Miyakogusa Predicted Gene

Lj1g3v4691480.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4691480.1 tr|Q7NIW8|Q7NIW8_GLOVI Endopeptidase Clp
ATP-binding chain OS=Gloeobacter violaceus (strain PCC
7421,44.59,0.0000000005,Double Clp-N motif,NULL; ATP-DEPENDENT CLP
PROTEASE,NULL; seg,NULL; no description,Double Clp-N moti,CUFF.32897.1
         (276 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g100040.1 | ATP-dependent Clp protease ATP-binding subunit...   366   e-101
Medtr3g102830.1 | ATP-dependent Clp protease ATP-binding subunit...   362   e-100
Medtr3g498725.2 | ATP-dependent Clp protease ATP-binding subunit...   362   e-100
Medtr3g498725.1 | ATP-dependent Clp protease ATP-binding subunit...   362   e-100
Medtr3g498725.3 | ATP-dependent Clp protease ATP-binding subunit...   362   e-100
Medtr1g076440.1 | ATP-dependent Clp protease ATP-binding subunit...   137   1e-32
Medtr3g461000.1 | ATP-dependent Clp protease ATP-binding subunit...   116   2e-26
Medtr5g011550.2 | ATP-dependent Clp protease | HC | chr5:3358350...    65   1e-10
Medtr5g011550.1 | ATP-dependent Clp protease | HC | chr5:3358350...    64   2e-10
Medtr3g098310.2 | ATP-dependent Clp protease | HC | chr3:4487824...    64   2e-10
Medtr3g098310.1 | ATP-dependent Clp protease | HC | chr3:4487820...    64   2e-10

>Medtr8g100040.1 | ATP-dependent Clp protease ATP-binding subunit |
           HC | chr8:40241178-40246683 | 20130731
          Length = 926

 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/254 (74%), Positives = 211/254 (83%), Gaps = 4/254 (1%)

Query: 26  MSRVLAQSINIPGLVAGRTHGRNNR-STKSKRPVKMMYTTLQAPALRLSGFSGLRSFNNL 84
           MSR LAQSIN+PGLVAGR H  NN+ + +S+R V+MM+TT  A + RLS +SGLR+ N+L
Sbjct: 1   MSRALAQSINVPGLVAGRRHVNNNKGAARSRRSVRMMFTTRTA-SPRLSSYSGLRTLNSL 59

Query: 85  DTMLRPGLDFHSKVFAT--TTMSRKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGH 142
           D+MLRPG DFHSKV     T  ++  R SRCV KAMFERFTEKAIKVIMLAQEEARR+GH
Sbjct: 60  DSMLRPGQDFHSKVLTQIGTNRAKGGRGSRCVTKAMFERFTEKAIKVIMLAQEEARRLGH 119

Query: 143 NFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAK 202
           NFVGTEQ+LLGLIGEGTGIAAKVLK+MGI+LKDARVEVEKIIGRGSGFV VEIPFTPRAK
Sbjct: 120 NFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAK 179

Query: 203 RVLELSLEEARLLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRSQVIRMVGEG 262
           RVLELSLEEAR LGHNYIGS             VAARVLENLGADP+NIR+QVIRMVGEG
Sbjct: 180 RVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGEG 239

Query: 263 ADTIAATVGPGRSS 276
           AD++ ATVG G S+
Sbjct: 240 ADSVGATVGSGSSN 253


>Medtr3g102830.1 | ATP-dependent Clp protease ATP-binding subunit |
           HC | chr3:47377876-47383774 | 20130731
          Length = 927

 Score =  362 bits (930), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/255 (73%), Positives = 204/255 (80%), Gaps = 5/255 (1%)

Query: 26  MSRVLAQSINIPGLVAGRTHGRNNRSTKSKRP--VKMMYTTLQAPALRLSGFSGLRSFNN 83
           MSRVLAQSIN+PGLVAGR H  NN  +   RP  V+MMY T Q   +RLSGFSGLR  N+
Sbjct: 1   MSRVLAQSINVPGLVAGRRHVNNNNGSVRSRPRSVRMMYAT-QTATMRLSGFSGLRPLNS 59

Query: 84  LDTMLRPGLDFHSKVFAT--TTMSRKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMG 141
           LD+M RP  DFHSKV     T  +R  R SRCV +AMFERFTEKAIKVIMLAQEEARR+G
Sbjct: 60  LDSMFRPRQDFHSKVLTQIGTNRARGGRGSRCVTRAMFERFTEKAIKVIMLAQEEARRLG 119

Query: 142 HNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRA 201
           HNFVGTEQ+LLGLIGEGTGI AKVLK+MGI+LKD+RVEVEKIIGRGSGFV VEIPFTPRA
Sbjct: 120 HNFVGTEQILLGLIGEGTGIGAKVLKSMGINLKDSRVEVEKIIGRGSGFVAVEIPFTPRA 179

Query: 202 KRVLELSLEEARLLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRSQVIRMVGE 261
           KRVLELSLEEAR LGHNYIGS             VAARVLENLGADP+NIR+QVIRMVGE
Sbjct: 180 KRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGE 239

Query: 262 GADTIAATVGPGRSS 276
           GAD + ATVG G S+
Sbjct: 240 GADNVGATVGSGSSN 254


>Medtr3g498725.2 | ATP-dependent Clp protease ATP-binding subunit |
           HC | chr3:45109477-45116986 | 20130731
          Length = 922

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/251 (73%), Positives = 207/251 (82%), Gaps = 2/251 (0%)

Query: 26  MSRVLAQSINIPGLVAGRTHGRNNRSTKSKRPVKMMYTTLQAPALRLSGFSGLRSFNNLD 85
           M+RVLAQSIN+PGLV G    ++  S KSKR VKMM  + +   LR+ GFSGLR+ N+LD
Sbjct: 1   MARVLAQSINVPGLVVGHKQSQHKGSGKSKRSVKMMCAS-RTIGLRMPGFSGLRTINHLD 59

Query: 86  TMLRPGLDFHSKVFATTTMSRKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFV 145
           TMLRPGLDFH+KV +    SR+ARA R +P+AMFERFTEKAIKVIMLAQEEARR+GHNFV
Sbjct: 60  TMLRPGLDFHAKV-SMAISSRRARAKRIIPRAMFERFTEKAIKVIMLAQEEARRLGHNFV 118

Query: 146 GTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAKRVL 205
           GTEQ+LLGLIGEGTGIAAKVLK+MGI+LKDARVEVEKIIGRGSGFV VEIPFTPRAKRVL
Sbjct: 119 GTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVL 178

Query: 206 ELSLEEARLLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRSQVIRMVGEGADT 265
           ELSLEEAR LGHNYIGS             VAARVLENLGADP+NIR+QVIRMVGE AD 
Sbjct: 179 ELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADN 238

Query: 266 IAATVGPGRSS 276
           + ATVG G S+
Sbjct: 239 VTATVGSGSSN 249


>Medtr3g498725.1 | ATP-dependent Clp protease ATP-binding subunit |
           HC | chr3:45109729-45116929 | 20130731
          Length = 922

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/251 (73%), Positives = 207/251 (82%), Gaps = 2/251 (0%)

Query: 26  MSRVLAQSINIPGLVAGRTHGRNNRSTKSKRPVKMMYTTLQAPALRLSGFSGLRSFNNLD 85
           M+RVLAQSIN+PGLV G    ++  S KSKR VKMM  + +   LR+ GFSGLR+ N+LD
Sbjct: 1   MARVLAQSINVPGLVVGHKQSQHKGSGKSKRSVKMMCAS-RTIGLRMPGFSGLRTINHLD 59

Query: 86  TMLRPGLDFHSKVFATTTMSRKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFV 145
           TMLRPGLDFH+KV +    SR+ARA R +P+AMFERFTEKAIKVIMLAQEEARR+GHNFV
Sbjct: 60  TMLRPGLDFHAKV-SMAISSRRARAKRIIPRAMFERFTEKAIKVIMLAQEEARRLGHNFV 118

Query: 146 GTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAKRVL 205
           GTEQ+LLGLIGEGTGIAAKVLK+MGI+LKDARVEVEKIIGRGSGFV VEIPFTPRAKRVL
Sbjct: 119 GTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVL 178

Query: 206 ELSLEEARLLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRSQVIRMVGEGADT 265
           ELSLEEAR LGHNYIGS             VAARVLENLGADP+NIR+QVIRMVGE AD 
Sbjct: 179 ELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADN 238

Query: 266 IAATVGPGRSS 276
           + ATVG G S+
Sbjct: 239 VTATVGSGSSN 249


>Medtr3g498725.3 | ATP-dependent Clp protease ATP-binding subunit |
           HC | chr3:45109881-45116929 | 20130731
          Length = 922

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/251 (73%), Positives = 207/251 (82%), Gaps = 2/251 (0%)

Query: 26  MSRVLAQSINIPGLVAGRTHGRNNRSTKSKRPVKMMYTTLQAPALRLSGFSGLRSFNNLD 85
           M+RVLAQSIN+PGLV G    ++  S KSKR VKMM  + +   LR+ GFSGLR+ N+LD
Sbjct: 1   MARVLAQSINVPGLVVGHKQSQHKGSGKSKRSVKMMCAS-RTIGLRMPGFSGLRTINHLD 59

Query: 86  TMLRPGLDFHSKVFATTTMSRKARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFV 145
           TMLRPGLDFH+KV +    SR+ARA R +P+AMFERFTEKAIKVIMLAQEEARR+GHNFV
Sbjct: 60  TMLRPGLDFHAKV-SMAISSRRARAKRIIPRAMFERFTEKAIKVIMLAQEEARRLGHNFV 118

Query: 146 GTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAKRVL 205
           GTEQ+LLGLIGEGTGIAAKVLK+MGI+LKDARVEVEKIIGRGSGFV VEIPFTPRAKRVL
Sbjct: 119 GTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVL 178

Query: 206 ELSLEEARLLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRSQVIRMVGEGADT 265
           ELSLEEAR LGHNYIGS             VAARVLENLGADP+NIR+QVIRMVGE AD 
Sbjct: 179 ELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADN 238

Query: 266 IAATVGPGRSS 276
           + ATVG G S+
Sbjct: 239 VTATVGSGSSN 249


>Medtr1g076440.1 | ATP-dependent Clp protease ATP-binding subunit |
           LC | chr1:34057155-34054580 | 20130731
          Length = 310

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 79/105 (75%)

Query: 151 LLGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVEIPFTPRAKRVLELSLE 210
           L GLIGEGT I+ KVLK MGI+LKDARVEVEKIIGRG GFV VEIPFT   KRVL+LSLE
Sbjct: 7   LFGLIGEGTSISVKVLKCMGINLKDARVEVEKIIGRGGGFVAVEIPFTSCVKRVLKLSLE 66

Query: 211 EARLLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRSQV 255
           E+R L HNYI S             VAA VLENLGADP+NIR+Q+
Sbjct: 67  ESRQLDHNYIRSEHLLLGFLREGEGVAAPVLENLGADPTNIRTQL 111



 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 40/62 (64%)

Query: 122 FTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDARVEVE 181
           FT    +V+ L+ EE+R++ HN++ +E +LLG + EG G+AA VL+ +G    + R ++ 
Sbjct: 53  FTSCVKRVLKLSLEESRQLDHNYIRSEHLLLGFLREGEGVAAPVLENLGADPTNIRTQLN 112

Query: 182 KI 183
            I
Sbjct: 113 II 114


>Medtr3g461000.1 | ATP-dependent Clp protease ATP-binding subunit,
           putative | HC | chr3:24065055-24068423 | 20130731
          Length = 810

 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/152 (40%), Positives = 92/152 (60%), Gaps = 3/152 (1%)

Query: 118 MFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAKVLKAMGISLKDAR 177
           M E  TE A KVIM AQ+EAR +GH ++ TE +LLG++G+  G+AAK+LK+ GI    +R
Sbjct: 1   MLENLTECAKKVIMAAQKEARFVGHKYISTEHILLGILGDSNGLAAKILKSYGIDFNVSR 60

Query: 178 VEVEKIIGRG---SGFVDVEIPFTPRAKRVLELSLEEARLLGHNYIGSXXXXXXXXXXXX 234
            +V K++GRG   SGF   +I FT  AK VL+ SL+ A+ LG++ + +            
Sbjct: 61  EQVMKLVGRGGGCSGFSCKDIRFTFDAKNVLDFSLKHAKSLGYDNVDTMHLLLGLLQGSN 120

Query: 235 XVAARVLENLGADPSNIRSQVIRMVGEGADTI 266
               ++++N GAD + IR QVIR + E    +
Sbjct: 121 GTVTQLIQNQGADVNKIREQVIRQIEENVHQV 152


>Medtr5g011550.2 | ATP-dependent Clp protease | HC |
           chr5:3358350-3355324 | 20130731
          Length = 205

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 94  FHSKVFATTTMSR--KARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVL 151
           FH +  A T       +   R  P     +++ KAIK   ++  EAR++     GTE ++
Sbjct: 56  FHRRPLAATVSFSLPTSNPERVSPGQEIPKWSSKAIKSFAMSAIEARKLKFTTTGTEALI 115

Query: 152 LGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVE--IPFTPRAKRVLELSL 209
           +G++ EGT +A+K L+A GI+L   R E+ KI+G    F +     P T  A+R L+ ++
Sbjct: 116 MGILIEGTNLASKFLRANGITLFKVRDEIVKILGEVDPFTETPERPPMTDDAQRALDWAV 175

Query: 210 E 210
           +
Sbjct: 176 D 176


>Medtr5g011550.1 | ATP-dependent Clp protease | HC |
           chr5:3358350-3355170 | 20130731
          Length = 233

 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 4/121 (3%)

Query: 94  FHSKVFATTTMSR--KARASRCVPKAMFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVL 151
           FH +  A T       +   R  P     +++ KAIK   ++  EAR++     GTE ++
Sbjct: 56  FHRRPLAATVSFSLPTSNPERVSPGQEIPKWSSKAIKSFAMSAIEARKLKFTTTGTEALI 115

Query: 152 LGLIGEGTGIAAKVLKAMGISLKDARVEVEKIIGRGSGFVDVE--IPFTPRAKRVLELSL 209
           +G++ EGT +A+K L+A GI+L   R E+ KI+G    F +     P T  A+R L+ ++
Sbjct: 116 MGILIEGTNLASKFLRANGITLFKVRDEIVKILGEVDPFTETPERPPMTDDAQRALDWAV 175

Query: 210 E 210
           +
Sbjct: 176 D 176


>Medtr3g098310.2 | ATP-dependent Clp protease | HC |
           chr3:44878249-44871095 | 20130731
          Length = 792

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 118 MFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAK---VLKAMGISLK 174
           +FERFTE++IK I+ A++EA+    +F+  + ++LGLI E           L +  ++L+
Sbjct: 100 IFERFTERSIKSIVYAEKEAKFFKSDFLYAQHIMLGLIAEAEESNRSQNGFLDSGVVTLE 159

Query: 175 DARVEVEKIIGRGSGFVDVE---------IPFTPRAKRVLELSLEEARLLGHNYIGSXXX 225
            AR  V   +   + +VD           +PF+   KRV E ++E +R L HN++     
Sbjct: 160 KARDAVPH-LNDSTNYVDDNGVYVYQDRPVPFSFGTKRVFEAAVEYSRSLNHNFVDPEHI 218

Query: 226 XXXXXXXXXXVAARVLENLGADPSNI 251
                      + R+L  LG++P  +
Sbjct: 219 FVALMKVDDGSSVRILYRLGSNPDQL 244


>Medtr3g098310.1 | ATP-dependent Clp protease | HC |
           chr3:44878208-44871095 | 20130731
          Length = 963

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 72/146 (49%), Gaps = 13/146 (8%)

Query: 118 MFERFTEKAIKVIMLAQEEARRMGHNFVGTEQVLLGLIGEGTGIAAK---VLKAMGISLK 174
           +FERFTE++IK I+ A++EA+    +F+  + ++LGLI E           L +  ++L+
Sbjct: 100 IFERFTERSIKSIVYAEKEAKFFKSDFLYAQHIMLGLIAEAEESNRSQNGFLDSGVVTLE 159

Query: 175 DARVEVEKIIGRGSGFVDVE---------IPFTPRAKRVLELSLEEARLLGHNYIGSXXX 225
            AR  V   +   + +VD           +PF+   KRV E ++E +R L HN++     
Sbjct: 160 KARDAVPH-LNDSTNYVDDNGVYVYQDRPVPFSFGTKRVFEAAVEYSRSLNHNFVDPEHI 218

Query: 226 XXXXXXXXXXVAARVLENLGADPSNI 251
                      + R+L  LG++P  +
Sbjct: 219 FVALMKVDDGSSVRILYRLGSNPDQL 244