER + P P S N L++ N D T L+
Sbjct: 57 RIEFGRKGRRLRVEWTKQERGVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLERH 116
Query: 211 FSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
F +GKIVS+ I K+ F FV YE+ DDA +ALEA N S+L +++ V A +
Sbjct: 117 FEPYGKIVSVRIRKN-------FAFVQYESEDDACKALEATNNSKLMDRVISVEFAARDD 169
Query: 271 ER 272
+R
Sbjct: 170 DR 171
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 78/185 (42%), Gaps = 17/185 (9%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
++ N + D E+ L+ F +GK+ D M GF F+ E+ DA+ A+ A++
Sbjct: 4 IFCGNFEYDCRESELERLFRRYGKV-------DRVDMKAGFAFIYMEDERDAEAAIRALD 56
Query: 253 GSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDD-NVSDEELR 311
+ G K + K ER + E ++ ++V N D +L
Sbjct: 57 RIEFGRKGRRLRVEWTKQER--GVRRPAERPKRSSANARPSKTLFVINFDTYQTRTRDLE 114
Query: 312 DHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQR 371
HF G I S ++ K+ F FV + + ++A KA+ + + + V A R
Sbjct: 115 RHFEPYGKIVSVRIRKN-------FAFVQYESEDDACKALEATNNSKLMDRVISVEFAAR 167
Query: 372 KEDRQ 376
+DR+
Sbjct: 168 DDDRR 172
>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
chr4:50587410-50576809 | 20130731
Length = 737
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 94/195 (48%), Gaps = 19/195 (9%)
Query: 188 ASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKR 246
++ L++ ++ TE ++ F G +V +A+ KD + G +G F+ Y ++A +
Sbjct: 85 GNFAKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQ 144
Query: 247 ALEAM-NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
A+ A+ N L + + ERER+ ++YK ++V +++
Sbjct: 145 AIRALHNRHTLPGGVGPIQVRYADGERERL-----------GAVEYK---LFVGSLNKQA 190
Query: 306 SDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHG-FMFHG--K 362
S +E+ + FS G I +M+D++ S+G GFV +S + A A+N +G + G +
Sbjct: 191 SVKEVEEVFSKYGRIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCEQ 250
Query: 363 PLYVALAQRKEDRQA 377
PL V A K RQ
Sbjct: 251 PLIVRFADPKRPRQG 265
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIE-V 72
L+VG + ++ + F E N+ V + +D TG+ ++ + + ++A QAI +
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEADQAIRAL 149
Query: 73 KNHSMLNGKV--IRVLWSRRDPDVRKSCIGNV----FVKNLAESVDSSGLEEIFKKYGNI 126
N L G V I+V ++ D + +G V FV +L + +EE+F KYG I
Sbjct: 150 HNRHTLPGGVGPIQVRYA----DGERERLGAVEYKLFVGSLNKQASVKEVEEVFSKYGRI 205
Query: 127 LSSKVVMADDGKSKGYGFVQFESEESANAAIEKLNG 162
++ D +S+G GFV++ + A AAI LNG
Sbjct: 206 EDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNG 241
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADD---GKSKGYGFVQFESEESANAAIE 158
+FV ++ + + +F+++GN++ +V + D G+ +G F+++ + E A+ AI
Sbjct: 90 LFVGSVPRTATEEDIRPLFEEHGNVV--EVALIKDRKTGQHQGCCFIKYATSEEADQAIR 147
Query: 159 KL-NGSTINDK--QIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFG 215
L N T+ I V + ER+ A L++ +L+ + ++E FS +G
Sbjct: 148 ALHNRHTLPGGVGPIQVRYADGERERL----GAVEYKLFVGSLNKQASVKEVEEVFSKYG 203
Query: 216 KIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNG 253
+I + + +D+ S+G GFV Y + D A A+ A+NG
Sbjct: 204 RIEDVYLMRDDQKQSRGCGFVKYSHRDMALAAINALNG 241
>Medtr7g104800.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 135/309 (43%), Gaps = 41/309 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
V++ + L + G + +V+ + +KGY FV F+++E A+ A+++LN
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE--AKGYAFVTFKTKELASKALKELN 160
Query: 162 GSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVSL 220
S + GR +K S P L++ ++ + T +K+ + G ++S+
Sbjct: 161 NSE------FKGRKIKCS------PSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISV 208
Query: 221 AISKDENGMS--KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
+ KD S +GF F+ Y N A+ + + M+ S K + +
Sbjct: 209 ELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNF------------KLDNNDAIVS 256
Query: 279 QFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG-FG 337
+ + E + +YVKN+ +N++ L++ F G IT + + G K +G
Sbjct: 257 WADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYG 316
Query: 338 FVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGP-STA 396
FV F+ A KA+ + +G+ L +LA+ + D QK +G + ++A
Sbjct: 317 FVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQAD----------QKSSGASNSFNSA 366
Query: 397 IIPGGYPPF 405
++P PP
Sbjct: 367 VLPAYPPPL 375
>Medtr7g104800.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 135/309 (43%), Gaps = 41/309 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
V++ + L + G + +V+ + +KGY FV F+++E A+ A+++LN
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE--AKGYAFVTFKTKELASKALKELN 160
Query: 162 GSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVSL 220
S + GR +K S P L++ ++ + T +K+ + G ++S+
Sbjct: 161 NSE------FKGRKIKCS------PSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISV 208
Query: 221 AISKDENGMS--KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
+ KD S +GF F+ Y N A+ + + M+ S K + +
Sbjct: 209 ELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNF------------KLDNNDAIVS 256
Query: 279 QFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG-FG 337
+ + E + +YVKN+ +N++ L++ F G IT + + G K +G
Sbjct: 257 WADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYG 316
Query: 338 FVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGP-STA 396
FV F+ A KA+ + +G+ L +LA+ + D QK +G + ++A
Sbjct: 317 FVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQAD----------QKSSGASNSFNSA 366
Query: 397 IIPGGYPPF 405
++P PP
Sbjct: 367 VLPAYPPPL 375
>Medtr7g104800.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42488464-42483010 | 20130731
Length = 477
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 135/309 (43%), Gaps = 41/309 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
V++ + L + G + +V+ + +KGY FV F+++E A+ A+++LN
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE--AKGYAFVTFKTKELASKALKELN 160
Query: 162 GSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVSL 220
S + GR +K S P L++ ++ + T +K+ + G ++S+
Sbjct: 161 NSE------FKGRKIKCS------PSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISV 208
Query: 221 AISKDENGMS--KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
+ KD S +GF F+ Y N A+ + + M+ S K + +
Sbjct: 209 ELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNF------------KLDNNDAIVS 256
Query: 279 QFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG-FG 337
+ + E + +YVKN+ +N++ L++ F G IT + + G K +G
Sbjct: 257 WADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYG 316
Query: 338 FVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGP-STA 396
FV F+ A KA+ + +G+ L +LA+ + D QK +G + ++A
Sbjct: 317 FVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQAD----------QKSSGASNSFNSA 366
Query: 397 IIPGGYPPF 405
++P PP
Sbjct: 367 VLPAYPPPL 375
>Medtr7g104800.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:42489150-42483010 | 20130731
Length = 477
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/309 (22%), Positives = 135/309 (43%), Gaps = 41/309 (13%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
V++ + L + G + +V+ + +KGY FV F+++E A+ A+++LN
Sbjct: 103 VYIGGIPHETSEKDLRVFCQSVGEVAEVRVMKGKE--AKGYAFVTFKTKELASKALKELN 160
Query: 162 GSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVSL 220
S + GR +K S P L++ ++ + T +K+ + G ++S+
Sbjct: 161 NSE------FKGRKIKCS------PSQVKHRLFIGSVPKEWTVEDMKKVVAKVGPGVISV 208
Query: 221 AISKDENGMS--KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNH 278
+ KD S +GF F+ Y N A+ + + M+ S K + +
Sbjct: 209 ELLKDPQSSSRNRGFAFIEYHNHACAEYSRQKMSNSNF------------KLDNNDAIVS 256
Query: 279 QFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG-FG 337
+ + E + +YVKN+ +N++ L++ F G IT + + G K +G
Sbjct: 257 WADPRNSESSSSSQVKAVYVKNLPENITQNRLKELFEHHGKITKVALPPAKAGQEKSRYG 316
Query: 338 FVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGP-STA 396
FV F+ A KA+ + +G+ L +LA+ + D QK +G + ++A
Sbjct: 317 FVHFADRSSAMKALKNTEKYEINGQTLECSLAKPQAD----------QKSSGASNSFNSA 366
Query: 397 IIPGGYPPF 405
++P PP
Sbjct: 367 VLPAYPPPL 375
>Medtr7g118120.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031900 | 20130731
Length = 479
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 124/266 (46%), Gaps = 17/266 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G L D SD + + ++ +++ +D TG S Y +V + + + A +AI+
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
++ GK +R L S +F+ N+ ++ + + G + S ++
Sbjct: 166 HNKEFKGKTLRCLLS--------ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLI 217
Query: 134 AD---DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSE-RILPGPDAS 189
D +++G+ FV + + A+ + +K+ S++ K + V ++ + P A+
Sbjct: 218 KDPQNQSRNRGFAFVLYYNNACADFSRQKM--SSVGFKLDGITPTVTWADPKTSPDQSAA 275
Query: 190 YTN---LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
+ LY+KN+ ++T LKE F G++ + + + + FGF++Y A +
Sbjct: 276 ASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALK 335
Query: 247 ALEAMNGSQLGSKILYVARAQKKAER 272
A++ ++ + L V A+ +AE+
Sbjct: 336 AVKETEKYEIDGQALEVVIAKPQAEK 361
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 30/281 (10%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
VF+ L + E+ + G+I+ K++ + G+SKGY FV ++++E A AI+
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID-- 163
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVS 219
I+ F K+ R L + L++ N+ TE ++ G + S
Sbjct: 164 --------DIHNKEFKGKTLRCLLS--ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVES 213
Query: 220 LAISKDENGMSK--GFGFVNYENPDDAKRALEAMN--GSQLGSKILYVARAQKKAERERI 275
+ + KD S+ GF FV Y N A + + M+ G +L V A K +
Sbjct: 214 IDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD-- 271
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ + +YVKNI +NV+ E+L++ F G +T + + +
Sbjct: 272 ----------QSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRD 321
Query: 336 FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQ 376
FGF+ ++ A KAV + G+ L V +A+ + +++
Sbjct: 322 FGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 275 ILNHQFEEKRKEQILKYK-GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGI 332
+++ + EK E + + GS +++ + + SD+++R+ G I K++KD E G
Sbjct: 84 LIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGE 143
Query: 333 SKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
SKG+ FV + T E A KA++ H F GK L L++ K
Sbjct: 144 SKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETK 183
>Medtr7g118120.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025533-49031887 | 20130731
Length = 479
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 124/266 (46%), Gaps = 17/266 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G L D SD + + ++ +++ +D TG S Y +V + + + A +AI+
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
++ GK +R L S +F+ N+ ++ + + G + S ++
Sbjct: 166 HNKEFKGKTLRCLLS--------ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLI 217
Query: 134 AD---DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSE-RILPGPDAS 189
D +++G+ FV + + A+ + +K+ S++ K + V ++ + P A+
Sbjct: 218 KDPQNQSRNRGFAFVLYYNNACADFSRQKM--SSVGFKLDGITPTVTWADPKTSPDQSAA 275
Query: 190 YTN---LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
+ LY+KN+ ++T LKE F G++ + + + + FGF++Y A +
Sbjct: 276 ASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALK 335
Query: 247 ALEAMNGSQLGSKILYVARAQKKAER 272
A++ ++ + L V A+ +AE+
Sbjct: 336 AVKETEKYEIDGQALEVVIAKPQAEK 361
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 30/281 (10%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
VF+ L + E+ + G+I+ K++ + G+SKGY FV ++++E A AI+
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID-- 163
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVS 219
I+ F K+ R L + L++ N+ TE ++ G + S
Sbjct: 164 --------DIHNKEFKGKTLRCLLS--ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVES 213
Query: 220 LAISKDENGMSK--GFGFVNYENPDDAKRALEAMN--GSQLGSKILYVARAQKKAERERI 275
+ + KD S+ GF FV Y N A + + M+ G +L V A K +
Sbjct: 214 IDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD-- 271
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ + +YVKNI +NV+ E+L++ F G +T + + +
Sbjct: 272 ----------QSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRD 321
Query: 336 FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQ 376
FGF+ ++ A KAV + G+ L V +A+ + +++
Sbjct: 322 FGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 275 ILNHQFEEKRKEQILKYK-GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGI 332
+++ + EK E + + GS +++ + + SD+++R+ G I K++KD E G
Sbjct: 84 LIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGE 143
Query: 333 SKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
SKG+ FV + T E A KA++ H F GK L L++ K
Sbjct: 144 SKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETK 183
>Medtr7g118120.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:49025861-49031887 | 20130731
Length = 479
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 124/266 (46%), Gaps = 17/266 (6%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G L D SD + + ++ +++ +D TG S Y +V + + + A +AI+
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAIDDI 165
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
++ GK +R L S +F+ N+ ++ + + G + S ++
Sbjct: 166 HNKEFKGKTLRCLLS--------ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVESIDLI 217
Query: 134 AD---DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSE-RILPGPDAS 189
D +++G+ FV + + A+ + +K+ S++ K + V ++ + P A+
Sbjct: 218 KDPQNQSRNRGFAFVLYYNNACADFSRQKM--SSVGFKLDGITPTVTWADPKTSPDQSAA 275
Query: 190 YTN---LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
+ LY+KN+ ++T LKE F G++ + + + + FGF++Y A +
Sbjct: 276 ASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRDFGFIHYAERSSALK 335
Query: 247 ALEAMNGSQLGSKILYVARAQKKAER 272
A++ ++ + L V A+ +AE+
Sbjct: 336 AVKETEKYEIDGQALEVVIAKPQAEK 361
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 123/281 (43%), Gaps = 30/281 (10%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
VF+ L + E+ + G+I+ K++ + G+SKGY FV ++++E A AI+
Sbjct: 106 VFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGESKGYAFVGYKTKEVAQKAID-- 163
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVS 219
I+ F K+ R L + L++ N+ TE ++ G + S
Sbjct: 164 --------DIHNKEFKGKTLRCLLS--ETKHRLFIGNIPKTWTEDEFRKAVEGVGPGVES 213
Query: 220 LAISKDENGMSK--GFGFVNYENPDDAKRALEAMN--GSQLGSKILYVARAQKKAERERI 275
+ + KD S+ GF FV Y N A + + M+ G +L V A K +
Sbjct: 214 IDLIKDPQNQSRNRGFAFVLYYNNACADFSRQKMSSVGFKLDGITPTVTWADPKTSPD-- 271
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ + +YVKNI +NV+ E+L++ F G +T + + +
Sbjct: 272 ----------QSAAASQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKASGKRD 321
Query: 336 FGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRQ 376
FGF+ ++ A KAV + G+ L V +A+ + +++
Sbjct: 322 FGFIHYAERSSALKAVKETEKYEIDGQALEVVIAKPQAEKK 362
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 275 ILNHQFEEKRKEQILKYK-GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGI 332
+++ + EK E + + GS +++ + + SD+++R+ G I K++KD E G
Sbjct: 84 LIDEEEREKHDELLSRPPHGSEVFIGGLPRDTSDDDVRELCEPMGDIVEIKLIKDRETGE 143
Query: 333 SKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRK 372
SKG+ FV + T E A KA++ H F GK L L++ K
Sbjct: 144 SKGYAFVGYKTKEVAQKAIDDIHNKEFKGKTLRCLLSETK 183
>Medtr3g027140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:8413608-8404220 | 20130731
Length = 235
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 24/189 (12%)
Query: 92 PDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFES 149
P +RK +GN+ +V + LE+I +++G + ++V M D +S+ + FV ++
Sbjct: 57 PALRKLYVGNI-----PRTVSNDELEKIVQEHGAVEKAEV-MYDKYSKRSRRFAFVTMKT 110
Query: 150 EESANAAIEKLNGSTINDKQIYV----------GRFVKKSERILPGPDASYTNLYMKNLD 199
E ANAA EKLNG+ I ++I V G V+ E D+ Y +Y+ NL
Sbjct: 111 VEDANAAAEKLNGTEIGGREIKVNITEKPLTTEGLPVQAGESTF--VDSPY-KVYVGNLA 167
Query: 200 LDITEALLKEKFSSFGKIVSLAISKDENGMSK--GFGFVNYENPDDAKRALEAMNGSQLG 257
++T LK+ FS G +S +S+ G SK GFGFV + + +D + A+ + N + L
Sbjct: 168 KNVTSDSLKKFFSEKGNALSAKVSRAP-GTSKSSGFGFVTFSSDEDVEAAISSFNNALLE 226
Query: 258 SKILYVARA 266
+ + V +A
Sbjct: 227 GQKIRVNKA 235
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 88/177 (49%), Gaps = 9/177 (5%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
LY+ N+ ++ L++ G + + D+ + S+ F FV + +DA A E +
Sbjct: 62 LYVGNIPRTVSNDELEKIVQEHGAVEKAEVMYDKYSKRSRRFAFVTMKTVEDANAAAEKL 121
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG+++G + + V +K E + E + K +YV N+ NV+ + L+
Sbjct: 122 NGTEIGGREIKVNITEKPLTTEGLPVQAGESTFVDSPYK-----VYVGNLAKNVTSDSLK 176
Query: 312 DHFSACGSITSAKVMKDEKGISK--GFGFVCFSTPEEANKAVNTFHGFMFHGKPLYV 366
FS G+ SAKV + G SK GFGFV FS+ E+ A+++F+ + G+ + V
Sbjct: 177 KFFSEKGNALSAKVSR-APGTSKSSGFGFVTFSSDEDVEAAISSFNNALLEGQKIRV 232
>Medtr8g007390.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L D ++ L F+E + VR+ + T ++ + ++ F + + A +A+
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ ++NGK V S +D D +++ N+ ++ L+E K YG + +
Sbjct: 276 KNPVINGKQCGVTPS-QDSDT-------LYLGNICKTWTKEALKEKLKHYGVTNVEDITL 327
Query: 134 ADD----GKSKGYGFVQFESEESANAAIEKLNGSTIN---DKQI---YVGRFVKKSERIL 183
+D G ++G+ F++F S A A ++L + DK + F+ + I+
Sbjct: 328 VEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIM 387
Query: 184 PGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPD 242
+ + + D D LLK+ +G++ + ++++ K +GFV + + D
Sbjct: 388 SQVKTVFIDALPPSWDEDYVRNLLKK----YGEVEKIELARNMPAARRKDYGFVTFGSHD 443
Query: 243 DAKRALEAMNGSQLG 257
A R +++ G++LG
Sbjct: 444 AAIRCADSITGTELG 458
>Medtr8g007390.4 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 799
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L D ++ L F+E + VR+ + T ++ + ++ F + + A +A+
Sbjct: 216 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 275
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ ++NGK V S +D D +++ N+ ++ L+E K YG + +
Sbjct: 276 KNPVINGKQCGVTPS-QDSDT-------LYLGNICKTWTKEALKEKLKHYGVTNVEDITL 327
Query: 134 ADD----GKSKGYGFVQFESEESANAAIEKLNGSTIN---DKQI---YVGRFVKKSERIL 183
+D G ++G+ F++F S A A ++L + DK + F+ + I+
Sbjct: 328 VEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIM 387
Query: 184 PGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPD 242
+ + + D D LLK+ +G++ + ++++ K +GFV + + D
Sbjct: 388 SQVKTVFIDALPPSWDEDYVRNLLKK----YGEVEKIELARNMPAARRKDYGFVTFGSHD 443
Query: 243 DAKRALEAMNGSQLG 257
A R +++ G++LG
Sbjct: 444 AAIRCADSITGTELG 458
>Medtr8g007390.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L D ++ L F+E + VR+ + T ++ + ++ F + + A +A+
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ ++NGK V S +D D +++ N+ ++ L+E K YG + +
Sbjct: 277 KNPVINGKQCGVTPS-QDSDT-------LYLGNICKTWTKEALKEKLKHYGVTNVEDITL 328
Query: 134 ADD----GKSKGYGFVQFESEESANAAIEKLNGSTIN---DKQI---YVGRFVKKSERIL 183
+D G ++G+ F++F S A A ++L + DK + F+ + I+
Sbjct: 329 VEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIM 388
Query: 184 PGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPD 242
+ + + D D LLK+ +G++ + ++++ K +GFV + + D
Sbjct: 389 SQVKTVFIDALPPSWDEDYVRNLLKK----YGEVEKIELARNMPAARRKDYGFVTFGSHD 444
Query: 243 DAKRALEAMNGSQLG 257
A R +++ G++LG
Sbjct: 445 AAIRCADSITGTELG 459
>Medtr8g007390.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:1510737-1506382 | 20130731
Length = 800
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 118/255 (46%), Gaps = 23/255 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L D ++ L F+E + VR+ + T ++ + ++ F + + A +A+
Sbjct: 217 VFVGGLDKDATEDDLRKVFSEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAEL 276
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ ++NGK V S +D D +++ N+ ++ L+E K YG + +
Sbjct: 277 KNPVINGKQCGVTPS-QDSDT-------LYLGNICKTWTKEALKEKLKHYGVTNVEDITL 328
Query: 134 ADD----GKSKGYGFVQFESEESANAAIEKLNGSTIN---DKQI---YVGRFVKKSERIL 183
+D G ++G+ F++F S A A ++L + DK + F+ + I+
Sbjct: 329 VEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVTFGVDKPAKVSFADSFIDPGDEIM 388
Query: 184 PGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPD 242
+ + + D D LLK+ +G++ + ++++ K +GFV + + D
Sbjct: 389 SQVKTVFIDALPPSWDEDYVRNLLKK----YGEVEKIELARNMPAARRKDYGFVTFGSHD 444
Query: 243 DAKRALEAMNGSQLG 257
A R +++ G++LG
Sbjct: 445 AAIRCADSITGTELG 459
>Medtr8g076100.2 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 19/263 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L D ++ L F + VR+ ++SST ++ Y V F + + A +A+
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ ++ GK S D D +F+ N+ + +++ K YG + +
Sbjct: 480 KNPVIRGKRCGTSPS-EDNDT-------LFLGNICNTWTKEAVKQKLKDYGVEGVENITL 531
Query: 134 ADD----GKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERIL-PGPD- 187
D G S+G+ F++F A A ++L + V +E I P P+
Sbjct: 532 VPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEI 591
Query: 188 -ASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAK 245
A ++++ L L E ++E S+G+IV + +++ K GFV++ + A
Sbjct: 592 MAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAAL 651
Query: 246 RALEAMNGSQLG---SKILYVAR 265
++ +N S+LG SKI AR
Sbjct: 652 ACVDGVNKSELGDGTSKIKLRAR 674
>Medtr8g076100.3 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 941
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 19/263 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L D ++ L F + VR+ ++SST ++ Y V F + + A +A+
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ ++ GK S D D +F+ N+ + +++ K YG + +
Sbjct: 480 KNPVIRGKRCGTSPS-EDNDT-------LFLGNICNTWTKEAVKQKLKDYGVEGVENITL 531
Query: 134 ADD----GKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERIL-PGPD- 187
D G S+G+ F++F A A ++L + V +E I P P+
Sbjct: 532 VPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEI 591
Query: 188 -ASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAK 245
A ++++ L L E ++E S+G+IV + +++ K GFV++ + A
Sbjct: 592 MAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAAL 651
Query: 246 RALEAMNGSQLG---SKILYVAR 265
++ +N S+LG SKI AR
Sbjct: 652 ACVDGVNKSELGDGTSKIKLRAR 674
>Medtr5g097580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42753184 | 20130731
Length = 493
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 22/189 (11%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L + F+ + + + +D +TGR+ +G+V F+ P A+ I V+
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDP--AVADIVVQ 65
Query: 74 NHSMLNGKVIRV--LWSRRDPDVRKSCIGN------------VFVKNLAESVDSSGLEEI 119
++G+++ R D +V G+ +FV LA +V S ++
Sbjct: 66 EKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
Query: 120 FKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK 177
F ++G I + VVM D + +G+GF+ ++SEE+ + + K +N K + V R V
Sbjct: 126 FDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTF-HELNGKMVEVKRAVP 183
Query: 178 KSERILPGP 186
K + PGP
Sbjct: 184 K--ELSPGP 190
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 17/188 (9%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L+E FS++G++ I KD G ++GFGFV + +P A ++
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN----IYVKNIDDNVSD 307
+ + +++ A+K R+ + + I G I+V + V++
Sbjct: 68 H--NIDGRMV---EAKKAVPRD---DQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTE 119
Query: 308 EELRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKA-VNTFHGFMFHGKPLY 365
+ + +F G+IT VM D +GFGF+ + + E ++ + TFH +GK +
Sbjct: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFH--ELNGKMVE 177
Query: 366 VALAQRKE 373
V A KE
Sbjct: 178 VKRAVPKE 185
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 35/270 (12%)
Query: 96 KSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESA 153
+S G +F+ ++ + L E F YG + + V+M D G+++G+GFV F A
Sbjct: 2 QSDSGKLFIGGISWDTNEERLREYFSTYGEVKEA-VIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 154 NAAI-EKLNGSTINDKQIYVGRFVKKSERIL-----------PGPDASYTNLYMKNLDLD 201
+ + EK N I+ + + + V + ++ + PGP + +++ L
Sbjct: 61 DIVVQEKHN---IDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRT-RKIFVGGLAST 116
Query: 202 ITEALLKEKFSSFGKIVSLAISKDENGM-SKGFGFVNYENPDDAKRALEAMNGSQLGSKI 260
+TE+ K+ F FG I + + D N +GFGF+ Y++ + + L +L K+
Sbjct: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTF-HELNGKM 175
Query: 261 LYVARAQKK-----AERERILNHQFEEKRKEQILK-----YKGSNI--YVKNIDDNVSD- 307
+ V RA K R + + + R L Y S + Y +D S
Sbjct: 176 VEVKRAVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPV 235
Query: 308 EELRDHFSACGSITSAKVMKDEKGISKGFG 337
R+ ++ GS M E G+S GFG
Sbjct: 236 AGGRNAYAPFGS-GYGMGMNFEPGLSPGFG 264
>Medtr5g097580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:42749843-42754792 | 20130731
Length = 479
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 95/189 (50%), Gaps = 22/189 (11%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L + F+ + + + +D +TGR+ +G+V F+ P A+ I V+
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDP--AVADIVVQ 65
Query: 74 NHSMLNGKVIRV--LWSRRDPDVRKSCIGN------------VFVKNLAESVDSSGLEEI 119
++G+++ R D +V G+ +FV LA +V S ++
Sbjct: 66 EKHNIDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKY 125
Query: 120 FKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK 177
F ++G I + VVM D + +G+GF+ ++SEE+ + + K +N K + V R V
Sbjct: 126 FDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTF-HELNGKMVEVKRAVP 183
Query: 178 KSERILPGP 186
K + PGP
Sbjct: 184 K--ELSPGP 190
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 88/188 (46%), Gaps = 17/188 (9%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L+E FS++G++ I KD G ++GFGFV + +P A ++
Sbjct: 8 LFIGGISWDTNEERLREYFSTYGEVKEAVIMKDRTTGRARGFGFVVFIDPAVADIVVQEK 67
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSN----IYVKNIDDNVSD 307
+ + +++ A+K R+ + + I G I+V + V++
Sbjct: 68 H--NIDGRMV---EAKKAVPRD---DQNVLSRTSGSIHGSPGPGRTRKIFVGGLASTVTE 119
Query: 308 EELRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKA-VNTFHGFMFHGKPLY 365
+ + +F G+IT VM D +GFGF+ + + E ++ + TFH +GK +
Sbjct: 120 SDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTFH--ELNGKMVE 177
Query: 366 VALAQRKE 373
V A KE
Sbjct: 178 VKRAVPKE 185
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/270 (24%), Positives = 116/270 (42%), Gaps = 35/270 (12%)
Query: 96 KSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESA 153
+S G +F+ ++ + L E F YG + + V+M D G+++G+GFV F A
Sbjct: 2 QSDSGKLFIGGISWDTNEERLREYFSTYGEVKEA-VIMKDRTTGRARGFGFVVFIDPAVA 60
Query: 154 NAAI-EKLNGSTINDKQIYVGRFVKKSERIL-----------PGPDASYTNLYMKNLDLD 201
+ + EK N I+ + + + V + ++ + PGP + +++ L
Sbjct: 61 DIVVQEKHN---IDGRMVEAKKAVPRDDQNVLSRTSGSIHGSPGPGRT-RKIFVGGLAST 116
Query: 202 ITEALLKEKFSSFGKIVSLAISKDENGM-SKGFGFVNYENPDDAKRALEAMNGSQLGSKI 260
+TE+ K+ F FG I + + D N +GFGF+ Y++ + + L +L K+
Sbjct: 117 VTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDQVLLKTF-HELNGKM 175
Query: 261 LYVARAQKK-----AERERILNHQFEEKRKEQILK-----YKGSNI--YVKNIDDNVSD- 307
+ V RA K R + + + R L Y S + Y +D S
Sbjct: 176 VEVKRAVPKELSPGPARSPLSGYNYGLSRVNSFLNGFNQSYSPSTVGGYGLRVDGRFSPV 235
Query: 308 EELRDHFSACGSITSAKVMKDEKGISKGFG 337
R+ ++ GS M E G+S GFG
Sbjct: 236 AGGRNAYAPFGS-GYGMGMNFEPGLSPGFG 264
>Medtr8g076100.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr8:32212286-32219222 | 20130731
Length = 989
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 19/263 (7%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
++VG L D ++ L F + VR+ ++SST ++ Y V F + + A +A+
Sbjct: 420 IFVGGLDRDTTEEDLKKIFQRIGEVLEVRLHKNSSTSKNRGYAVVRFANKEHAKKALSEM 479
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+ ++ GK S D D +F+ N+ + +++ K YG + +
Sbjct: 480 KNPVIRGKRCGTSPS-EDNDT-------LFLGNICNTWTKEAVKQKLKDYGVEGVENITL 531
Query: 134 ADD----GKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERIL-PGPD- 187
D G S+G+ F++F A A ++L + V +E I P P+
Sbjct: 532 VPDVQHEGLSRGFAFLEFSCHADAMLAYKRLQKPGVIFGHAERTAKVAFAEPIREPDPEI 591
Query: 188 -ASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAK 245
A ++++ L L E ++E S+G+IV + +++ K GFV++ + A
Sbjct: 592 MAQVKSVFINGLPLHWDEDHVREHLKSYGEIVKIVLARKMSTSKRKDHGFVDFSTHEAAL 651
Query: 246 RALEAMNGSQLG---SKILYVAR 265
++ +N S+LG SKI AR
Sbjct: 652 ACVDGVNKSELGDGTSKIKLRAR 674
>Medtr8g463890.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:22547309-22542060 | 20130731
Length = 445
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 186 PDASYTNLYMKNLDLDITEALLKEKFSSFGKI-VSLAISKDENGMSKGFGFVNYENPDDA 244
PD S L+++ L D T L+ FS++G++ ++ I G SKG+GFV + + D A
Sbjct: 68 PDISRRKLFIRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGA 127
Query: 245 KRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDN 304
AL + ++ ++ V + N +RK IYV N+ +
Sbjct: 128 LLALREPS-KRIDGRVT-VTQLAAAGNSGSNTNAADVAQRK----------IYVSNVPPD 175
Query: 305 VSDEELRDHFSACGSITSAKVMKDEK-GISKGFGFVCFSTPEEANKAVN 352
+ ++L HFS G I + D++ G SKGF + TPE AN AV+
Sbjct: 176 LPGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGANAAVS 224
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 29/233 (12%)
Query: 61 LSPQDAMQAIEVKNH----SMLNGKVIR---VLWSRR---DPDVRKSCIGNVFVKNLAES 110
LSP + + IE ++L V+R VL + R DPD+ + +F++ L
Sbjct: 27 LSPSEGRKLIERFTPDQLINILQDAVVRHPDVLSAVRAVVDPDISRR---KLFIRGLGWD 83
Query: 111 VDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI----EKLNGST 164
+ GL +F YG L +V+ D GKSKGYGFV F + A A+ ++++G
Sbjct: 84 TTTEGLRSLFSTYGE-LEEAIVIVDKATGKSKGYGFVTFLHVDGALLALREPSKRIDGRV 142
Query: 165 INDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISK 224
+ G + D + +Y+ N+ D+ L FS +G+I +
Sbjct: 143 TVTQLAAAGNSGSNTNAA----DVAQRKIYVSNVPPDLPGDKLLAHFSIYGEIEEGPLGF 198
Query: 225 D-ENGMSKGFGFVNYENPDDAKRA----LEAMNGSQLGSKILYVARAQKKAER 272
D + G SKGF Y+ P+ A A ++ + G QL K+ +++ R
Sbjct: 199 DKQTGRSKGFALFVYKTPEGANAAVSEPVKNVEGRQLNCKLAITDGGKQQGMR 251
>Medtr4g074930.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 600
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L++ NL + + +++ F G++V + S DE G KGFG V + + + A+ ALE M
Sbjct: 342 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE-M 400
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG +L + + + A+ ER + + + + ++V+ D N+ ++E+R
Sbjct: 401 NGQELLQRAVRLDLAR---ERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIR 457
Query: 312 ----DHF-SACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
+HF CG T + KD E G SKGF ++ F + +KA+ H G L
Sbjct: 458 AKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE-LHESELDGYQLS 516
Query: 366 VALAQRKE 373
V A+ ++
Sbjct: 517 VDEAKPRD 524
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 22/176 (12%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NL+ SV S +E+ F+ G ++ + ++G+ KG+G V+F S E+A +A+E +
Sbjct: 342 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE-M 400
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNL--------------YMKNLDLDITEAL 206
NG + + + + ++ P +++Y+ + KNL D A
Sbjct: 401 NGQELLQRAVRLD-LARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 459
Query: 207 LKEKF-SSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE----AMNGSQL 256
L E F + G+ ++I KD E+G SKGF ++++++ D +ALE ++G QL
Sbjct: 460 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQL 515
>Medtr4g074930.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 588
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L++ NL + + +++ F G++V + S DE G KGFG V + + + A+ ALE M
Sbjct: 330 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE-M 388
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG +L + + + A+ ER + + + + ++V+ D N+ ++E+R
Sbjct: 389 NGQELLQRAVRLDLAR---ERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIR 445
Query: 312 ----DHF-SACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
+HF CG T + KD E G SKGF ++ F + +KA+ H G L
Sbjct: 446 AKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE-LHESELDGYQLS 504
Query: 366 VALAQRKE 373
V A+ ++
Sbjct: 505 VDEAKPRD 512
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 22/176 (12%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NL+ SV S +E+ F+ G ++ + ++G+ KG+G V+F S E+A +A+E +
Sbjct: 330 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE-M 388
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNL--------------YMKNLDLDITEAL 206
NG + + + + ++ P +++Y+ + KNL D A
Sbjct: 389 NGQELLQRAVRLD-LARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 447
Query: 207 LKEKF-SSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE----AMNGSQL 256
L E F + G+ ++I KD E+G SKGF ++++++ D +ALE ++G QL
Sbjct: 448 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQL 503
>Medtr4g074930.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567458-28562229 | 20130731
Length = 635
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L++ NL + + +++ F G++V + S DE G KGFG V + + + A+ ALE M
Sbjct: 377 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE-M 435
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG +L + + + A+ ER + + + + ++V+ D N+ ++E+R
Sbjct: 436 NGQELLQRAVRLDLAR---ERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIR 492
Query: 312 ----DHF-SACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
+HF CG T + KD E G SKGF ++ F + +KA+ H G L
Sbjct: 493 AKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE-LHESELDGYQLS 551
Query: 366 VALAQRKE 373
V A+ ++
Sbjct: 552 VDEAKPRD 559
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 22/176 (12%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NL+ SV S +E+ F+ G ++ + ++G+ KG+G V+F S E+A +A+E +
Sbjct: 377 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE-M 435
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNL--------------YMKNLDLDITEAL 206
NG + + + + ++ P +++Y+ + KNL D A
Sbjct: 436 NGQELLQRAVRLD-LARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 494
Query: 207 LKEKF-SSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE----AMNGSQL 256
L E F + G+ ++I KD E+G SKGF ++++++ D +ALE ++G QL
Sbjct: 495 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQL 550
>Medtr4g074930.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:28567463-28562229 | 20130731
Length = 623
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
L++ NL + + +++ F G++V + S DE G KGFG V + + + A+ ALE M
Sbjct: 365 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE-M 423
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
NG +L + + + A+ ER + + + + ++V+ D N+ ++E+R
Sbjct: 424 NGQELLQRAVRLDLAR---ERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIR 480
Query: 312 ----DHF-SACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLY 365
+HF CG T + KD E G SKGF ++ F + +KA+ H G L
Sbjct: 481 AKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE-LHESELDGYQLS 539
Query: 366 VALAQRKE 373
V A+ ++
Sbjct: 540 VDEAKPRD 547
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 92/176 (52%), Gaps = 22/176 (12%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
+FV NL+ SV S +E+ F+ G ++ + ++G+ KG+G V+F S E+A +A+E +
Sbjct: 365 TLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALE-M 423
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNL--------------YMKNLDLDITEAL 206
NG + + + + ++ P +++Y+ + KNL D A
Sbjct: 424 NGQELLQRAVRLD-LARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAK 482
Query: 207 LKEKF-SSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALE----AMNGSQL 256
L E F + G+ ++I KD E+G SKGF ++++++ D +ALE ++G QL
Sbjct: 483 LMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQL 538
>Medtr2g026180.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465398-9461370 | 20130731
Length = 481
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 5/166 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L++ F +FG +V I KD G ++GFGFV + +P A+R + M
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ + + +A + ++ + I+V + V++ + +
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 312 DHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFH 355
++F G+IT VM D +GFGF+ + + E K ++ TFH
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH 169
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 30/194 (15%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L F F ++ + +D +TGR+ +G+V F P A + + K
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 74 NHSMLNGKVIRV--LWSRRDPDV----RKSCIGN----------VFVKNLAESVDSSGLE 117
+ +++G+ + R D +V S G+ +FV LA +V S +
Sbjct: 66 H--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 118 EIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGST---INDKQIYV 172
F ++G I + VVM D + +G+GF+ ++SEE A+EK+ T +N K + V
Sbjct: 124 NYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEE----AVEKVLHKTFHELNGKMVEV 178
Query: 173 GRFVKKSERILPGP 186
R V K + P P
Sbjct: 179 KRAVPKD--LSPSP 190
>Medtr2g026180.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465402-9461271 | 20130731
Length = 481
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 5/166 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L++ F +FG +V I KD G ++GFGFV + +P A+R + M
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ + + +A + ++ + I+V + V++ + +
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 312 DHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFH 355
++F G+IT VM D +GFGF+ + + E K ++ TFH
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH 169
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 30/194 (15%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L F F ++ + +D +TGR+ +G+V F P A + + K
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 74 NHSMLNGKVIRV--LWSRRDPDV----RKSCIGN----------VFVKNLAESVDSSGLE 117
+ +++G+ + R D +V S G+ +FV LA +V S +
Sbjct: 66 H--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 118 EIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGST---INDKQIYV 172
F ++G I + VVM D + +G+GF+ ++SEE A+EK+ T +N K + V
Sbjct: 124 NYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEE----AVEKVLHKTFHELNGKMVEV 178
Query: 173 GRFVKKSERILPGP 186
R V K + P P
Sbjct: 179 KRAVPKD--LSPSP 190
>Medtr2g026180.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:9465359-9461307 | 20130731
Length = 481
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 77/166 (46%), Gaps = 5/166 (3%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E L++ F +FG +V I KD G ++GFGFV + +P A+R + M
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVV--M 63
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ + + +A + ++ + I+V + V++ + +
Sbjct: 64 EKHVIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 312 DHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAVN-TFH 355
++F G+IT VM D +GFGF+ + + E K ++ TFH
Sbjct: 124 NYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLHKTFH 169
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 30/194 (15%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D ++ +L F F ++ + +D +TGR+ +G+V F P A + + K
Sbjct: 6 LFIGGISWDTNEDRLRQYFQNFGDVVEAVIMKDRTTGRARGFGFVVFADPSVAERVVMEK 65
Query: 74 NHSMLNGKVIRV--LWSRRDPDV----RKSCIGN----------VFVKNLAESVDSSGLE 117
+ +++G+ + R D +V S G+ +FV LA +V S +
Sbjct: 66 H--VIDGRTVEAKKAVPRDDQNVFTRSNSSSHGSPAPTPIRTKKIFVGGLASTVTESDFK 123
Query: 118 EIFKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGST---INDKQIYV 172
F ++G I + VVM D + +G+GF+ ++SEE A+EK+ T +N K + V
Sbjct: 124 NYFDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEE----AVEKVLHKTFHELNGKMVEV 178
Query: 173 GRFVKKSERILPGP 186
R V K + P P
Sbjct: 179 KRAVPKD--LSPSP 190
>Medtr5g030020.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:12627820-12622359 | 20130731
Length = 324
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 90/178 (50%), Gaps = 10/178 (5%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
N+ V NL S+ ++++F + G ++ +++ + DGK KGY FV +S E A AA++K
Sbjct: 97 NLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 161 NGSTINDKQIYVGRFVK------KSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSF 214
N + I+ + + V F K +A Y +Y NL L++ F+
Sbjct: 157 NATEISGRILRV-EFAKGFKKPRPPPPAPTPKEARYV-IYASNLAWKARSTHLRDIFTEN 214
Query: 215 GK--IVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKA 270
K + + + + G S G+GFV+Y ++A+ A+ A+ G +L + L V +++K
Sbjct: 215 FKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISERKV 272
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 10/183 (5%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAM 251
NL + NL +++ +K+ F G ++ + I K ++G KG+ FV ++ + A+ A++
Sbjct: 97 NLIVFNLPWSLSKPDIKDLFGQCGTVIDVEIIKSKDGKGKGYTFVTMDSGEGAQAAVDKF 156
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
N +++ +IL V A+ + ++ + I Y N+ LR
Sbjct: 157 NATEISGRILRVEFAKGFKKPRPPPPAPTPKEARYVI--------YASNLAWKARSTHLR 208
Query: 312 DHFSAC--GSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
D F+ +++ V + G S G+GFV + T EEA A++ G G+PL V ++
Sbjct: 209 DIFTENFKTPVSARVVFQVPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKIS 268
Query: 370 QRK 372
+RK
Sbjct: 269 ERK 271
>Medtr7g013730.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986546-3983001 | 20130731
Length = 253
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 94 VRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEES 152
+R +F+ ++ S D +GL E F +YG++L +K++M D G+S+G+GF+ F + E
Sbjct: 34 IRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEE 93
Query: 153 ANAAIEKLNGSTINDKQIYVGRFVKKSERILPG 185
A++A++ ++ ++ + + R +ER PG
Sbjct: 94 ASSALQAMDNKELDGRTV---RVNYATERARPG 123
>Medtr7g013730.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3986488-3983001 | 20130731
Length = 253
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 94 VRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEES 152
+R +F+ ++ S D +GL E F +YG++L +K++M D G+S+G+GF+ F + E
Sbjct: 34 IRSMSSAKLFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEE 93
Query: 153 ANAAIEKLNGSTINDKQIYVGRFVKKSERILPG 185
A++A++ ++ ++ + + R +ER PG
Sbjct: 94 ASSALQAMDNKELDGRTV---RVNYATERARPG 123
>Medtr4g068120.2 | flowering time control FPA-like protein | HC |
chr4:25458538-25448035 | 20130731
Length = 973
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 43/281 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
N++V NL+ V S L ++F +YG + S A + Y FV F+ + A AA L
Sbjct: 28 NLYVANLSPDVTDSDLMDLFVQYGALDSVTSYSA-----RNYAFVFFKRIDDAKAAKNAL 82
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
G + + F + P + L++ + +T+ L+ F FGK+
Sbjct: 83 QGFNFRGNSLRI-EFAR--------PAKTCKQLWVGGISPAVTKEDLEADFRKFGKVEDF 133
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK-AERERILNH- 278
+D N V + N DDA +A++ MNG +G + + V + A+R++ L++
Sbjct: 134 KFFRDRNTAC-----VEFFNLDDAIQAMKIMNGKHIGGENIRVDFLRSNYAKRDQGLDYG 188
Query: 279 QFEEK---------------RKEQILKYKG----SNIYVKNIDDNVSDEELRDHFSACGS 319
QF+ K + +++ KG +NI NV +E H +
Sbjct: 189 QFQGKSFGPSDSYSGHKRPLNSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAM--- 245
Query: 320 ITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
I ++ + + S+ F FV F + +EA +A G +F+
Sbjct: 246 ILFGEIERIKSVPSRNFSFVEFRSVDEARRAKEGLQGRLFN 286
>Medtr4g068120.1 | flowering time control FPA-like protein | HC |
chr4:25458538-25450507 | 20130731
Length = 973
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 121/281 (43%), Gaps = 43/281 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKL 160
N++V NL+ V S L ++F +YG + S A + Y FV F+ + A AA L
Sbjct: 28 NLYVANLSPDVTDSDLMDLFVQYGALDSVTSYSA-----RNYAFVFFKRIDDAKAAKNAL 82
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL 220
G + + F + P + L++ + +T+ L+ F FGK+
Sbjct: 83 QGFNFRGNSLRI-EFAR--------PAKTCKQLWVGGISPAVTKEDLEADFRKFGKVEDF 133
Query: 221 AISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKK-AERERILNH- 278
+D N V + N DDA +A++ MNG +G + + V + A+R++ L++
Sbjct: 134 KFFRDRNTAC-----VEFFNLDDAIQAMKIMNGKHIGGENIRVDFLRSNYAKRDQGLDYG 188
Query: 279 QFEEK---------------RKEQILKYKG----SNIYVKNIDDNVSDEELRDHFSACGS 319
QF+ K + +++ KG +NI NV +E H +
Sbjct: 189 QFQGKSFGPSDSYSGHKRPLNSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAM--- 245
Query: 320 ITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFH 360
I ++ + + S+ F FV F + +EA +A G +F+
Sbjct: 246 ILFGEIERIKSVPSRNFSFVEFRSVDEARRAKEGLQGRLFN 286
>Medtr3g099590.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
+ S T L +N+ T ++ F +GK++ + +S ++G FV +P++A
Sbjct: 85 ELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEEASE 144
Query: 247 ALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVS 306
AL ++ + +I+ + A+ K E+ + + + Y N++V N
Sbjct: 145 ALNSLQSYEFDGRIINIQYAKPKKEKIP-------PPVERKPITY---NLFVANFPYEAR 194
Query: 307 DEELRDHF-SACGSITSAKVMKDEKGIS-KGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
+++++ F S G + SA+V+ E G+GFV + + +EA++A+ F G F G+PL
Sbjct: 195 SKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPL 254
Query: 365 YVALAQR 371
VA ++R
Sbjct: 255 RVAPSKR 261
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+ +N+ S + + +F+KYG +L ++ M + +++G FV+ S E A+ A+ L
Sbjct: 91 LLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEEASEALNSLQ 150
Query: 162 GSTINDKQI---YVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSS-FGKI 217
+ + I Y +K + +Y NL++ N + +KE F S GK+
Sbjct: 151 SYEFDGRIINIQYAKPKKEKIPPPVERKPITY-NLFVANFPYEARSKDVKEFFDSGTGKV 209
Query: 218 VSLAISKDENGMS-KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
VS + EN G+GFV+Y++ +A AL G + L VA +++
Sbjct: 210 VSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRVAPSKR 261
>Medtr3g099590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:45657608-45655484 | 20130731
Length = 290
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 12/187 (6%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKR 246
+ S T L +N+ T ++ F +GK++ + +S ++G FV +P++A
Sbjct: 85 ELSTTRLLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEEASE 144
Query: 247 ALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVS 306
AL ++ + +I+ + A+ K E+ + + + Y N++V N
Sbjct: 145 ALNSLQSYEFDGRIINIQYAKPKKEKIP-------PPVERKPITY---NLFVANFPYEAR 194
Query: 307 DEELRDHF-SACGSITSAKVMKDEKGIS-KGFGFVCFSTPEEANKAVNTFHGFMFHGKPL 364
+++++ F S G + SA+V+ E G+GFV + + +EA++A+ F G F G+PL
Sbjct: 195 SKDVKEFFDSGTGKVVSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPL 254
Query: 365 YVALAQR 371
VA ++R
Sbjct: 255 RVAPSKR 261
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 6/172 (3%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+ +N+ S + + +F+KYG +L ++ M + +++G FV+ S E A+ A+ L
Sbjct: 91 LLAQNVPWSSTTEDVRSLFEKYGKVLHVELSMYNKNRNRGLAFVEMGSPEEASEALNSLQ 150
Query: 162 GSTINDKQI---YVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSS-FGKI 217
+ + I Y +K + +Y NL++ N + +KE F S GK+
Sbjct: 151 SYEFDGRIINIQYAKPKKEKIPPPVERKPITY-NLFVANFPYEARSKDVKEFFDSGTGKV 209
Query: 218 VSLAISKDENGMS-KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQK 268
VS + EN G+GFV+Y++ +A AL G + L VA +++
Sbjct: 210 VSAEVIFHENPRRPSGYGFVSYKSKKEADEALAEFQGKNFMGRPLRVAPSKR 261
>Medtr3g055990.1 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22250364 | 20130731
Length = 481
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E LKE F+++G+++ I +D G ++GFGFV + +P A+R + +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--I 65
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ + + + +A + +++ I + + K I+V + +++ + +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTK--KIFVGGLPSTITESDFK 123
Query: 312 DHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAV-NTFHGFMFHGKPLYVALA 369
+F G+IT VM D +GFGF+ + + E ++ + TFH +GK + V A
Sbjct: 124 MYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFH--ELNGKMVEVKRA 181
Query: 370 QRKE 373
KE
Sbjct: 182 VPKE 185
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + +L + FA + + + RD +TGR+ +G+V F P A + I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-ID 66
Query: 74 NHSMLNGKVIRVL----------WSRRDPDVRKSC----IGNVFVKNLAESVDSSGLEEI 119
H +++G+ + +R+ V+ S +FV L ++ S +
Sbjct: 67 KH-IIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 120 FKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK 177
F ++G I + VVM D + +G+GF+ ++SEE+ + + K +N K + V R V
Sbjct: 126 FDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTF-HELNGKMVEVKRAVP 183
Query: 178 KSERILPGPDAS 189
K + PGP S
Sbjct: 184 K--ELSPGPTRS 193
>Medtr3g055990.2 | heterogeneous nuclear ribonucleoprotein 27C,
putative | HC | chr3:22254761-22251454 | 20130731
Length = 478
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 91/184 (49%), Gaps = 9/184 (4%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + D E LKE F+++G+++ I +D G ++GFGFV + +P A+R + +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI--I 65
Query: 252 NGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELR 311
+ + + + +A + +++ I + + K I+V + +++ + +
Sbjct: 66 DKHIIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTK--KIFVGGLPSTITESDFK 123
Query: 312 DHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANKAV-NTFHGFMFHGKPLYVALA 369
+F G+IT VM D +GFGF+ + + E ++ + TFH +GK + V A
Sbjct: 124 MYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFH--ELNGKMVEVKRA 181
Query: 370 QRKE 373
KE
Sbjct: 182 VPKE 185
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G + D + +L + FA + + + RD +TGR+ +G+V F P A + I +
Sbjct: 8 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVI-ID 66
Query: 74 NHSMLNGKVIRVL----------WSRRDPDVRKSC----IGNVFVKNLAESVDSSGLEEI 119
H +++G+ + +R+ V+ S +FV L ++ S +
Sbjct: 67 KH-IIDGRTVEAKKAVPRDDQQNINRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMY 125
Query: 120 FKKYGNILSSKVVMADDG--KSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVK 177
F ++G I + VVM D + +G+GF+ ++SEE+ + + K +N K + V R V
Sbjct: 126 FDQFGTI-TDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTF-HELNGKMVEVKRAVP 183
Query: 178 KSERILPGPDAS 189
K + PGP S
Sbjct: 184 K--ELSPGPTRS 193
>Medtr4g070080.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374412-26375716 | 20130731
Length = 161
Score = 61.6 bits (148), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 93 DVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEE 151
DV C FV LA + D+ LE+ F +YG I+ SK++ + G+S+G+GFV F +E+
Sbjct: 3 DVEYRC----FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEK 58
Query: 152 SANAAIEKLNGSTINDKQIYVGR 174
S N AIE +NG ++ + I V +
Sbjct: 59 SMNDAIEAMNGQDLDGRNITVNQ 81
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 207 LKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVAR 265
L++ FS +G+IV I D E G S+GFGFV + N A+EAMNG L + + V +
Sbjct: 22 LEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQ 81
Query: 266 AQ 267
AQ
Sbjct: 82 AQ 83
>Medtr4g070080.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26374538-26375597 | 20130731
Length = 128
Score = 61.2 bits (147), Expect = 3e-09, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 5/83 (6%)
Query: 93 DVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEE 151
DV C FV LA + D+ LE+ F +YG I+ SK++ + G+S+G+GFV F +E+
Sbjct: 3 DVEYRC----FVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEK 58
Query: 152 SANAAIEKLNGSTINDKQIYVGR 174
S N AIE +NG ++ + I V +
Sbjct: 59 SMNDAIEAMNGQDLDGRNITVNQ 81
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 207 LKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVAR 265
L++ FS +G+IV I D E G S+GFGFV + N A+EAMNG L + + V +
Sbjct: 22 LEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQ 81
Query: 266 AQ 267
AQ
Sbjct: 82 AQ 83
>Medtr4g052940.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:19205591-19210680 | 20130731
Length = 354
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/267 (24%), Positives = 116/267 (43%), Gaps = 33/267 (12%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDG-KSKGYGFVQFESEESANAAIEKL 160
V+V + S L+E ++ G ++ +++ D ++KG+ FV + + E A+ AIE+L
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 161 NGSTINDKQIYVGRFVKKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGK-IVS 219
N + + GR +K S + L++ N+ E LK+ + G + +
Sbjct: 172 NNTE------FKGRKIKCST------SQAKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTA 219
Query: 220 LAISKDENGMS--KGFGFVNYENPDDAKRALEAMNGS--QLGSKILYVARAQKKAERERI 275
+ + KD +S +GF F++Y N A+ + M +LG V+ A
Sbjct: 220 VELVKDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWA--------- 270
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKG 335
+ K + + +YVKN+ NV+ E+L+ F G IT + + G K
Sbjct: 271 -----DPKNSDSSASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKN 325
Query: 336 -FGFVCFSTPEEANKAVNTFHGFMFHG 361
GFV F+ A KA+ + G
Sbjct: 326 RIGFVHFAERSNAMKALKNTERYELDG 352
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 110/246 (44%), Gaps = 24/246 (9%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+YVG + D L + + VR+ + + + +V + + + A +AIE
Sbjct: 112 VYVGGIPLDAKSEDLKEFCERIGEVVQVRIMKGKDASENKGFAFVTYRNVELASKAIEEL 171
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYG-NILSSKVV 132
N++ G+ I+ S+ +F+ N+ S L+++ G + + ++V
Sbjct: 172 NNTEFKGRKIKCSTSQ--------AKNRLFIGNIPRSWGEKDLKKVVTDIGPGVTAVELV 223
Query: 133 --MADDGKSKGYGFVQFESEESANAAIEKLNGST--INDKQIYVGRFVKKSERILPGPDA 188
M + ++G+ F+ + + + A +K+ + + D V K+ D+
Sbjct: 224 KDMKNISNNRGFAFIDYHNNQCAEYGRQKMMSPSFKLGDNSPTVSWADPKNS------DS 277
Query: 189 SYTN----LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKG-FGFVNYENPDD 243
S ++ +Y+KNL ++T+ LK+ F GKI + + ++G K GFV++ +
Sbjct: 278 SASSQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPPKSGQEKNRIGFVHFAERSN 337
Query: 244 AKRALE 249
A +AL+
Sbjct: 338 AMKALK 343
>Medtr4g070140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26401562-26402849 | 20130731
Length = 190
Score = 60.5 bits (145), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/81 (43%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 93 DVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEE 151
DV C FV LA + DS LE+ F K+G I SKV+ + G+S+G+GFV F E+
Sbjct: 5 DVEYRC----FVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEK 60
Query: 152 SANAAIEKLNGSTINDKQIYV 172
S AIE++NG I+ + I V
Sbjct: 61 SMRDAIEEMNGQDIDGRNITV 81
>Medtr7g013740.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:3990787-3988732 | 20130731
Length = 148
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 94 VRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEES 152
+R ++V ++ S D +GL E F +YG++L ++V++ + G+SKG+GFV F + E
Sbjct: 34 IRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEE 93
Query: 153 ANAAIEKLNGSTINDKQIYV 172
A+AA++ ++ ++ + + V
Sbjct: 94 ASAALQAMDNQELHGRTVRV 113
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 1/88 (1%)
Query: 286 EQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTP 344
+ I + +YV I + D LR+ F+ G + A+V+ D E+G SKGFGFV F+T
Sbjct: 32 QAIRSMSSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATS 91
Query: 345 EEANKAVNTFHGFMFHGKPLYVALAQRK 372
EEA+ A+ HG+ + V AQ +
Sbjct: 92 EEASAALQAMDNQELHGRTVRVNYAQER 119
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 46/79 (58%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
LYVG + DA L ++FA + ++ RV D GRS +G+V F + ++A A++
Sbjct: 42 LYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAALQAM 101
Query: 74 NHSMLNGKVIRVLWSRRDP 92
++ L+G+ +RV +++ P
Sbjct: 102 DNQELHGRTVRVNYAQERP 120
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 189 SYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRA 247
S LY+ + +A L+E F+ +G ++ + D E G SKGFGFV + ++A A
Sbjct: 38 SSAKLYVGGISYSTDDAGLRESFARYGDVLDARVIIDREQGRSKGFGFVTFATSEEASAA 97
Query: 248 LEAMNGSQLGSKILYVARAQKK 269
L+AM+ +L + + V AQ++
Sbjct: 98 LQAMDNQELHGRTVRVNYAQER 119
>Medtr4g070190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr4:26418780-26419998 | 20130731
Length = 164
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 5/81 (6%)
Query: 93 DVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEE 151
DV C FV LA + DS LE+ F +YG I+ SK++ + G+S+G+GFV F E+
Sbjct: 5 DVEYRC----FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
Query: 152 SANAAIEKLNGSTINDKQIYV 172
S AIE +NG ++ + I V
Sbjct: 61 SMRDAIEGMNGQDMDGRNITV 81
>Medtr7g107580.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 362
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 40/258 (15%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + +TE L F F + + I KD+ S+G FV + D+A +A+ A
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 252 NGSQL---GSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
+ + S L V A + ER L H+ +++ + N+S+
Sbjct: 78 HNKKTLPGASSPLQVKYADGELER---LEHK----------------LFIGMLPKNISEV 118
Query: 309 ELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEE---ANKAVNTFHGFMFHGKPLY 365
E+ FS G+I ++++ + SKG F+ + T E+ A +A+N H PL
Sbjct: 119 EVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 178
Query: 366 VALAQRKEDRQAQLQLQYAQKIAGLAG-----PST-AIIPGGYPPFY----YTATGVVPH 415
V A +++RQA+ + Q AQ A G PS +P GY P Y Y A G
Sbjct: 179 VKWADTEKERQAR-RAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGL 237
Query: 416 VPHRAGLMYQPLAVRPGW 433
+P+R M P+ +PG+
Sbjct: 238 MPYR---MPPPMQNQPGY 252
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIE-V 72
L+VG + +++ +L F EF + V + +D +T S +V S +A +A+
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 73 KNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVV 132
N L G + D ++ + +F+ L +++ + +F KYG I +++
Sbjct: 78 HNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNISEVEVSALFSKYGTIKDLQIL 136
Query: 133 MADDGKSKGYGFVQFESEESANAAIEKLNG 162
SKG F+++E++E A AA+E +NG
Sbjct: 137 RGSQQTSKGCAFLKYETKEQALAALEAING 166
>Medtr7g107580.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890585-43885643 | 20130731
Length = 434
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV 351
G+N+++ +I D+EL + F G + SAKV D+ G+SK FGFV + +PE A A+
Sbjct: 348 GANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 407
Query: 352 NTFHGFMFHGKPLYVALAQRKEDRQ 376
+ +G GK L V Q K D +
Sbjct: 408 SMMNGCQLGGKKLKV---QHKRDNK 429
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
NL++ ++ + + L F FG+++S + D+ G+SK FGFV+Y++P+ A+ A+
Sbjct: 349 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 408
Query: 250 AMNGSQLGSKILYV 263
MNG QLG K L V
Sbjct: 409 MMNGCQLGGKKLKV 422
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 41/259 (15%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + +TE L F F + + I KD+ S+G FV + D+A +A+ A
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 252 NGSQL---GSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
+ + S L V A + ER L H+ +++ + N+S+
Sbjct: 78 HNKKTLPGASSPLQVKYADGELER---LEHK----------------LFIGMLPKNISEV 118
Query: 309 ELRDHFSACGSITSAKVMKDEKGISK-GFGFVCFSTPEE---ANKAVNTFHGFMFHGKPL 364
E+ FS G+I ++++ + SK G F+ + T E+ A +A+N H PL
Sbjct: 119 EVSALFSKYGTIKDLQILRGSQQTSKVGCAFLKYETKEQALAALEAINGKHKMEGSSVPL 178
Query: 365 YVALAQRKEDRQAQLQLQYAQKIAGLAG-----PST-AIIPGGYPPFY----YTATGVVP 414
V A +++RQA+ + Q AQ A G PS +P GY P Y Y A G
Sbjct: 179 VVKWADTEKERQAR-RAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYG 237
Query: 415 HVPHRAGLMYQPLAVRPGW 433
+P+R M P+ +PG+
Sbjct: 238 LMPYR---MPPPMQNQPGY 253
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++ + + D +L +AF F + S +V D +TG S C+G+V++ SP+ A AI +
Sbjct: 351 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 410
Query: 74 NHSMLNGKVIRVLWSR 89
N L GK ++V R
Sbjct: 411 NGCQLGGKKLKVQHKR 426
>Medtr7g107580.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:43890650-43885583 | 20130731
Length = 433
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV 351
G+N+++ +I D+EL + F G + SAKV D+ G+SK FGFV + +PE A A+
Sbjct: 347 GANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAI 406
Query: 352 NTFHGFMFHGKPLYVALAQRKEDRQ 376
+ +G GK L V Q K D +
Sbjct: 407 SMMNGCQLGGKKLKV---QHKRDNK 428
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 115/258 (44%), Gaps = 40/258 (15%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ + +TE L F F + + I KD+ S+G FV + D+A +A+ A
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 252 NGSQL---GSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDE 308
+ + S L V A + ER L H+ +++ + N+S+
Sbjct: 78 HNKKTLPGASSPLQVKYADGELER---LEHK----------------LFIGMLPKNISEV 118
Query: 309 ELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEE---ANKAVNTFHGFMFHGKPLY 365
E+ FS G+I ++++ + SKG F+ + T E+ A +A+N H PL
Sbjct: 119 EVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEQALAALEAINGKHKMEGSSVPLV 178
Query: 366 VALAQRKEDRQAQLQLQYAQKIAGLAG-----PST-AIIPGGYPPFY----YTATGVVPH 415
V A +++RQA+ + Q AQ A G PS +P GY P Y Y A G
Sbjct: 179 VKWADTEKERQAR-RAQKAQSQASNVGHDSQHPSLFGAMPMGYVPPYNGYGYQAPGSYGL 237
Query: 416 VPHRAGLMYQPLAVRPGW 433
+P+R M P+ +PG+
Sbjct: 238 MPYR---MPPPMQNQPGY 252
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
NL++ ++ + + L F FG+++S + D+ G+SK FGFV+Y++P+ A+ A+
Sbjct: 348 ANLFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAIS 407
Query: 250 AMNGSQLGSKILYV 263
MNG QLG K L V
Sbjct: 408 MMNGCQLGGKKLKV 421
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 2/150 (1%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIE-V 72
L+VG + +++ +L F EF + V + +D +T S +V S +A +A+
Sbjct: 18 LFVGQVPKHMTEDELLTLFKEFAIVDEVNIIKDKATRASRGCCFVICPSRDEADKAVNAC 77
Query: 73 KNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVV 132
N L G + D ++ + +F+ L +++ + +F KYG I +++
Sbjct: 78 HNKKTLPGASSPLQVKYADGELER-LEHKLFIGMLPKNISEVEVSALFSKYGTIKDLQIL 136
Query: 133 MADDGKSKGYGFVQFESEESANAAIEKLNG 162
SKG F+++E++E A AA+E +NG
Sbjct: 137 RGSQQTSKGCAFLKYETKEQALAALEAING 166
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++ + + D +L +AF F + S +V D +TG S C+G+V++ SP+ A AI +
Sbjct: 350 LFIYHIPQEFGDQELANAFQPFGRVLSAKVFVDKATGVSKCFGFVSYDSPEAAQSAISMM 409
Query: 74 NHSMLNGKVIRVLWSR 89
N L GK ++V R
Sbjct: 410 NGCQLGGKKLKVQHKR 425
>Medtr4g109540.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527069-45523373 | 20130731
Length = 268
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKL 160
+F+ ++ S D + L E F +YG +L ++++M + G+S+G+GF+ F S E A++AI+ L
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 103
Query: 161 NGSTINDKQIYV 172
+G ++ +++ V
Sbjct: 104 DGQDLHGRRVRV 115
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTF 354
+++ + + + LR+ FS G + A+++ D E G S+GFGF+ F++ EEA+ A+
Sbjct: 44 LFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQAL 103
Query: 355 HGFMFHGKPLYVALAQRK 372
G HG+ + V A +
Sbjct: 104 DGQDLHGRRVRVNYANER 121
>Medtr3g103420.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:47715877-47717644 | 20130731
Length = 371
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 16/180 (8%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENG-MSKGFGFVNYENPDDAK 245
D+ L++ + + TE LK F+ +G ++ IS D + +GFGFV + + A
Sbjct: 6 DSDKAKLFVGGISRETTEDTLKHHFTKYGDVLHSTISFDRTTRIPRGFGFVTFSDISSAH 65
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERIL--------NHQFEEKRKEQILKYKGSNIY 297
AL+ + + LG K+ V +A ++E+ + ++ E E I K I+
Sbjct: 66 NALQDTH-AILGRKVE-VRKAIPRSEQLQQNQLQNRGGNSYSGYECGNEHIRTKK---IF 120
Query: 298 VKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKA-VNTFH 355
V + N+S EE + +F G IT VM+D +GFGF+ F + + + +FH
Sbjct: 121 VGGLPANMSVEEFKRYFERFGRITDVVVMQDSLTHRPRGFGFITFDSEDSVQSVMMRSFH 180
>Medtr7g088140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL-AISKDENGMSKGFGFVNYENPDDAK 245
DAS+ +++ L D T A L FS +G+I A++ +G SKG+GF+ ++ A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
AL+ ++G+++ A ++ + +Y IY+ N+ +
Sbjct: 183 NALKEPQ-KKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPEL 241
Query: 306 SDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV----NTFHGFMFH 360
++L FS G I + D+ G KGF + + E A +A+ F G + H
Sbjct: 242 DAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILH 301
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI--- 157
+FV L S+ L F +YG I K V GKSKGYGF+ F+ A A+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 158 EKLNGSTINDKQIYVGRFVKKS--------ERILPGPDASYTNLYMKNLDLDITEALLKE 209
+K G+ + Q+ V+++ ++ G + + +Y+ N+ ++ L
Sbjct: 189 QKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFG 248
Query: 210 KFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
FS FG+I + D+ G KGF Y++ + A+RALE
Sbjct: 249 FFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr7g088140.5 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL-AISKDENGMSKGFGFVNYENPDDAK 245
DAS+ +++ L D T A L FS +G+I A++ +G SKG+GF+ ++ A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
AL+ ++G+++ A ++ + +Y IY+ N+ +
Sbjct: 183 NALKEPQ-KKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPEL 241
Query: 306 SDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV----NTFHGFMFH 360
++L FS G I + D+ G KGF + + E A +A+ F G + H
Sbjct: 242 DAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILH 301
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI--- 157
+FV L S+ L F +YG I K V GKSKGYGF+ F+ A A+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 158 EKLNGSTINDKQIYVGRFVKKS--------ERILPGPDASYTNLYMKNLDLDITEALLKE 209
+K G+ + Q+ V+++ ++ G + + +Y+ N+ ++ L
Sbjct: 189 QKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFG 248
Query: 210 KFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
FS FG+I + D+ G KGF Y++ + A+RALE
Sbjct: 249 FFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr7g088140.4 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297914 | 20130731
Length = 490
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL-AISKDENGMSKGFGFVNYENPDDAK 245
DAS+ +++ L D T A L FS +G+I A++ +G SKG+GF+ ++ A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
AL+ ++G+++ A ++ + +Y IY+ N+ +
Sbjct: 183 NALKEPQ-KKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPEL 241
Query: 306 SDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV----NTFHGFMFH 360
++L FS G I + D+ G KGF + + E A +A+ F G + H
Sbjct: 242 DAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILH 301
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI--- 157
+FV L S+ L F +YG I K V GKSKGYGF+ F+ A A+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 158 EKLNGSTINDKQIYVGRFVKKS--------ERILPGPDASYTNLYMKNLDLDITEALLKE 209
+K G+ + Q+ V+++ ++ G + + +Y+ N+ ++ L
Sbjct: 189 QKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFG 248
Query: 210 KFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
FS FG+I + D+ G KGF Y++ + A+RALE
Sbjct: 249 FFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr7g088140.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304385-34297881 | 20130731
Length = 490
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL-AISKDENGMSKGFGFVNYENPDDAK 245
DAS+ +++ L D T A L FS +G+I A++ +G SKG+GF+ ++ A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
AL+ ++G+++ A ++ + +Y IY+ N+ +
Sbjct: 183 NALKEPQ-KKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPEL 241
Query: 306 SDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV----NTFHGFMFH 360
++L FS G I + D+ G KGF + + E A +A+ F G + H
Sbjct: 242 DAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILH 301
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI--- 157
+FV L S+ L F +YG I K V GKSKGYGF+ F+ A A+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 158 EKLNGSTINDKQIYVGRFVKKS--------ERILPGPDASYTNLYMKNLDLDITEALLKE 209
+K G+ + Q+ V+++ ++ G + + +Y+ N+ ++ L
Sbjct: 189 QKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFG 248
Query: 210 KFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
FS FG+I + D+ G KGF Y++ + A+RALE
Sbjct: 249 FFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr8g032590.6 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
++ NLD D ++ ++ F +GKI D + GF F+ E+ DA+ A+ ++
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKI-------DRVDLKSGFAFIYMEDERDAEYAIRRLD 56
Query: 253 GSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGS-NIYVKNIDD-NVSDEEL 310
++ G K + KAER+ N + K+ K S +++ N D + +L
Sbjct: 57 QTEFGRKGRRIRVEWTKAERD---NRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDL 113
Query: 311 RDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
HF G I++ ++ ++ F F+ F T EEA KA+ + F + + V A
Sbjct: 114 ERHFDPYGKISNLRIRRN-------FAFIQFETQEEATKALEATNLSKFMDRVITVEYAI 166
Query: 371 RKED 374
R +D
Sbjct: 167 RDDD 170
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 25/173 (14%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+F NL S +E +F+KYG I +V + G+ F+ E E A AI +L+
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKI--DRVDLK-----SGFAFIYMEDERDAEYAIRRLD 56
Query: 162 GSTINDKQIYVGRFVKKSER--ILPGPDA--SYTN------LYMKNLDLDITEAL-LKEK 210
+ K + K+ER G D+ S TN L++ N D T L+
Sbjct: 57 QTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERH 116
Query: 211 FSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV 263
F +GKI +L I ++ F F+ +E ++A +ALEA N S+ +++ V
Sbjct: 117 FDPYGKISNLRIRRN-------FAFIQFETQEEATKALEATNLSKFMDRVITV 162
>Medtr8g032590.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr8:12497703-12493893 | 20130731
Length = 294
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 84/184 (45%), Gaps = 19/184 (10%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
++ NLD D ++ ++ F +GKI D + GF F+ E+ DA+ A+ ++
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKI-------DRVDLKSGFAFIYMEDERDAEYAIRRLD 56
Query: 253 GSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGS-NIYVKNIDD-NVSDEEL 310
++ G K + KAER+ N + K+ K S +++ N D + +L
Sbjct: 57 QTEFGRKGRRIRVEWTKAERD---NRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDL 113
Query: 311 RDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQ 370
HF G I++ ++ ++ F F+ F T EEA KA+ + F + + V A
Sbjct: 114 ERHFDPYGKISNLRIRRN-------FAFIQFETQEEATKALEATNLSKFMDRVITVEYAI 166
Query: 371 RKED 374
R +D
Sbjct: 167 RDDD 170
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 80/173 (46%), Gaps = 25/173 (14%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
+F NL S +E +F+KYG I +V + G+ F+ E E A AI +L+
Sbjct: 4 IFCGNLDFDARQSDVERLFRKYGKI--DRVDLK-----SGFAFIYMEDERDAEYAIRRLD 56
Query: 162 GSTINDKQIYVGRFVKKSER--ILPGPDA--SYTN------LYMKNLDLDITEAL-LKEK 210
+ K + K+ER G D+ S TN L++ N D T L+
Sbjct: 57 QTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERH 116
Query: 211 FSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV 263
F +GKI +L I ++ F F+ +E ++A +ALEA N S+ +++ V
Sbjct: 117 FDPYGKISNLRIRRN-------FAFIQFETQEEATKALEATNLSKFMDRVITV 162
>Medtr7g088140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr7:34304246-34300290 | 20130731
Length = 492
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSL-AISKDENGMSKGFGFVNYENPDDAK 245
DAS+ +++ L D T A L FS +G+I A++ +G SKG+GF+ ++ A+
Sbjct: 123 DASHRKIFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGAR 182
Query: 246 RALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNIDDNV 305
AL+ ++G+++ A ++ + +Y IY+ N+ +
Sbjct: 183 NALKEPQ-KKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPEL 241
Query: 306 SDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAV----NTFHGFMFH 360
++L FS G I + D+ G KGF + + E A +A+ F G + H
Sbjct: 242 DAQKLFGFFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALEEPHKEFEGHILH 301
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEESANAAI--- 157
+FV L S+ L F +YG I K V GKSKGYGF+ F+ A A+
Sbjct: 129 IFVHGLGWDTTSATLINAFSQYGEIEDCKAVTDKVSGKSKGYGFILFKRRSGARNALKEP 188
Query: 158 EKLNGSTINDKQIYVGRFVKKS--------ERILPGPDASYTNLYMKNLDLDITEALLKE 209
+K G+ + Q+ V+++ ++ G + + +Y+ N+ ++ L
Sbjct: 189 QKKIGNRMTACQLASIGPVQQTPVVAAAPAPLVVAGSEYTQRKIYISNVGPELDAQKLFG 248
Query: 210 KFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
FS FG+I + D+ G KGF Y++ + A+RALE
Sbjct: 249 FFSRFGEIEEGPLGLDKVTGKPKGFCLFVYKSAESARRALE 289
>Medtr1889s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| LC | scaffold1889:421-1063 | 20130731
Length = 88
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDA 66
LYVGDL +++AQL++ + ++ SVRVCRD T SL YGYVNF + +D
Sbjct: 22 LYVGDLERKVNEAQLYEPLYQIGHVISVRVCRDQMTQSSLGYGYVNFSNARDG 74
>Medtr5g088220.3 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP RK +FV L + L F KYG I K V GKSKGY F+ F+
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 150 EESANAAI---EKLNGSTINDKQIY-VGRFVKKSERILPGPDASYTNLYMKNLDLDITEA 205
A+ +K+ G+ Q+ G P + + +++ N+ DI
Sbjct: 216 RTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQ 275
Query: 206 LLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMN 252
L E F FG++ + D+ G KGF Y+ + AK+ALE N
Sbjct: 276 KLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN 323
>Medtr5g088220.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP RK +FV L + L F KYG I K V GKSKGY F+ F+
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 150 EESANAAI---EKLNGSTINDKQIY-VGRFVKKSERILPGPDASYTNLYMKNLDLDITEA 205
A+ +K+ G+ Q+ G P + + +++ N+ DI
Sbjct: 216 RTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQ 275
Query: 206 LLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMN 252
L E F FG++ + D+ G KGF Y+ + AK+ALE N
Sbjct: 276 KLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN 323
>Medtr5g088220.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr5:38253257-38251764 | 20130731
Length = 497
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 91 DPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFES 149
DP RK +FV L + L F KYG I K V GKSKGY F+ F+
Sbjct: 161 DPAHRK-----IFVHGLGWDATAETLTTTFSKYGEIEDCKAVTDKASGKSKGYAFILFKH 215
Query: 150 EESANAAI---EKLNGSTINDKQIY-VGRFVKKSERILPGPDASYTNLYMKNLDLDITEA 205
A+ +K+ G+ Q+ G P + + +++ N+ DI
Sbjct: 216 RTGCRRALKQPQKVIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVSSDIDPQ 275
Query: 206 LLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAMN 252
L E F FG++ + D+ G KGF Y+ + AK+ALE N
Sbjct: 276 KLLEFFKQFGEVDDGPLGLDKATGKPKGFALFVYKTVESAKKALEEPN 323
>Medtr4g109540.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:45527062-45523373 | 20130731
Length = 276
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 81 KVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMA-DDGKS 139
+ IR + S + I ++ V ++ S D + L E F +YG +L ++++M + G+S
Sbjct: 31 QAIRCMCSAPTTKLFIGGILHLSVAGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRS 90
Query: 140 KGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
+G+GF+ F S E A++AI+ L+G ++ +++ V
Sbjct: 91 RGFGFITFNSVEEASSAIQALDGQDLHGRRVRV 123
>Medtr8g092550.1 | CC1-like splicing factor | HC |
chr8:38688579-38694751 | 20130731
Length = 567
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 82/171 (47%), Gaps = 26/171 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEK 159
VF + + E F K G + +++M + + SKG G+++F S AI
Sbjct: 203 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 261
Query: 160 LNGSTINDKQIYVGR--FVKKSER-------------ILPGP-DASYTNLYMKNLDLDIT 203
L+G Q+ +G+ VK SE + GP A LY+ NL ++T
Sbjct: 262 LSG------QLLLGQPVMVKPSEAEKNLVQSNASSGAAVVGPYGAVDRKLYVGNLHFNMT 315
Query: 204 EALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNG 253
EA L+E F FG+I + + D E G KGFGFV + + + AK A +++NG
Sbjct: 316 EANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHAK-AAQSLNG 365
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 87/189 (46%), Gaps = 12/189 (6%)
Query: 174 RFVKKSERILP--GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGM-S 230
RF K E + P P+ ++ + L TE + E FS GK+ + + D N S
Sbjct: 183 RFRDKKENVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 242
Query: 231 KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILK 290
KG G++ + + A+ A++G L + + V K +E E+ L +
Sbjct: 243 KGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNASSGAAVVGP 297
Query: 291 YKGSN--IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEA 347
Y + +YV N+ N+++ LR+ F G I ++ D E G KGFGFV F+ E A
Sbjct: 298 YGAVDRKLYVGNLHFNMTEANLREIFEPFGQIEVVQLPLDMETGHCKGFGFVQFAHLEHA 357
Query: 348 NKAVNTFHG 356
KA + +G
Sbjct: 358 -KAAQSLNG 365
>Medtr8g031560.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:11851079-11853472 | 20130731
Length = 280
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
+ + NL D E L E F +FG + + ++ D+N G S+GFGFVN+ N +DA+RA+ +
Sbjct: 201 VRVTNLSEDTREPDLHELFGTFGSVSRVYVAIDKNTGTSRGFGFVNFVNREDAQRAINKL 260
Query: 252 NGSQLGSKILYVARAQKKA 270
NG + IL V A +
Sbjct: 261 NGYGYDNLILKVEWATPRT 279
>Medtr3g082650.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:37290152-37292326 | 20130731
Length = 352
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 20/150 (13%)
Query: 100 GNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESANAAI 157
G +F+ LA+ + F++YG I S V+M D G+ +G+GF+ + + I
Sbjct: 18 GKIFIGGLAKDTTLEEFVKYFERYGEITDS-VIMKDRHTGRPRGFGFITYADASVVDQVI 76
Query: 158 EKLNGSTINDKQIYVGRFVKKSERILPGPDASYTN------LYMKNLDLDITEALLKEKF 211
++ + INDKQ+ + R + K AS TN +++ + ++E LK F
Sbjct: 77 QENH--IINDKQVEIKRTIPKG--------ASQTNDFKTKKIFVGGIPATVSEDELKIFF 126
Query: 212 SSFGKIVSLAISKDENG-MSKGFGFVNYEN 240
S G +V I +D S+GFGFV +++
Sbjct: 127 SKHGNVVEHEIIRDHTTKRSRGFGFVVFDS 156
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Query: 177 KKSERILPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGF 235
+KS+ G AS +++ L D T + F +G+I I KD + G +GFGF
Sbjct: 4 RKSDNPHSGDGASPGKIFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGF 63
Query: 236 VNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRK-----EQILK 290
+ Y + + ++ E I + Q E KR Q
Sbjct: 64 ITYADASVVDQVIQ---------------------ENHIINDKQVEIKRTIPKGASQTND 102
Query: 291 YKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKG-ISKGFGFVCFSTPEEANK 349
+K I+V I VS++EL+ FS G++ ++++D S+GFGFV F +++K
Sbjct: 103 FKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEIIRDHTTKRSRGFGFVVF----DSDK 158
Query: 350 AVN 352
AV+
Sbjct: 159 AVD 161
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 76/161 (47%), Gaps = 3/161 (1%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
+++G L D + + F + + + +D TGR +G++ + Q I+ +
Sbjct: 20 IFIGGLAKDTTLEEFVKYFERYGEITDSVIMKDRHTGRPRGFGFITYADASVVDQVIQ-E 78
Query: 74 NHSMLNGKV-IRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVV 132
NH + + +V I+ + +FV + +V L+ F K+GN++ +++
Sbjct: 79 NHIINDKQVEIKRTIPKGASQTNDFKTKKIFVGGIPATVSEDELKIFFSKHGNVVEHEII 138
Query: 133 MADDGK-SKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
K S+G+GFV F+S+++ + + N ++D Q+ +
Sbjct: 139 RDHTTKRSRGFGFVVFDSDKAVDNLLADGNMIDMDDTQVEI 179
>Medtr4g088010.1 | heterogeneous nuclear ribonucleoprotein | HC |
chr4:34502474-34498575 | 20130731
Length = 356
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 100/199 (50%), Gaps = 21/199 (10%)
Query: 65 DAMQAIEVKNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYG 124
D +Q+ +++ +L+ +R + + RD RK +FV+ L+ + L +F YG
Sbjct: 49 DLLQSASLQHPDILD--AVRSV-ADRDTTRRK-----LFVRGLSGETTTETLRTVFSSYG 100
Query: 125 NILSSKVVMAD--DGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYVGRFVKKSERI 182
+ L +V+ D G+SKGYGFV + + A A+++ S D ++ V +
Sbjct: 101 D-LDEAIVIFDKATGRSKGYGFVVYRHVDGAVLALKEP--SKKIDGRMTVTQLAAAGST- 156
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENP 241
G D S +++ N+ +++ L +FS +G+I + D+ +G ++GF F Y+
Sbjct: 157 --GGDVSSRKVFVGNVPFEVSAESLLSEFSKYGEIEEGPLGFDKASGKTRGFAFFVYKTE 214
Query: 242 DDAK----RALEAMNGSQL 256
+ AK +++ ++G Q+
Sbjct: 215 EGAKNSVAESMKTVDGHQV 233
>Medtr1723s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protein
| HC | scaffold1723:1189-955 | 20130731
Length = 78
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQD 65
LYVGDL ++++AQL++ F + + S+RVCRD + SL Y YVNF + +D
Sbjct: 27 LYVGDLEGNVNEAQLYELFNQIGQVVSIRVCRDQTMRLSLGYAYVNFSNARD 78
>Medtr4g031680.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr4:10777189-10770195 | 20130731
Length = 574
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/204 (28%), Positives = 91/204 (44%), Gaps = 30/204 (14%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ L TE ++E +FG + + KD E G SKG+ F Y +
Sbjct: 356 LEGPD----RIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYADL 411
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-----QKKAERERILNHQFEEKRKEQILKYKGSNI 296
A A+NG ++G K L V RA Q K E+E IL H +++ Q L ++ + +
Sbjct: 412 AVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHA-QQQIALQKLIFQPALV 470
Query: 297 YVKNI--DDNVSDEEL-------------RDHFSACGSITSAKVMKDEK--GISKGFG-- 337
K + + V+ EEL R S GS+ + + + + +S G G
Sbjct: 471 ATKVVCLTNAVAPEELKEDEDFEEIIDDMRQECSKFGSLVNVVIPRPQPDGDLSGGVGKV 530
Query: 338 FVCFSTPEEANKAVNTFHGFMFHG 361
F+ + E A KA +G F G
Sbjct: 531 FLEYVDIEGATKARTGLNGRKFGG 554
>Medtr4g081520.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr4:31628430-31625444 | 20130731
Length = 144
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
TNL++ L T L+E F FG++V + D +G SKGFGFV Y +DA + +E
Sbjct: 51 TNLFVSGLSKRTTTETLREAFQKFGEVVHARVVTDRVSGYSKGFGFVKYATLEDAAKGIE 110
Query: 250 AMNGSQLGSKILYVARAQKK 269
M+G L +++ A+ +
Sbjct: 111 GMDGKFLEGWVIFAEYARPR 130
>Medtr3g084040.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961723-37963823 | 20130731
Length = 146
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L++G L ++ D L DAF + ++ RV D TGRS +G+VNF S + A A+ +
Sbjct: 38 LFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALSMD 97
Query: 74 NHSMLNGKVIRVLWS 88
LNG+ IRV ++
Sbjct: 98 GQD-LNGRNIRVSYA 111
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 64 QDAMQAIEVKNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKY 123
Q A Q+ + SMLN +R +F+ L+ +VD L + F Y
Sbjct: 13 QGATQSTQAPVSSMLNY-------------LRHMSSSKLFIGGLSYNVDDQSLRDAFTTY 59
Query: 124 GNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
G+++ ++V+ + G+S+G+GFV F SEESA +A+ ++G +N + I V
Sbjct: 60 GDVVEARVITDRETGRSRGFGFVNFTSEESATSALS-MDGQDLNGRNIRV 108
Score = 53.1 bits (126), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 294 SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVN 352
S +++ + NV D+ LRD F+ G + A+V+ D E G S+GFGFV F++ E A A+
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSAL- 94
Query: 353 TFHGFMFHGKPLYVALAQRKEDRQA 377
+ G +G+ + V+ A DRQA
Sbjct: 95 SMDGQDLNGRNIRVSYAN---DRQA 116
>Medtr8g027190.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 249
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
VF NL S LE +F KYG I +V M G+ FV +E E A AI L+
Sbjct: 4 VFAGNLEYDTRQSELERLFSKYGRI--ERVDM-----KSGFAFVYYEDERDAEEAIRALD 56
Query: 162 GSTI-NDKQ---IYVGRFVKKSERILPGPDASYT-NLYMKNLDLDITE-ALLKEKFSSFG 215
+DK+ + R + R P+ T L++ N D T + ++ F +G
Sbjct: 57 NIPFGHDKRRLSVEWARGERGRHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPYG 116
Query: 216 KIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERI 275
+ + I ++ F FV YE +DA +ALE N S++ +++ V A + + +R+
Sbjct: 117 PLHHVRIRRN-------FAFVQYETQEDATKALECTNMSKILDRVVSVEYALRD-DSDRV 168
Query: 276 LNH 278
N+
Sbjct: 169 DNY 171
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
++ NL+ D ++ L+ FS +G+I + M GF FV YE+ DA+ A+ A++
Sbjct: 4 VFAGNLEYDTRQSELERLFSKYGRIERV-------DMKSGFAFVYYEDERDAEEAIRALD 56
Query: 253 GSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNID---DNVSDEE 309
G ++ + ER R H+ K ++ K ++V N D VSD E
Sbjct: 57 NIPFGHDKRRLSVEWARGERGR---HRDGSKPNQKPTK----TLFVINFDPIRTRVSDIE 109
Query: 310 LRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
HF G + + I + F FV + T E+A KA+
Sbjct: 110 R--HFKPYGPLHHVR-------IRRNFAFVQYETQEDATKAL 142
>Medtr8g027190.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr8:9557166-9560056 | 20130731
Length = 249
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYGFVQFESEESANAAIEKLN 161
VF NL S LE +F KYG I +V M G+ FV +E E A AI L+
Sbjct: 4 VFAGNLEYDTRQSELERLFSKYGRI--ERVDM-----KSGFAFVYYEDERDAEEAIRALD 56
Query: 162 GSTI-NDKQ---IYVGRFVKKSERILPGPDASYT-NLYMKNLDLDITE-ALLKEKFSSFG 215
+DK+ + R + R P+ T L++ N D T + ++ F +G
Sbjct: 57 NIPFGHDKRRLSVEWARGERGRHRDGSKPNQKPTKTLFVINFDPIRTRVSDIERHFKPYG 116
Query: 216 KIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERI 275
+ + I ++ F FV YE +DA +ALE N S++ +++ V A + + +R+
Sbjct: 117 PLHHVRIRRN-------FAFVQYETQEDATKALECTNMSKILDRVVSVEYALRD-DSDRV 168
Query: 276 LNH 278
N+
Sbjct: 169 DNY 171
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMN 252
++ NL+ D ++ L+ FS +G+I + M GF FV YE+ DA+ A+ A++
Sbjct: 4 VFAGNLEYDTRQSELERLFSKYGRIERV-------DMKSGFAFVYYEDERDAEEAIRALD 56
Query: 253 GSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILKYKGSNIYVKNID---DNVSDEE 309
G ++ + ER R H+ K ++ K ++V N D VSD E
Sbjct: 57 NIPFGHDKRRLSVEWARGERGR---HRDGSKPNQKPTK----TLFVINFDPIRTRVSDIE 109
Query: 310 LRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAV 351
HF G + + I + F FV + T E+A KA+
Sbjct: 110 R--HFKPYGPLHHVR-------IRRNFAFVQYETQEDATKAL 142
>Medtr4g063560.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr4:23466507-23467712 | 20130731
Length = 112
Score = 54.7 bits (130), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 94 VRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD-DGKSKGYGFVQFESEES 152
VR +F+ L+ + + + L + F+++G I+ KV+ G+SKGYGFV+F SE +
Sbjct: 27 VRHHSSTKLFIAGLSYNTNETVLRDTFEQHGQIIEVKVICNHRTGESKGYGFVRFNSETA 86
Query: 153 ANAAIEKLNGSTINDKQIYVG 173
A A ++L+G ++ ++I VG
Sbjct: 87 AATARKELHGQIVDGRRIRVG 107
>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
chr7:37775862-37750453 | 20130731
Length = 1678
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 148/370 (40%), Gaps = 61/370 (16%)
Query: 32 FAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVKNHSMLNGKVIRVLWS--- 88
F++F +++ V + D T RS +++F P+ A +A+E ++S+ G+++ V+ +
Sbjct: 1228 FSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEESDNSIFQGRLLHVIAAIPI 1287
Query: 89 RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGKSKGYG----- 143
+ + K+ + E ++ + + + ++ +A++ S+ YG
Sbjct: 1288 HSNNEENKNQGSKTLKQRRVEERKAAEAKGDTRAWNSLFMRPDTIAENA-SRKYGVSKSD 1346
Query: 144 FVQFESEESANAAIEKLNGSTINDKQIY--VGRFVKKSERIL----PGPDASYTNLYMKN 197
F+ E+++ A+ K + G V+ E ++ G S L KN
Sbjct: 1347 FLDPEADDLASRHSLAQTQVIFETKNAFKKAGVNVESLEELVNCKVDGVKRSNHVLLAKN 1406
Query: 198 LDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYENPDDAKRALEAMNGSQLG 257
L TE L + F FG + + + +K V + P +AK A + +
Sbjct: 1407 LPYGATENELAKMFGKFGSLDKIILPS-----TKTLALVIFLEPAEAKAAFRGLAYKRYN 1461
Query: 258 SKILY----------------------------VARAQKKAERERILNHQFEEKRKEQIL 289
LY V R + + ERI + + R E
Sbjct: 1462 EAPLYLEWAPSDILTSKSTSINNEVNSGIGGKDVKRVILEKDVERISDADIDPDRIE--- 1518
Query: 290 KYKGSNIYVKNIDDNVSDEELRDHFSAC---GSITSAKV----MKDEKGISKGFGFVCFS 342
+++VKN++ +DE LR+H G I S KV +K+ K +S GFGFV F
Sbjct: 1519 ---ARSLFVKNLNFKTTDEGLREHIREHMKEGRILSVKVKKKHLKNGKNVSMGFGFVEFD 1575
Query: 343 TPEEANKAVN 352
+ E A N
Sbjct: 1576 STETATSVCN 1585
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/390 (21%), Positives = 166/390 (42%), Gaps = 40/390 (10%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+V +L ++ +L + F++F +++ V + D T RS +++F P+ A +A+E
Sbjct: 901 LFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSVPEFAARALEES 960
Query: 74 NHSMLNGKVIRVLWS---RRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSK 130
++S+ G+++ V+ + + + K+ + E ++ + + + ++
Sbjct: 961 DNSIFQGRLLHVIAAIPIHSNNEENKNQGSKTLKQRRVEERKAAEAKGDTRAWNSLFMRP 1020
Query: 131 VVMADDGKSKGYG-----FVQFESEESANAAIEKLNGSTINDKQIY--VGRFVKKSERIL 183
+A++ S+ YG F+ E+++ A+ K + G V+ E ++
Sbjct: 1021 DTIAENA-SRKYGVSKSDFLDPEADDLASRHSLAQTQVIFETKNAFKKAGVNVESLEELV 1079
Query: 184 ----PGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMSKGFGFVNYE 239
G S L KNL TE L + F FG + + + +K V +
Sbjct: 1080 NCKVDGVKRSNHVLLAKNLPYGATENELAKMFGKFGSLDKIILPS-----TKTLALVIFL 1134
Query: 240 NPDDAKRALEAMNGSQLGSKILYVARAQKK--AERERILNHQFE-----EKRKEQILKYK 292
P +AK A + + LY+ A + +N++ + K IL+
Sbjct: 1135 EPAEAKAAFRGLAYKRYNEAPLYLEWAPSDILTSKSTSINNEVNSGIGGKDVKRVILEKD 1194
Query: 293 GSNIYVKNIDDN------------VSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFV 339
I +ID + + +EEL +HFS GS++ ++ D + SKG F+
Sbjct: 1195 VERISDADIDPDRIEVWPIFTILLLYEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFI 1254
Query: 340 CFSTPEEANKAVNTFHGFMFHGKPLYVALA 369
FS PE A +A+ +F G+ L+V A
Sbjct: 1255 HFSVPEFAARALEESDNSIFQGRLLHVIAA 1284
>Medtr2g013130.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 402
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
+++ L TE ++E +FG + S I +D E G SKG+GF Y++P A A+
Sbjct: 180 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 239
Query: 252 NGSQLGSKILYVAR----AQKKAERERILNHQFEEKRKEQI-LKYKGSNI---------- 296
NG ++G K L V R A K E + I + ++I L+ G NI
Sbjct: 240 NGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALEVVGLNIPGVPTNDESP 299
Query: 297 -YVKNIDDNVSDEELRDH 313
V + + V+ E+L D+
Sbjct: 300 TKVLCLTEAVTTEQLTDN 317
>Medtr3g095230.1 | CC1-like splicing factor | LC |
chr3:43513030-43521003 | 20130731
Length = 587
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEK 159
VF + + E F K G + +++M + + SKG G+++F S AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 160 LNGSTINDKQIYVGR--FVKKSERI--------------LPGP-DASYTNLYMKNLDLDI 202
L+G Q+ +G+ VK SE + GP A LY+ NL ++
Sbjct: 275 LSG------QLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNM 328
Query: 203 TEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNG 253
TE+ L+E F FG + + + D E G KGFGF+ + + + AK A +++NG
Sbjct: 329 TESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNG 379
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 13/190 (6%)
Query: 174 RFVKKSERILP--GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGM-S 230
RF +K E + P P+ ++ + L TE + E FS GK+ + + D N S
Sbjct: 196 RFREKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 255
Query: 231 KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILK 290
KG G++ + + A+ A++G L + + V K +E E+ L ++
Sbjct: 256 KGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTTTGAAGVVG 310
Query: 291 YKGS---NIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEE 346
G+ +YV N+ N+++ +LR+ F G++ ++ D E G KGFGF+ F+ E
Sbjct: 311 PYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEH 370
Query: 347 ANKAVNTFHG 356
A KA + +G
Sbjct: 371 A-KAAQSLNG 379
>Medtr3g029580.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr3:9308768-9310458 | 20130731
Length = 134
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVM 133
+HS V R L+ RR +FVK LA S L E F +YGN++ + +V+
Sbjct: 13 SHSKPCTSVFRHLFLRR-------ITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVL 65
Query: 134 ADDGK-SKGYGFVQFESEESANAAIEKLNGSTINDKQIYV 172
K KG+G+V F EE A A +NG ++ + +YV
Sbjct: 66 NKAKKRCKGFGYVTFAEEEEARKAQIGMNGKILHGRVLYV 105
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 288 ILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAK-VMKDEKGISKGFGFVCFSTPEE 346
L+ S I+VK + + ++E+L + FS G++ A V+ K KGFG+V F+ EE
Sbjct: 26 FLRRITSKIFVKGLAFSTTEEKLAEAFSQYGNVVKADIVLNKAKKRCKGFGYVTFAEEEE 85
Query: 347 ANKAVNTFHGFMFHGKPLYVAL 368
A KA +G + HG+ LYV +
Sbjct: 86 ARKAQIGMNGKILHGRVLYVDM 107
>Medtr2g013130.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3477024-3485643 | 20130731
Length = 359
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
+++ L TE ++E +FG + S I +D E G SKG+GF Y++P A A+
Sbjct: 137 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 196
Query: 252 NGSQLGSKILYVAR----AQKKAERERILNHQFEEKRKEQI-LKYKGSNI 296
NG ++G K L V R A K E + I + ++I L+ G NI
Sbjct: 197 NGLKMGDKTLTVRRATVSAHSKPEEDNIFARAQQHIAMQKIALEVVGLNI 246
>Medtr2g013130.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475903-3485643 | 20130731
Length = 522
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
+++ L TE ++E +FG + S I +D E G SKG+GF Y++P A A+
Sbjct: 300 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 359
Query: 252 NGSQLGSKILYVARAQKKA 270
NG ++G K L V RA A
Sbjct: 360 NGLKMGDKTLTVRRATVSA 378
>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr5:9164769-9167836 | 20130731
Length = 303
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSA-KVMKDEKGISKGFGFVCFSTPEEANKAV 351
G +YV + V++ +L +HFS G + S V++ IS+GF FV T E+AN+ +
Sbjct: 130 GDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCI 189
Query: 352 NTFHGFMFHGKPLYVALAQRKEDR 375
+ + G+ + V ++RK R
Sbjct: 190 KYLNQSILEGRYITVERSKRKRPR 213
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVS-LAISKDENGMSKGFGFVNYENPDDAKRALEA 250
LY+ L +TE L+E FS GK+ S + + +S+GF FV + +DA R ++
Sbjct: 132 TLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRCIKY 191
Query: 251 MNGSQLGSKILYVARAQKKAERERILNH 278
+N S L + + V R+++K R H
Sbjct: 192 LNQSILEGRYITVERSKRKRPRTPTPGH 219
>Medtr2g013130.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr2:3475909-3485643 | 20130731
Length = 507
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAM 251
+++ L TE ++E +FG + S I +D E G SKG+GF Y++P A A+
Sbjct: 285 IFVGGLPYYFTEVQMRELLQAFGPLRSFDIVRDKETGNSKGYGFCIYQDPAVTDIACAAL 344
Query: 252 NGSQLGSKILYVARAQKKA 270
NG ++G K L V RA A
Sbjct: 345 NGLKMGDKTLTVRRATVSA 363
>Medtr3g095230.2 | CC1-like splicing factor | LC |
chr3:43513031-43520987 | 20130731
Length = 576
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEK 159
VF + + E F K G + +++M + + SKG G+++F S AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 160 LNGSTINDKQIYVGR--FVKKSERI--------------LPGP-DASYTNLYMKNLDLDI 202
L+G Q+ +G+ VK SE + GP A LY+ NL ++
Sbjct: 275 LSG------QLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNM 328
Query: 203 TEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNG 253
TE+ L+E F FG + + + D E G KGFGF+ + + + AK A +++NG
Sbjct: 329 TESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNG 379
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 13/190 (6%)
Query: 174 RFVKKSERILP--GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGM-S 230
RF +K E + P P+ ++ + L TE + E FS GK+ + + D N S
Sbjct: 196 RFREKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 255
Query: 231 KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILK 290
KG G++ + + A+ A++G L + + V K +E E+ L ++
Sbjct: 256 KGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTTTGAAGVVG 310
Query: 291 YKGS---NIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEE 346
G+ +YV N+ N+++ +LR+ F G++ ++ D E G KGFGF+ F+ E
Sbjct: 311 PYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEH 370
Query: 347 ANKAVNTFHG 356
A KA + +G
Sbjct: 371 A-KAAQSLNG 379
>Medtr3g095230.3 | CC1-like splicing factor | LC |
chr3:43513031-43520279 | 20130731
Length = 576
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 101 NVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMADDGK-SKGYGFVQFESEESANAAIEK 159
VF + + E F K G + +++M + + SKG G+++F S AI
Sbjct: 216 TVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAI-A 274
Query: 160 LNGSTINDKQIYVGR--FVKKSERI--------------LPGP-DASYTNLYMKNLDLDI 202
L+G Q+ +G+ VK SE + GP A LY+ NL ++
Sbjct: 275 LSG------QLLLGQPVMVKPSEAEKNLVQSNTTTGAAGVVGPYGAVDRKLYVGNLHFNM 328
Query: 203 TEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENPDDAKRALEAMNG 253
TE+ L+E F FG + + + D E G KGFGF+ + + + AK A +++NG
Sbjct: 329 TESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEHAK-AAQSLNG 379
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 13/190 (6%)
Query: 174 RFVKKSERILP--GPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGM-S 230
RF +K E + P P+ ++ + L TE + E FS GK+ + + D N S
Sbjct: 196 RFREKKETVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRS 255
Query: 231 KGFGFVNYENPDDAKRALEAMNGSQLGSKILYVARAQKKAERERILNHQFEEKRKEQILK 290
KG G++ + + A+ A++G L + + V K +E E+ L ++
Sbjct: 256 KGVGYIEFYDAMSVPMAI-ALSGQLLLGQPVMV----KPSEAEKNLVQSNTTTGAAGVVG 310
Query: 291 YKGS---NIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEE 346
G+ +YV N+ N+++ +LR+ F G++ ++ D E G KGFGF+ F+ E
Sbjct: 311 PYGAVDRKLYVGNLHFNMTESQLREIFEPFGTVEVVQLPLDLETGHCKGFGFIQFAHIEH 370
Query: 347 ANKAVNTFHG 356
A KA + +G
Sbjct: 371 A-KAAQSLNG 379
>Medtr1g080390.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr1:35718041-35708690 | 20130731
Length = 962
Score = 53.1 bits (126), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 63 PQDAMQAIEVKNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKK 122
P+++ + +E+K ++ N S + R G + +AE V E
Sbjct: 155 PKNSRKPVEIKKAALCNDAADEGGGSEKQKVARTVIFGGLVNSAMAEDVHRQARE----- 209
Query: 123 YGNILSSKVVMADDGKSKGYGFVQ-----------FESEESANAAIEKLNGSTINDKQIY 171
G + S K ++ + + +G +Q + S +SA A++ L+ I ++
Sbjct: 210 IGTVCSIKHPLSRNDLQQ-HGLLQEGCTFNASAVLYTSVKSARASVATLHKKEIGGGTVW 268
Query: 172 VGRFVKKSERILPGPDASYTN--LYMKNLDLDITEALLKEKFSSFGKIVSLAI-SKDENG 228
R L G A L ++NL E +++ FSS G + + I K + G
Sbjct: 269 A--------RQLGGEGAKTQKWKLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTG 320
Query: 229 MSKGFGFVNYENPDDAKRALEAMNGSQLGSKILYV 263
+SKGF FV + DA+ A+ +NGS+ GS+++ V
Sbjct: 321 LSKGFAFVKFTCKQDAENAIRKLNGSKFGSRLIAV 355
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 96 KSCIGNVFVKNLAESVDSSGLEEIFKKYGNILSS-KVVMADDGKSKGYGFVQFESEESAN 154
K C +FV NL S +S LE+ F + G + V + +G+G+VQF E+ AN
Sbjct: 17 KQCPLTLFVSNLPYSFTNSQLEQTFSEVGPVRRCFMVTQKGSTQHRGFGYVQFAVEKDAN 76
Query: 155 AAIEKLNGSTINDKQIYVGRFVKKSER 181
AIE N S + D++I V + + R
Sbjct: 77 QAIELKNSSLVGDRKIVVKHAIPRPPR 103
>Medtr6g477870.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr6:28646362-28643393 | 20130731
Length = 183
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
T LY+ L TE L+ F +FG++V + + D+ +GF F+ Y +++K+A+E
Sbjct: 95 TRLYVSGLSFRTTEESLRNAFKNFGQLVDVNLVMDKVANRPRGFAFLRYATEEESKKAIE 154
Query: 250 AMNGSQLGSKILYVARAQKKAE 271
M+G L ++++V A+ ++E
Sbjct: 155 GMHGKFLDGRVIFVEVAKPRSE 176
>Medtr7g105260.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:42674424-42676547 | 20130731
Length = 140
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 2/85 (2%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+VG L ++ L DAF+ + + +V D + +S YG+V F S +A +AI
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 74 NHSMLNGKVIRVLWSRRDPDVRKSC 98
N LNG+V+ V +++ PD ++S
Sbjct: 94 NEKALNGRVVFVDYAK--PDTKRSM 116
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ L TE L + FS++G++V + D + SKG+GFV + + D+A++A+ M
Sbjct: 34 LFVGGLSFHTTEKTLSDAFSNYGQVVEAKVITDRISEKSKGYGFVTFASQDEAEKAITEM 93
Query: 252 NGSQLGSKILYVARAQKKAER 272
N L ++++V A+ +R
Sbjct: 94 NEKALNGRVVFVDYAKPDTKR 114
>Medtr3g080130.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:36253866-36255120 | 20130731
Length = 135
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L++ L + E LK+ FSSFG + + I D++ G ++GFGFV + N D AK A +AM
Sbjct: 38 LFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDAAKSAKDAM 97
Query: 252 NGSQLGSKILYVARAQKK 269
+G L + L + A +K
Sbjct: 98 DGKALLGRPLRINFALEK 115
>Medtr3g025880.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898677-7894080 | 20130731
Length = 447
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTF 354
++V I N ++ L D FS G + A+++ D E G SKGFGFV ++T EEA+ A+
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 355 HGFMFHGKPLYVALAQRK 372
G +G+ + V A +
Sbjct: 106 DGQDLYGRRVGVNFANER 123
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKL 160
+FV ++ + D L + F KYG +L ++++M + G+SKG+GFV + + E A++AI+ L
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 161 NGSTINDKQIYVGRFVKKSER 181
+G + +++ V F + R
Sbjct: 106 DGQDLYGRRVGV-NFANERPR 125
>Medtr3g025880.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
LC | chr3:7898604-7894080 | 20130731
Length = 447
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVNTF 354
++V I N ++ L D FS G + A+++ D E G SKGFGFV ++T EEA+ A+
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 355 HGFMFHGKPLYVALAQRK 372
G +G+ + V A +
Sbjct: 106 DGQDLYGRRVGVNFANER 123
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVMA-DDGKSKGYGFVQFESEESANAAIEKL 160
+FV ++ + D L + F KYG +L ++++M + G+SKG+GFV + + E A++AI+ L
Sbjct: 46 LFVGGISYNTDEQSLSDAFSKYGQVLDARIIMDRESGRSKGFGFVTYNTVEEASSAIQAL 105
Query: 161 NGSTINDKQIYVGRFVKKSER 181
+G + +++ V F + R
Sbjct: 106 DGQDLYGRRVGV-NFANERPR 125
>Medtr8g107310.1 | eukaryotic translation initiation factor 3
subunit G | HC | chr8:45339610-45341085 | 20130731
Length = 292
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 192 NLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEA 250
++ + NL D E L E F FG + + ++ D+ GMS+GFGFVN+ + +DA+RA+
Sbjct: 212 SVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFVSREDAQRAINK 271
Query: 251 MNGSQLGSKILYVARAQKKA 270
+NG + IL V A +
Sbjct: 272 LNGYGYDNLILRVEWATPRT 291
>Medtr3g084040.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:37961794-37963766 | 20130731
Length = 105
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 14/95 (14%)
Query: 64 QDAMQAIEVKNHSMLNGKVIRVLWSRRDPDVRKSCIGNVFVKNLAESVDSSGLEEIFKKY 123
Q A Q+ + SMLN +R +F+ L+ +VD L + F Y
Sbjct: 13 QGATQSTQAPVSSMLNY-------------LRHMSSSKLFIGGLSYNVDDQSLRDAFTTY 59
Query: 124 GNILSSKVVM-ADDGKSKGYGFVQFESEESANAAI 157
G+++ ++V+ + G+S+G+GFV F SEESA +A+
Sbjct: 60 GDVVEARVITDRETGRSRGFGFVNFTSEESATSAL 94
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 294 SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISKGFGFVCFSTPEEANKAVN 352
S +++ + NV D+ LRD F+ G + A+V+ D E G S+GFGFV F++ E A A++
Sbjct: 36 SKLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS 95
>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
chr1:43879642-43873268 | 20130731
Length = 572
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 102 VFVKNLAESVDSSGLEEIFKKYGNILSSKVVM-ADDGKSKGYGFVQFESEESANAAIEKL 160
VFV N+ L+EI ++ G ++S ++V + GK KGYGF ++ EE+A +A L
Sbjct: 31 VFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEETALSARRNL 90
Query: 161 NGSTINDKQIYV 172
G IN +Q+ V
Sbjct: 91 QGYEINGRQLRV 102
>Medtr7g117495.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649613-48651189 | 20130731
Length = 256
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 97 SCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESAN 154
+ + VFV LA L E F+KYG+IL + V+++D G+SKGYGFV F+ +SA
Sbjct: 15 TTLTKVFVGGLAWETPKDTLREHFEKYGDILEA-VIISDKVTGRSKGYGFVTFKDADSAK 73
Query: 155 AAIEK----LNGSTIN 166
A E+ +NG N
Sbjct: 74 KACEEPTVIINGRRAN 89
>Medtr7g117495.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:48649576-48651271 | 20130731
Length = 253
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 7/76 (9%)
Query: 97 SCIGNVFVKNLAESVDSSGLEEIFKKYGNILSSKVVMAD--DGKSKGYGFVQFESEESAN 154
+ + VFV LA L E F+KYG+IL + V+++D G+SKGYGFV F+ +SA
Sbjct: 15 TTLTKVFVGGLAWETPKDTLREHFEKYGDILEA-VIISDKVTGRSKGYGFVTFKDADSAK 73
Query: 155 AAIEK----LNGSTIN 166
A E+ +NG N
Sbjct: 74 KACEEPTVIINGRRAN 89
>Medtr1g080150.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr1:35593441-35588449 | 20130731
Length = 240
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 14 LYVGDLHPDISDAQLHDAFAEFKNLASVRVCRDSSTGRSLCYGYVNFLSPQDAMQAIEVK 73
L+ GDL +++D L AF F + RV RD TG++ YG+++F +P D A++
Sbjct: 134 LFCGDLGNEVNDDVLSKAFTRFPSFNMARVVRDKRTGKTKGYGFISFANPADLAAALKEM 193
Query: 74 NHSMLNGKVIRVL---WSRR 90
N + + I++ W R
Sbjct: 194 NGKYVGNRPIKLRKSKWRER 213
>Medtr3g014000.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr3:3865418-3863915 | 20130731
Length = 138
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 276 LNHQFEEKRKEQILKYKGSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKD-EKGISK 334
+NH + +N+++ I N LR HFS G + AK+++D E G +
Sbjct: 16 VNHDLSMSVFQATRSMSSANLFLGGISYNT----LRKHFSLYGKVLDAKIIRDRETGRPR 71
Query: 335 GFGFVCFSTPEEANKAVNT 353
GFGFV F+T EEA+ A+ T
Sbjct: 72 GFGFVTFATTEEASAALQT 90
>Medtr3g005670.7 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ + TE ++E +FG + + KD E G SKG+ F Y++
Sbjct: 406 LDGPD----RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 461
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNH 278
A A+NG ++G K L V RA Q K E+E IL H
Sbjct: 462 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMH 505
>Medtr3g005670.6 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ + TE ++E +FG + + KD E G SKG+ F Y++
Sbjct: 404 LDGPD----RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 459
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNH 278
A A+NG ++G K L V RA Q K E+E IL H
Sbjct: 460 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMH 503
>Medtr4g036415.1 | splicing factor-like protein | HC |
chr4:13104578-13109685 | 20130731
Length = 767
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 294 SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAVN 352
+N+Y+ + + D+ L F G I AKV+KD G+SKG+GFV ++ AN A+
Sbjct: 451 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIV 510
Query: 353 TFHGFMFHGKPLYVALAQRKEDRQAQLQLQYAQKIAGLAGPSTAIIPGGYPPFYYTATGV 412
+G+ G+ + V +A K + A + S I G YP YT G
Sbjct: 511 AMNGYRLEGRTIAVRVAG-KPPQPVVPPGPPASAVPTYPVQSQPI--GAYPSQQYTGGGP 567
Query: 413 VPHVP 417
+ + P
Sbjct: 568 IGNAP 572
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALE 249
TNLY+ L + + L + F FG+IV + KD G+SKG+GFV Y + A A+
Sbjct: 451 TNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRITGLSKGYGFVKYADITMANNAIV 510
Query: 250 AMNGSQLGSKILYVARAQK 268
AMNG +L + + V A K
Sbjct: 511 AMNGYRLEGRTIAVRVAGK 529
>Medtr4g063557.3 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVN 352
G+ +Y+ N+D VS++++++ FS G + V D G SKG V FS ++A AV
Sbjct: 93 GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152
Query: 353 TFHGFMFHGKPLYVAL 368
++ GKP+ + +
Sbjct: 153 RYNNVQLDGKPMKIEI 168
>Medtr4g063557.2 | RNA and export factor-binding protein | HC |
chr4:23458836-23463583 | 20130731
Length = 263
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVN 352
G+ +Y+ N+D VS++++++ FS G + V D G SKG V FS ++A AV
Sbjct: 93 GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152
Query: 353 TFHGFMFHGKPLYVAL 368
++ GKP+ + +
Sbjct: 153 RYNNVQLDGKPMKIEI 168
>Medtr4g063557.1 | RNA and export factor-binding protein | HC |
chr4:23458840-23463583 | 20130731
Length = 263
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%)
Query: 293 GSNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVCFSTPEEANKAVN 352
G+ +Y+ N+D VS++++++ FS G + V D G SKG V FS ++A AV
Sbjct: 93 GTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSKGTAEVVFSRRQDAVAAVK 152
Query: 353 TFHGFMFHGKPLYVAL 368
++ GKP+ + +
Sbjct: 153 RYNNVQLDGKPMKIEI 168
>Medtr2g096560.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr2:41240036-41242642 | 20130731
Length = 89
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 191 TNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKDENGMS-KGFGFVNYENPDDAKRALE 249
T L++ L T+ L+ FS FG + + D+N KGFGFV+Y++ +A++A +
Sbjct: 7 TKLFVSRLSFYTTQQQLESLFSPFGVLTEATLITDQNTQRPKGFGFVSYKSEIEAEKARK 66
Query: 250 AMNGSQLGSKILYVARAQKK 269
A+NG + ++++V A+ K
Sbjct: 67 ALNGRIVDGRLIFVEHAKPK 86
>Medtr3g005670.3 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313745-308216 | 20130731
Length = 564
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 19/167 (11%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ + TE ++E +FG + + KD E G SKG+ F Y++
Sbjct: 406 LDGPD----RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 461
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNH-QFEEKRKEQILKYKG 293
A A+NG ++G K L V RA Q K E+E IL H Q + ++ +L+
Sbjct: 462 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMHAQQQIALQKLMLQPAL 521
Query: 294 SNIYVKNIDDNVSDEELRDHFSACGSITSAKVMKDEKGISKGFGFVC 340
V + VS +EL+D +++ D + FG +C
Sbjct: 522 VATKVLCLTHAVSPDELKDDEDY------EEILDDMRQECSKFGNIC 562
>Medtr0022s0360.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | scaffold0022:121507-124438 | 20130731
Length = 157
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAI----SKDENGMSKGFGFVNYENPD 242
D L + NLDL ITEA L + FS +GKIVS+ + + G +GF F++Y +
Sbjct: 9 DKCENRLCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKE 68
Query: 243 DAKRALEAMNGSQLGSKILYVARAQKKAERER 274
+A A E M+G S+ L V A ++ E+
Sbjct: 69 EAILAREKMHGRLACSRPLVVRLAGERYALEK 100
>Medtr0022s0360.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | scaffold0022:121507-124438 | 20130731
Length = 157
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 187 DASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAI----SKDENGMSKGFGFVNYENPD 242
D L + NLDL ITEA L + FS +GKIVS+ + + G +GF F++Y +
Sbjct: 9 DKCENRLCVGNLDLRITEAALLKMFSPYGKIVSVDLLWHTRGPKRGEPRGFAFIHYSTKE 68
Query: 243 DAKRALEAMNGSQLGSKILYVARAQKKAERER 274
+A A E M+G S+ L V A ++ E+
Sbjct: 69 EAILAREKMHGRLACSRPLVVRLAGERYALEK 100
>Medtr3g005670.5 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 585
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ + TE ++E +FG + + KD E G SKG+ F Y++
Sbjct: 406 LDGPD----RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 461
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNH 278
A A+NG ++G K L V RA Q K E+E IL H
Sbjct: 462 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMH 505
>Medtr3g005670.1 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 626
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ + TE ++E +FG + + KD E G SKG+ F Y++
Sbjct: 406 LDGPD----RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 461
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNH 278
A A+NG ++G K L V RA Q K E+E IL H
Sbjct: 462 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMH 505
>Medtr3g005670.2 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 624
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ + TE ++E +FG + + KD E G SKG+ F Y++
Sbjct: 404 LDGPD----RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 459
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNH 278
A A+NG ++G K L V RA Q K E+E IL H
Sbjct: 460 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMH 503
>Medtr3g005670.4 | U2 snRNP auxilliary factor, large subunit,
splicing factor | HC | chr3:313978-307107 | 20130731
Length = 583
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 12/104 (11%)
Query: 183 LPGPDASYTNLYMKNLDLDITEALLKEKFSSFGKIVSLAISKD-ENGMSKGFGFVNYENP 241
L GPD +++ + TE ++E +FG + + KD E G SKG+ F Y++
Sbjct: 404 LDGPD----RIFVGGVPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDL 459
Query: 242 DDAKRALEAMNGSQLGSKILYVARA-------QKKAERERILNH 278
A A+NG ++G K L V RA Q K E+E IL H
Sbjct: 460 AVTDIACAALNGIKMGDKTLTVRRANQNTNPMQPKPEQESILMH 503
>Medtr2g069490.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
HC | chr2:28910323-28904195 | 20130731
Length = 415
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDEN-GMSKGFGFVNYENPDDAKRALEAM 251
L+++ L ++ E LKE FS+FG++VS+ + D + KG+G+V+++ +A++AL M
Sbjct: 102 LHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYM 161
Query: 252 NGSQLGSKIL 261
+G+Q+ ++
Sbjct: 162 DGAQIDGNVV 171
>Medtr7g099940.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
HC | chr7:40168782-40171275 | 20130731
Length = 141
Score = 49.7 bits (117), Expect = 8e-06, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 296 IYVKNIDDNVSDEELRDHFSACGSITSAKVMKDE-KGISKGFGFVCFSTPEEANKAVNTF 354
+++ + +DE+L + FS G + AKV+ D G SKGF FV +ST EEA KA
Sbjct: 37 LFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGM 96
Query: 355 HGFMFHGKPLYVALAQRKEDR 375
+ G ++V A+ +E R
Sbjct: 97 NAKFLDGWVIFVDPAKPREPR 117
Score = 49.7 bits (117), Expect = 9e-06, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 193 LYMKNLDLDITEALLKEKFSSFGKIVSLAISKDE-NGMSKGFGFVNYENPDDAKRALEAM 251
L++ L T+ L E FS FG+++ + D +G SKGF FV+Y ++A++A E M
Sbjct: 37 LFISGLSRLTTDEKLTEAFSPFGQLLEAKVITDRGSGRSKGFAFVSYSTIEEAEKAREGM 96
Query: 252 NGSQLGSKILYVARAQKKAER 272
N L +++V A+ + R
Sbjct: 97 NAKFLDGWVIFVDPAKPREPR 117