Miyakogusa Predicted Gene

Lj1g3v4614460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4614460.1 Non Characterized Hit- tr|A5C6I8|A5C6I8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,47.86,2e-18,zf-RING_2,Zinc finger, RING-type; no description,Zinc
finger, RING/FYVE/PHD-type; RFWD3 PROTEIN-RELA,CUFF.32857.1
         (414 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g102280.1 | zinc finger, C3HC4 type (RING finger) protein ...   349   3e-96
Medtr8g028580.1 | RING zinc finger protein | HC | chr8:10935030-...    55   1e-07

>Medtr7g102280.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr7:41278137-41273041 | 20130731
          Length = 596

 Score =  349 bits (895), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 184/336 (54%), Positives = 221/336 (65%), Gaps = 60/336 (17%)

Query: 66  YIPVAPSHRVSPNVHQNPTSDSVEVILIPDSEQQNYSEEDGNKRRRIEEGEAPTSSLG-- 123
           Y+P  PS RVS          S EV +IP  E+        NKRRRIE GEA + S+   
Sbjct: 68  YVPDVPSSRVS---------RSDEVSVIPGDER--------NKRRRIEGGEASSLSIPIE 110

Query: 124 ----SQGNELTGTDIDGLVCPICMDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSG 179
               SQ NE   TDIDGL+CPICMDAWTN G+HHICCLPCGH+YGMSC+ KWLQ +K+SG
Sbjct: 111 SVDCSQENECNRTDIDGLICPICMDAWTNEGDHHICCLPCGHIYGMSCVRKWLQQKKNSG 170

Query: 180 KCPQCKSKCSLKDVRKLYASRLVAVDGNLHKRIRSLEDKCSGLESKDGQWNKKEAEWKKR 239
           KCPQC  +CS+KDVRKLYASR+V VD    K IRSLE+KC+ LESKDG W KKE  W KR
Sbjct: 171 KCPQCNRRCSMKDVRKLYASRVVTVDEESQKMIRSLENKCASLESKDGSWRKKEEGWMKR 230

Query: 240 ETVLYHEVQKLTERNTYLEQLLLLDVQNRQSEMMDGNMKPQRRYECERNWSPKSHGKGSK 299
           E  L  +VQ L ++NTYLEQL+L D+++RQS                             
Sbjct: 231 EAALLFDVQNLKKKNTYLEQLVL-DMKSRQSGF--------------------------- 262

Query: 300 FCGEEPFCNFEFREAFRVDGARLFDMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEME 359
                    FEF+ AF + GAR+FDMDTSN I++IA+KPK +G  H +TKMSLISPFEM+
Sbjct: 263 ---------FEFQNAFHLHGARVFDMDTSNQIVIIAQKPKGMGDVHSITKMSLISPFEMQ 313

Query: 360 DIVLPSTTNAIRDLHISPSGNRLALYASLGKKLSVL 395
            I LPS+TN +RDLHISP G++ ALYAS GK+LSVL
Sbjct: 314 HIELPSSTNGVRDLHISPFGSKQALYASFGKQLSVL 349


>Medtr8g028580.1 | RING zinc finger protein | HC |
           chr8:10935030-10943158 | 20130731
          Length = 687

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 17/109 (15%)

Query: 133 DIDGLVCPICMDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGK--CPQCKSKCSL 190
           +  G +C IC +      E   C   CGHV+   C+ +W ++ K+  K  CP CK  C  
Sbjct: 6   EFSGTICSICYEPLNPVNEDLQCVSICGHVFHELCLQQWFEYCKTPKKHTCPICKQGCKA 65

Query: 191 KDVRKLYASRLVAV---------------DGNLHKRIRSLEDKCSGLES 224
           KD  +LY   +  V                G L K ++ LE K SGL +
Sbjct: 66  KDACRLYFQSIGDVKEGVVTQKNVGLEEDSGVLRKEVKRLEGKVSGLST 114