Miyakogusa Predicted Gene

Lj1g3v4604360.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4604360.2 tr|A7RL08|A7RL08_NEMVE Predicted protein
(Fragment) OS=Nematostella vectensis GN=v1g85406 PE=4
SV=1,31.72,3e-16,WD40 repeat-like,WD40-repeat-containing domain; no
description,WD40/YVTN repeat-like-containing doma,CUFF.32813.2
         (382 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g102280.1 | zinc finger, C3HC4 type (RING finger) protein ...   446   e-125

>Medtr7g102280.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr7:41278137-41273041 | 20130731
          Length = 596

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/345 (64%), Positives = 272/345 (78%), Gaps = 11/345 (3%)

Query: 38  FEFREAFRVDGARLFDMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDIVLPSTTN 97
           FEF+ AF + GAR+FDMDTSN I++IA+KPK +G  H +TKMSLISPFEM+ I LPS+TN
Sbjct: 263 FEFQNAFHLHGARVFDMDTSNQIVIIAQKPKGMGDVHSITKMSLISPFEMQHIELPSSTN 322

Query: 98  AIRDLHISPSGNRLALYASLGKKLSVLSLDSSNIVVNYDLQIPAWSCSWDLNSTNYIYAG 157
            +RDLHISP G++ ALYAS GK+LSVLSLDS   V+NYDL++PAWSCSWD NST+ IYAG
Sbjct: 323 GVRDLHISPFGSKQALYASFGKQLSVLSLDSGTPVLNYDLEVPAWSCSWDRNSTHCIYAG 382

Query: 158 LQNGSIMVFDLRQTSGPVKSLFGLSNKPVHTVQSLAQTLCLPSGARTILSASSGGICQWN 217
           LQNG ++VFD+RQT+GP+KSL GL++ PVH++QSLAQT  L SG RTILSAS+ G CQW+
Sbjct: 383 LQNGKVLVFDMRQTAGPLKSLAGLTSNPVHSLQSLAQTTGLSSGVRTILSASAIGACQWD 442

Query: 218 IDSEAGPFVVPETDNQGVCISLAYCSSSDDIVGSYRPTFDMSMDVSHSQPLLTPSQVIGQ 277
           IDS+  PF+V  TDNQ VCISLAY  SSDD V SYRP  +           LT  ++IGQ
Sbjct: 443 IDSDDRPFMVHGTDNQEVCISLAYSPSSDDTVVSYRPKLNT----------LT-GELIGQ 491

Query: 278 GVQGCHVLFKGMGSHHFQKTGSTHADVSKSLLPKCVIIDMENQSRLFASRDEVTNDLVLY 337
           GVQG HVL K  G ++FQK GS++ +VSK  LP+C+II++ NQ+R+FAS DEVT DLVL 
Sbjct: 492 GVQGSHVLLKRTGGNNFQKMGSSYGNVSKIRLPRCIIINIANQNRMFASGDEVTCDLVLQ 551

Query: 338 ELPSFRVHQQFKMPAQSRDVRYSTSHWALGCLSENSVQLFHAKFS 382
           ELPSFRV Q+FKMPAQ+RD+RYS SH  LGCLSENS+Q+F    S
Sbjct: 552 ELPSFRVIQRFKMPAQARDIRYSPSHGMLGCLSENSLQIFRTNLS 596