Miyakogusa Predicted Gene

Lj1g3v4690370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4690370.1 Non Characterized Hit- tr|D8R0G4|D8R0G4_SELML
Putative uncharacterized protein OS=Selaginella moelle,33.93,1e-18,PH
DOMAIN CONTAINING PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED
PROTEIN (VPS13),Vacuolar prot,gene.g37021.t1.1
         (214 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g013780.1 | vacuolar protein sorting protein | HC | chr5:4...   281   3e-76
Medtr4g123110.1 | calcium-dependent lipid-binding-like protein |...    84   1e-16

>Medtr5g013780.1 | vacuolar protein sorting protein | HC |
           chr5:4444545-4498541 | 20130731
          Length = 4324

 Score =  281 bits (719), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 136/174 (78%), Positives = 148/174 (85%)

Query: 6   TGKSPKXXXXXXXXXXXXWNRLNKIIGYKEGDDGQSPVNSKADVMHTFLVVHMNHNASKL 65
           T  SP             WN+LNK+IGYKEGDDG+S VNSKADV+HTFLVVHMNHNASKL
Sbjct: 440 TSNSPIEETEEFKFSEEDWNQLNKMIGYKEGDDGKSAVNSKADVVHTFLVVHMNHNASKL 499

Query: 66  IGEAQDLVAELSCEDLSCSVKLYPETKVFDIKLGSYQLSSPKGLLAESAASFDSLVGVFK 125
           IGEA   VAELSCE+LSCS+KLYPETK+FDIKLGSYQL SPKGLLAESA S DSLVGVF 
Sbjct: 500 IGEANKPVAELSCENLSCSIKLYPETKIFDIKLGSYQLLSPKGLLAESATSNDSLVGVFN 559

Query: 126 YKPFDDKVDWSMVAKASPCYMTYMKDSINQIVKFFETNATVSQTIALETAAAVQ 179
           YKPFDDKVDWS+VAKASPCYMTYMK+SI+QIVKFFE++  VSQTI LETAAAVQ
Sbjct: 560 YKPFDDKVDWSLVAKASPCYMTYMKESIDQIVKFFESDTAVSQTIVLETAAAVQ 613


>Medtr4g123110.1 | calcium-dependent lipid-binding-like protein | HC
           | chr4:50875754-50826418 | 20130731
          Length = 4257

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 10/163 (6%)

Query: 24  WNRLNKIIGYKEGDDGQSPVNSKADVMHTFLV-VHMNHNASKLIGEAQDLVAELSC---E 79
           W  +NK++ ++  ++        A  M  FLV V +   A+++I   Q    EL C   E
Sbjct: 471 WQAINKLLSFQPEEELMLRSAKDAQNMVQFLVTVSIGQAAARIISVNQ---VELVCGRFE 527

Query: 80  DLSCSVKLYPETKVFDIKLGSYQLSSPKGLLAESAAS---FDSLVGVFKYKPFDDKVDWS 136
            L  S K    +   D+ L  Y LS+P+G L +S  S    ++LV  F + P  + +DW 
Sbjct: 528 QLDVSTKFRHHSVYCDVLLKFYGLSAPEGSLTQSVYSEQKVNALVASFVHLPIGENIDWR 587

Query: 137 MVAKASPCYMTYMKDSINQIVKFFETNATVSQTIALETAAAVQ 179
           + A  +PC++T + DSI+++ +F + +  VS T+ALETA A+Q
Sbjct: 588 LSATIAPCHVTVLMDSIDRVFEFLKRSKAVSPTVALETATALQ 630