Miyakogusa Predicted Gene

Lj1g3v4590740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4590740.1 Non Characterized Hit- tr|I3T7J1|I3T7J1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,55.1,0.00005,
,gene.g36910.t1.1
         (76 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g102060.1 | small GTPase family RAB protein | HC | chr2:43...    50   3e-07

>Medtr2g102060.1 | small GTPase family RAB protein | HC |
           chr2:43921046-43919465 | 20130731
          Length = 200

 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 25/29 (86%)

Query: 1   MFYMETSAKTVENINDLFFEIGRQLGLAL 29
           MFYMETSAKT ENIN+LF+EIGR+L  A 
Sbjct: 147 MFYMETSAKTAENINELFYEIGRRLARAF 175