Miyakogusa Predicted Gene

Lj1g3v4579390.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4579390.1 tr|D8TW33|D8TW33_VOLCA Qc-SNARE, SYP7-family
OS=Volvox carteri GN=syp71 PE=4
SV=1,46.88,0.0000000000008,T_SNARE,Target SNARE coiled-coil domain; no
description,NULL; seg,NULL; HYPOTHETICAL PROTEIN,NULL; S,CUFF.32738.1
         (265 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g066460.1 | syntaxin of plants protein | HC | chr1:2851277...   417   e-117
Medtr7g100980.1 | syntaxin of plants protein | HC | chr7:4072795...   415   e-116
Medtr1g066460.2 | syntaxin of plants protein | HC | chr1:2851277...   408   e-114
Medtr2g093800.1 | syntaxin of plants protein | HC | chr2:4000871...   309   2e-84

>Medtr1g066460.1 | syntaxin of plants protein | HC |
           chr1:28512776-28508155 | 20130731
          Length = 265

 Score =  417 bits (1072), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 204/265 (76%), Positives = 223/265 (84%)

Query: 1   MSVIDILTRVDSIVNXXXXXXXXXXXXSNVSGDDPFAKLYAAVDADIDAALQKAETASNG 60
           MSVID+LTRVDSI              +NVSGDD F +LYA+VD+DI+A LQKAE ASN 
Sbjct: 1   MSVIDLLTRVDSICKKYDKYDLDKQNNANVSGDDAFVRLYASVDSDIEALLQKAEKASNE 60

Query: 61  KNRASTVAINAEIRRTKARLLDEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAI 120
           + +AS VAINAEIRRTKARLL+EVPKLQRLA+KKVKGL SQEFAARNDLVLALPERIQAI
Sbjct: 61  RGKASAVAINAEIRRTKARLLEEVPKLQRLALKKVKGLESQEFAARNDLVLALPERIQAI 120

Query: 121 PDGTPAAPKQAGGWAASGSRPEIKFDSNGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDGTP APKQ GGWA+S SRPEIKFDS+GRFDDEYFQ TE+S+QF+QEYEMR++KQDQGL
Sbjct: 121 PDGTPVAPKQTGGWASSASRPEIKFDSDGRFDDEYFQSTEQSNQFKQEYEMRRIKQDQGL 180

Query: 181 DVIAEGLDTLKNMAHDMNEEFDRQVPLMDEIDTKVDKASSDLKNTNVRLKHTVTQLRSSR 240
           D+IAEGLDTLK+MAHDMNEE DRQVPLMDEID KVDKASSDLKNTNVRLK TV QLRSSR
Sbjct: 181 DMIAEGLDTLKDMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLKDTVNQLRSSR 240

Query: 241 NFCXXXXXXXXXXXXAAYLYNVLKK 265
           NFC            AAYLYNVLKK
Sbjct: 241 NFCIDIVLLIIILGIAAYLYNVLKK 265


>Medtr7g100980.1 | syntaxin of plants protein | HC |
           chr7:40727955-40730728 | 20130731
          Length = 261

 Score =  415 bits (1066), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/260 (78%), Positives = 219/260 (84%)

Query: 1   MSVIDILTRVDSIVNXXXXXXXXXXXXSNVSGDDPFAKLYAAVDADIDAALQKAETASNG 60
           MSVI+ILTRVD+I              +NVS DD FAKLYA  DA+I+AALQKAETAS  
Sbjct: 1   MSVIEILTRVDTICKKYDRYDVVKHNDANVSADDAFAKLYAIFDANIEAALQKAETASKE 60

Query: 61  KNRASTVAINAEIRRTKARLLDEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAI 120
           KNRASTVAINAEIRRTKARLL+E+PKLQRLAVKKVKGLS QEF+ RNDLVL+LPERIQAI
Sbjct: 61  KNRASTVAINAEIRRTKARLLEEIPKLQRLAVKKVKGLSLQEFSTRNDLVLSLPERIQAI 120

Query: 121 PDGTPAAPKQAGGWAASGSRPEIKFDSNGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDGTPAAPKQ GGW AS +RPEIKFDS+GR DD YF+ T+ESSQFRQEYEMRKMKQD+GL
Sbjct: 121 PDGTPAAPKQTGGWGASATRPEIKFDSDGRLDDGYFEPTKESSQFRQEYEMRKMKQDEGL 180

Query: 181 DVIAEGLDTLKNMAHDMNEEFDRQVPLMDEIDTKVDKASSDLKNTNVRLKHTVTQLRSSR 240
           DVIAEGLDTLKNMAHDMNEEFDRQVPLMDEIDTKVDKASSDLKNTNVRLK TVTQLRSSR
Sbjct: 181 DVIAEGLDTLKNMAHDMNEEFDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVTQLRSSR 240

Query: 241 NFCXXXXXXXXXXXXAAYLY 260
           NFC            AAYLY
Sbjct: 241 NFCIDIVLLIIILGIAAYLY 260


>Medtr1g066460.2 | syntaxin of plants protein | HC |
           chr1:28512776-28509818 | 20130731
          Length = 261

 Score =  408 bits (1049), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/260 (76%), Positives = 218/260 (83%)

Query: 1   MSVIDILTRVDSIVNXXXXXXXXXXXXSNVSGDDPFAKLYAAVDADIDAALQKAETASNG 60
           MSVID+LTRVDSI              +NVSGDD F +LYA+VD+DI+A LQKAE ASN 
Sbjct: 1   MSVIDLLTRVDSICKKYDKYDLDKQNNANVSGDDAFVRLYASVDSDIEALLQKAEKASNE 60

Query: 61  KNRASTVAINAEIRRTKARLLDEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAI 120
           + +AS VAINAEIRRTKARLL+EVPKLQRLA+KKVKGL SQEFAARNDLVLALPERIQAI
Sbjct: 61  RGKASAVAINAEIRRTKARLLEEVPKLQRLALKKVKGLESQEFAARNDLVLALPERIQAI 120

Query: 121 PDGTPAAPKQAGGWAASGSRPEIKFDSNGRFDDEYFQQTEESSQFRQEYEMRKMKQDQGL 180
           PDGTP APKQ GGWA+S SRPEIKFDS+GRFDDEYFQ TE+S+QF+QEYEMR++KQDQGL
Sbjct: 121 PDGTPVAPKQTGGWASSASRPEIKFDSDGRFDDEYFQSTEQSNQFKQEYEMRRIKQDQGL 180

Query: 181 DVIAEGLDTLKNMAHDMNEEFDRQVPLMDEIDTKVDKASSDLKNTNVRLKHTVTQLRSSR 240
           D+IAEGLDTLK+MAHDMNEE DRQVPLMDEID KVDKASSDLKNTNVRLK TV QLRSSR
Sbjct: 181 DMIAEGLDTLKDMAHDMNEELDRQVPLMDEIDAKVDKASSDLKNTNVRLKDTVNQLRSSR 240

Query: 241 NFCXXXXXXXXXXXXAAYLY 260
           NFC            AAYLY
Sbjct: 241 NFCIDIVLLIIILGIAAYLY 260


>Medtr2g093800.1 | syntaxin of plants protein | HC |
           chr2:40008710-40011407 | 20130731
          Length = 262

 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 159/265 (60%), Positives = 185/265 (69%), Gaps = 4/265 (1%)

Query: 1   MSVIDILTRVDSIVNXXXXXXXXXXXXSNVSGDDPFAKLYAAVDADIDAALQKAETASNG 60
           MSVIDIL RVD I               N  GDD FA+LYAAVD+ I  AL K+E AS  
Sbjct: 1   MSVIDILFRVDDICKKYDKYDIDKQRELNAYGDDGFARLYAAVDSTIQQALNKSEAASKE 60

Query: 61  KNRASTVAINAEIRRTKARLLDEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAI 120
            NRA   A NAE+RR K RL+DEVPKL +L  KKVKGLSS++ A RNDLVLALPERI +I
Sbjct: 61  TNRAVAAAWNAEVRRAKGRLMDEVPKLTKLVNKKVKGLSSEDIAIRNDLVLALPERILSI 120

Query: 121 PDGTPAAPKQAGGWAASGSRPEIKFDS-NGRFDDEYFQQTEESSQFRQEYEMRKMKQDQG 179
           PDG  +A    GG   + S P IKFDS  G  D +YF Q+EES+QFR EYEMRK+KQD+G
Sbjct: 121 PDGITSAASHTGG---TSSHPHIKFDSPEGPLDSDYFNQSEESNQFRNEYEMRKIKQDEG 177

Query: 180 LDVIAEGLDTLKNMAHDMNEEFDRQVPLMDEIDTKVDKASSDLKNTNVRLKHTVTQLRSS 239
           LD+I+EGLDTLKN+A DMNEE +RQVPLMDE+D K DKA SDL+NTN+RLK T+T+LRSS
Sbjct: 178 LDIISEGLDTLKNLALDMNEEIERQVPLMDEMDAKADKAMSDLRNTNLRLKKTITELRSS 237

Query: 240 RNFCXXXXXXXXXXXXAAYLYNVLK 264
           RNFC              YLYN L+
Sbjct: 238 RNFCIDIILLCVLLGIVMYLYNALR 262