Miyakogusa Predicted Gene

Lj1g3v4691630.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4691630.1 tr|A9SDQ3|A9SDQ3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_77990
,38.24,1e-17,Mod_r,Modifier of rudimentary, Modr; seg,NULL; UNKNOWN
PROTEIN,NULL; WILLIAMS-BEUREN SYNDROME CRITIC,CUFF.32868.1
         (178 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g102780.1 | modifier of rudimentary (Mod(R)) protein | HC ...   178   3e-45

>Medtr7g102780.1 | modifier of rudimentary (Mod(R)) protein | HC |
           chr7:41632951-41637227 | 20130731
          Length = 220

 Score =  178 bits (451), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 92/120 (76%), Positives = 98/120 (81%)

Query: 59  AEAAGIISALKDKSVDELRKLLSDKDAYQQFLNSLDQVKIQNNLKDELCKENLQLAEENL 118
           AEAAG I++LKDKSVDELRKLLSDKDAYQQFLNSL+QVKIQ NLKDEL KEN QLAEENL
Sbjct: 56  AEAAGTIASLKDKSVDELRKLLSDKDAYQQFLNSLEQVKIQTNLKDELAKENRQLAEENL 115

Query: 119 QKEPRIMELRNQCRIIRTTELATAXXXXXXXXXXXXXXXXXXSPASLLQRIQESINKTDE 178
           QKEPR+MELRNQCRIIRTTELATA                  SPASLLQRIQES+N+TDE
Sbjct: 116 QKEPRMMELRNQCRIIRTTELATANEKLNELEKQKEEMLKMNSPASLLQRIQESVNQTDE 175