Miyakogusa Predicted Gene

Lj1g3v4578800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4578800.1 Non Characterized Hit- tr|F6HHA9|F6HHA9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,69.65,0,SUBFAMILY NOT NAMED,NULL; UNCHARACTERIZED,NULL;
Ribonuclease H-like,Ribonuclease H-like domain; C2H2,CUFF.32685.1
         (1206 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g036325.1 | hypothetical protein | LC | chr4:13081348-1308...    64   1e-09
Medtr4g120840.1 | hypothetical protein | HC | chr4:50046505-5004...    56   2e-07
Medtr4g115290.1 | hypothetical protein | HC | chr4:47599184-4760...    55   3e-07

>Medtr4g036325.1 | hypothetical protein | LC |
           chr4:13081348-13082899 | 20130731
          Length = 204

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 2/98 (2%)

Query: 680 MVIMHDYP-LHMVEHPGFVAFVKNLQPQFNMVSFNTVQGDCVAAYLNGRSFLVKYFRGLP 738
           M+I+H+YP L +V+H GF A+ + LQ  F + S NTV+ D +  Y N +   +     + 
Sbjct: 1   MIIIHEYPPLSIVDHLGFRAYSEGLQHLFKVPSRNTVKSDIIKIYENEKLKTMGLLDKIE 60

Query: 739 GRVCLTLDVWSSS-QSVGYVLITGHFSDSDWKLHRRVL 775
            ++ LT  + ++S Q  GY++IT H+   DW +  R+L
Sbjct: 61  SKIALTSYMLTASNQKKGYMVITAHYISDDWSMQSRIL 98


>Medtr4g120840.1 | hypothetical protein | HC |
           chr4:50046505-50047138 | 20130731
          Length = 109

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/85 (34%), Positives = 46/85 (54%)

Query: 677 IAKMVIMHDYPLHMVEHPGFVAFVKNLQPQFNMVSFNTVQGDCVAAYLNGRSFLVKYFRG 736
           IA++VI+   P  +VE   F    K LQP +N+ S  TV  DC   + + +  L+ YF+ 
Sbjct: 22  IARLVILSKLPFSVVESDRFNRLCKLLQPLWNIPSRRTVARDCFRMFRDEKFKLIAYFKS 81

Query: 737 LPGRVCLTLDVWSSSQSVGYVLITG 761
              ++ LT  VW+S Q+  Y+ +T 
Sbjct: 82  DCSKLALTPKVWTSIQNFSYISLTA 106


>Medtr4g115290.1 | hypothetical protein | HC |
           chr4:47599184-47600003 | 20130731
          Length = 89

 Score = 55.5 bits (132), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%)

Query: 742 CLTLDVWSSSQSVGYVLITGHFSDSDWKLHRRVLNVVMEPYPDSDT-AISHAVAACIMDW 800
           C     W+S   +    I  H   +D  +    LNVVMEPYPDSD+ AISHAV+AC+ DW
Sbjct: 9   CCLRSGWTSDDELDNTTIE-HNKLNDGAMRWLYLNVVMEPYPDSDSAAISHAVSACLSDW 67

Query: 801 NLQ 803
           N +
Sbjct: 68  NFK 70