Miyakogusa Predicted Gene

Lj1g3v4578910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4578910.1 Non Characterized Hit- tr|B8LP65|B8LP65_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,47.37,3e-16,seg,NULL,CUFF.32697.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g100570.1 | transmembrane protein, putative | HC | chr7:40...   129   1e-30
Medtr7g061255.1 | transmembrane protein, putative | HC | chr7:22...   125   9e-30

>Medtr7g100570.1 | transmembrane protein, putative | HC |
           chr7:40506955-40505431 | 20130731
          Length = 145

 Score =  129 bits (323), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/133 (53%), Positives = 77/133 (57%), Gaps = 7/133 (5%)

Query: 4   MDIHVHLPLPPGFTXXXXXXXXXXXXXXXXXXXXXXXXKFI-CSKRXXXXXXXXXXXXXX 62
           MDIH H+ +P  F                         KF+ CSKR              
Sbjct: 1   MDIHTHISIPTTFISHRFSSPTQTLSSSSFHSYFPF--KFVVCSKRDDQSQTNADNNGDK 58

Query: 63  XXXXXXXXWDKAWKNFKKQGRKTLFSQFSPDKYVSWNPRRTDFPLSEEVDPIKRTERSNL 122
                   WDKAW NFKKQG+KTLFS FSP+KYVSWNPRR+DFPLSEEVDPIKRTERSNL
Sbjct: 59  SSTD----WDKAWSNFKKQGKKTLFSNFSPNKYVSWNPRRSDFPLSEEVDPIKRTERSNL 114

Query: 123 NLWTSPTFTLGGA 135
             WTSPTFTLGGA
Sbjct: 115 KFWTSPTFTLGGA 127


>Medtr7g061255.1 | transmembrane protein, putative | HC |
           chr7:22138990-22137464 | 20130731
          Length = 121

 Score =  125 bits (315), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 58/65 (89%), Positives = 61/65 (93%)

Query: 71  WDKAWKNFKKQGRKTLFSQFSPDKYVSWNPRRTDFPLSEEVDPIKRTERSNLNLWTSPTF 130
           WDKAW NFKKQG+KTLFS FSP+KYVSWNPRR+DFPLSEEVDPIKRTERSNL  WTSPTF
Sbjct: 9   WDKAWSNFKKQGKKTLFSNFSPNKYVSWNPRRSDFPLSEEVDPIKRTERSNLKFWTSPTF 68

Query: 131 TLGGA 135
           TLGGA
Sbjct: 69  TLGGA 73