Miyakogusa Predicted Gene

Lj1g3v4565030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4565030.1 Non Characterized Hit- tr|I3S5C7|I3S5C7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,96.9,0,no
description,NULL; Diaminopimelate epimerase-like,NULL;
DAP_EPIMERASE,Diaminopimelate epimerase,
a,NODE_21136_length_1091_cov_293.017426.path2.1
         (226 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

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                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g100345.1 | diaminopimelate epimerase | HC | chr7:40253124...   390   e-109
Medtr7g072350.1 | diaminopimelate epimerase | HC | chr7:26881537...   166   1e-41

>Medtr7g100345.1 | diaminopimelate epimerase | HC |
           chr7:40253124-40246864 | 20130731
          Length = 361

 Score =  390 bits (1002), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/226 (84%), Positives = 202/226 (89%)

Query: 1   MRIFNSDGSEPEMCGNGVRCFAKFISQVENIHGRHSFTIHTGAGLIVPEVLEDGNVRVDM 60
           MRIFNSDGSEPEMCGNGVRCFAKF+SQ+E++HGRHSFTIHTGAG IVPEVL DGNVRVDM
Sbjct: 136 MRIFNSDGSEPEMCGNGVRCFAKFVSQLESLHGRHSFTIHTGAGKIVPEVLGDGNVRVDM 195

Query: 61  GEPVLKASDVPTKLPANKDGAVVKSELDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVD 120
           GEPVLKASDVPTKL  NKD AVVKSE+DVDG IWNVTCVSMGNPHC+TFS KGSQ+LLVD
Sbjct: 196 GEPVLKASDVPTKLSPNKDHAVVKSEIDVDGSIWNVTCVSMGNPHCVTFSNKGSQNLLVD 255

Query: 121 ELKLAEIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERXXXXXXXXXXXXXXXVVAA 180
           ELKLAEIGPKFEHHE+FPARTNTEFVQVLSNSHLKMRVWER               VVAA
Sbjct: 256 ELKLAEIGPKFEHHEVFPARTNTEFVQVLSNSHLKMRVWERGAGATLACGTGACAVVVAA 315

Query: 181 VLEGHTGRNCTVDLPGGPLQIEWREEDNHVYMTGSADLVYYGSLPL 226
           VLEG  GR+CTVDLPGGPLQIEW++EDNHVYMTGSA+LVYYGSLPL
Sbjct: 316 VLEGRAGRDCTVDLPGGPLQIEWKDEDNHVYMTGSAELVYYGSLPL 361


>Medtr7g072350.1 | diaminopimelate epimerase | HC |
           chr7:26881537-26879308 | 20130731
          Length = 231

 Score =  166 bits (421), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/160 (60%), Positives = 107/160 (66%), Gaps = 15/160 (9%)

Query: 1   MRIFNSDGSEPEMCGNGVRCFAKFISQVENIHGRHSFTIHTGAGLIVPEVLEDGNVRVDM 60
           MRIFNSDGSEPE     VR           I    S T      L    V  + +  +++
Sbjct: 83  MRIFNSDGSEPE-----VRIV---------ICSWSSLTDKFALFLTFMHVAMECDALLNL 128

Query: 61  GEPVLKASDVPTKLPANKDGAVVKSELDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVD 120
              +        KL  NKD A VKSE+DVDGVIWNVTCVSMGNPHCITF+RK SQ+LLVD
Sbjct: 129 FLSLRVYRGGIDKLSPNKDHAAVKSEIDVDGVIWNVTCVSMGNPHCITFNRKESQNLLVD 188

Query: 121 ELKLAEIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWE 160
           ELKLAEIGPKFEH+EMFPARTN +FVQVLSNSHLKMRVWE
Sbjct: 189 ELKLAEIGPKFEHYEMFPARTN-KFVQVLSNSHLKMRVWE 227