Miyakogusa Predicted Gene

Lj1g3v4579180.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4579180.1 Non Characterized Hit- tr|B6T001|B6T001_MAIZE
Putative uncharacterized protein OS=Zea mays PE=2
SV=1,29.8,0.000003,seg,NULL,CUFF.32721.1
         (312 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g100830.1 | protamine P1 family protein | HC | chr7:406377...   225   4e-59
Medtr1g066750.1 | hypothetical protein | LC | chr1:28675972-2867...   144   2e-34

>Medtr7g100830.1 | protamine P1 family protein | HC |
           chr7:40637753-40638888 | 20130731
          Length = 294

 Score =  225 bits (574), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 187/318 (58%), Gaps = 33/318 (10%)

Query: 3   KLSARAISSSPARTDKFPPPLMMRFLRTNAGXXXXXXXXXXXXPMF-LRKKNTTTTVETQ 61
           KLS     SSPARTDKFPPPLM RFLRTNAG            PMF LR K T  T  TQ
Sbjct: 2   KLSTTKSISSPARTDKFPPPLM-RFLRTNAGSRSSRRSRSS--PMFVLRNKKTIET--TQ 56

Query: 62  EPSSPKVTCMGQVRAKRSSKSTPPKRETRASSATPCRCWWIRKPNNPCRCRPVWPKWAFF 121
           EPSSPKVTCMGQVRAKRSS           SS TP   WWI+KPN PCRCR VWPKWAFF
Sbjct: 57  EPSSPKVTCMGQVRAKRSSS---------KSSTTPTHHWWIKKPN-PCRCRLVWPKWAFF 106

Query: 122 RRKSTKLKEENSAKSESNFQGR-SFEEESRMS-TCDNVPFASIS----STPPRNALLLTR 175
           RRK     +++S KSESN     + E+E R+S + ++V  A +S    STPP+NALLLTR
Sbjct: 107 RRKKPTKPKQDSVKSESNRNSNFTLEDEQRVSVSVESVDNAIVSNSNCSTPPKNALLLTR 166

Query: 176 CRSAPFRSSSLASKFWXXXXXXXXXXXXXXXXXXKPVSVRHSVSESEAKRVSESETKMEF 235
           CRSAP+RSSSLAS+FW                  +  S +    ES + +      ++  
Sbjct: 167 CRSAPYRSSSLASRFWSSPLRNEEETESTSIDDNEESSSQSQKRESVSDKEDSIGERIGL 226

Query: 236 FKELEDSLLRQGITASITNNSEGNSASRSPVVLTRCKSEPANRGLRIDPEVN-NLWKKRR 294
            K+LE+  +++ +        E +SA   PVVLTRCKSEPA    RIDPEVN NLWKK R
Sbjct: 227 TKDLEN--VQELLLKGRVKKEEEDSAVARPVVLTRCKSEPARVSYRIDPEVNSNLWKKTR 284

Query: 295 LGFATETCSVLHHHMVSD 312
           LGF          H++SD
Sbjct: 285 LGFPL--------HILSD 294


>Medtr1g066750.1 | hypothetical protein | LC |
           chr1:28675972-28674949 | 20130731
          Length = 285

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 132/310 (42%), Positives = 164/310 (52%), Gaps = 61/310 (19%)

Query: 3   KLSARAISSSPARTDKFPPPLMMRFLRTNAGXXXXXXXXXXXXPMFL--RKKNTTTTVET 60
           KLSA+ ISS P R +KFPPPLM RFL++NA              MFL  RKKNTT+ +ET
Sbjct: 2   KLSAKPISS-PGRMEKFPPPLM-RFLKSNAANKSRGRTRSKSNSMFLILRKKNTTS-IET 58

Query: 61  QEPSSPKVTCMGQVRAKRSSKSTPPKRETRASSA----TPCRC--WWIRKPNNPCRCRPV 114
           +EPSSPKVTCMGQVR KRSSK  P  ++ R SS     + CRC  WW+  P+    C  V
Sbjct: 59  KEPSSPKVTCMGQVRVKRSSKQ-PTTKKGRPSSGDGAPSKCRCPFWWV--PHTLFCCHFV 115

Query: 115 WPKWA---FFRRKSTKLK-EENSAKSESN-------------FQGRSFEEESRMSTCDNV 157
                    FRRKS   K  E S K+ S                 R F+ +  +S  D+ 
Sbjct: 116 RKDSVCCFGFRRKSKASKVSEASMKNGSKESYIEEEEEEEEEENNRVFKAKVLVS--DSN 173

Query: 158 PFASISSTPPRNALLLTRCRSAPFRSSSLASKFWXXXXXXXXXXXXXXXXXXKPVSVRHS 217
             ++  STPP+NALLLTRC+SAP+ SSSLAS+FW                   P+    +
Sbjct: 174 DSSTFCSTPPKNALLLTRCKSAPYSSSSLASRFWGS-----------------PLRNEET 216

Query: 218 VSESEAKRV-SESETKMEFFKELEDSLLRQGITAS--------ITNNSEGNSASRSPVVL 268
              SE K+  S S +K+ FFKELEDS  R+ IT S             EG S +  P+VL
Sbjct: 217 EQPSEEKQSESVSVSKLRFFKELEDS-ARERITESEKVCEMKRKEETEEGESIA-FPLVL 274

Query: 269 TRCKSEPANR 278
           TRCKSE A +
Sbjct: 275 TRCKSERARK 284