Miyakogusa Predicted Gene

Lj1g3v4604360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4604360.1 Non Characterized Hit- tr|E7FGP7|E7FGP7_DANRE
Uncharacterized protein OS=Danio rerio PE=4 SV=1,24.12,2e-17,WD40
repeat-like,WD40-repeat-containing domain; RING/U-box,NULL; no
description,Zinc finger, RING/FY,CUFF.32813.1
         (532 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g102280.1 | zinc finger, C3HC4 type (RING finger) protein ...   609   e-174

>Medtr7g102280.1 | zinc finger, C3HC4 type (RING finger) protein |
           HC | chr7:41278137-41273041 | 20130731
          Length = 596

 Score =  609 bits (1570), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 309/532 (58%), Positives = 378/532 (71%), Gaps = 69/532 (12%)

Query: 1   MDAWTNNGEHHICCLPCGHVYGMSCINKWLQHRKSSGKCPQCKSKCSLKDVRKLYASRLV 60
           MDAWTN G+HHICCLPCGH+YGMSC+ KWLQ +K+SGKCPQC  +CS+KDVRKLYASR+V
Sbjct: 134 MDAWTNEGDHHICCLPCGHIYGMSCVRKWLQQKKNSGKCPQCNRRCSMKDVRKLYASRVV 193

Query: 61  AVDGNLHKRIRSLEDKCSGLESKDGQWNKKEAEWKKRVATLQSKDGNWHKKEAEWKKRET 120
            VD    K IRSLE+KC                     A+L+SKDG+W KKE  W KRE 
Sbjct: 194 TVDEESQKMIRSLENKC---------------------ASLESKDGSWRKKEEGWMKREA 232

Query: 121 VLYHEVQKLTERNTYLEQLLLLDVQNRQSEMMDGNMKPQRRYECERNWSPKSHGKGSKFC 180
            L  +VQ L ++NTYLEQL+L D+++RQS                               
Sbjct: 233 ALLFDVQNLKKKNTYLEQLVL-DMKSRQSGF----------------------------- 262

Query: 181 GEEPFCNFEFREAFRVDGARLFDMDTSNDILLIARKPKAIGGEHLLTKMSLISPFEMEDI 240
                  FEF+ AF + GAR+FDMDTSN I++IA+KPK +G  H +TKMSLISPFEM+ I
Sbjct: 263 -------FEFQNAFHLHGARVFDMDTSNQIVIIAQKPKGMGDVHSITKMSLISPFEMQHI 315

Query: 241 VLPSTTNAIRDLHISPSGNRLALYASLGKKLSVLSLDSSNIVVNYDLQIPAWSCSWDLNS 300
            LPS+TN +RDLHISP G++ ALYAS GK+LSVLSLDS   V+NYDL++PAWSCSWD NS
Sbjct: 316 ELPSSTNGVRDLHISPFGSKQALYASFGKQLSVLSLDSGTPVLNYDLEVPAWSCSWDRNS 375

Query: 301 TNYIYAGLQNGSIMVFDLRQTSGPVKSLFGLSNKPVHTVQSLAQTLCLPSGARTILSASS 360
           T+ IYAGLQNG ++VFD+RQT+GP+KSL GL++ PVH++QSLAQT  L SG RTILSAS+
Sbjct: 376 THCIYAGLQNGKVLVFDMRQTAGPLKSLAGLTSNPVHSLQSLAQTTGLSSGVRTILSASA 435

Query: 361 GGICQWNIDSEAGPFVVPETDNQGVCISLAYCSSSDDIVGSYRPTFDMSMDVSHSQPLLT 420
            G CQW+IDS+  PF+V  TDNQ VCISLAY  SSDD V SYRP  +           LT
Sbjct: 436 IGACQWDIDSDDRPFMVHGTDNQEVCISLAYSPSSDDTVVSYRPKLNT----------LT 485

Query: 421 PSQVIGQGVQGCHVLFKGMGSHHFQKTGSTHADVSKSLLPKCVIIDMENQSRLFASRDEV 480
             ++IGQGVQG HVL K  G ++FQK GS++ +VSK  LP+C+II++ NQ+R+FAS DEV
Sbjct: 486 -GELIGQGVQGSHVLLKRTGGNNFQKMGSSYGNVSKIRLPRCIIINIANQNRMFASGDEV 544

Query: 481 TNDLVLYELPSFRVHQQFKMPAQSRDVRYSTSHWALGCLSENSVQLFHAKFS 532
           T DLVL ELPSFRV Q+FKMPAQ+RD+RYS SH  LGCLSENS+Q+F    S
Sbjct: 545 TCDLVLQELPSFRVIQRFKMPAQARDIRYSPSHGMLGCLSENSLQIFRTNLS 596