Miyakogusa Predicted Gene
- Lj1g3v4552380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4552380.1 tr|B9HBE4|B9HBE4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_560728 PE=4
SV=1,43.75,5e-18,seg,NULL,CUFF.32639.1
(252 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g099950.1 | hypothetical protein | HC | chr7:40175410-4017... 202 2e-52
Medtr1g068825.2 | hypothetical protein | HC | chr1:29396845-2940... 106 2e-23
Medtr1g068825.1 | hypothetical protein | HC | chr1:29396818-2940... 106 2e-23
>Medtr7g099950.1 | hypothetical protein | HC |
chr7:40175410-40173168 | 20130731
Length = 335
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/255 (49%), Positives = 153/255 (60%), Gaps = 7/255 (2%)
Query: 1 MDMCSRVPDVHNNLLSNLESTSHESLHVDDALKSELATEGNGVCDVGEENLSGGVKQQET 60
M++CS V D+H N +SNLEST ESLH+ D KSE +EG+ +C+VG+ENLSG KQ+++
Sbjct: 85 MEVCSSVNDMHENCISNLESTFSESLHIQDTEKSEHLSEGDAMCNVGKENLSGVNKQKKS 144
Query: 61 KLNMICLTKSATFPIPH-MMXXXXXXXXXXXXVAKSNSEQSASQTYSRSVSLPAP-ELIP 118
K N +CL KSATFP PH M+ V +S +E SA Q YSRS+SLPAP EL
Sbjct: 145 KPNKVCLNKSATFPTPHVMLPSSSSDEDADSSVTESLNEHSAHQAYSRSISLPAPSELKS 204
Query: 119 ALKGSREKYRGSPM-KLTVKWAPDVYDPVPTLMSHTVXXXXXXXXXXXXXXXXXXXXXXX 177
ALKGSR+K G P KLTVKWA DVYDPVPTL+SHTV
Sbjct: 205 ALKGSRDK-NGEPHGKLTVKWAADVYDPVPTLVSHTV--KNKKQPKSRKKKNEKKNAKKG 261
Query: 178 XXXXXXXXXXXXXXXXARKQGGHSDLSFESLDSHDNVTGTSELDALDVRSHDSFCGTSFL 237
+R G SDL +S DS + G+SE D+LDV S DS CG+SFL
Sbjct: 262 NKGNSTRGGNGKDKKQSRNVCGQSDLCSKSWDSQV-IEGSSEFDSLDVCSQDSNCGSSFL 320
Query: 238 KNSVTKVHSLVAEAQ 252
K SVT+VH VAEAQ
Sbjct: 321 KKSVTEVHYSVAEAQ 335
>Medtr1g068825.2 | hypothetical protein | HC |
chr1:29396845-29400006 | 20130731
Length = 257
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 1 MDMCSRVPDVHNNLLSNLESTSHESLHVDDALKSELATE----GNGVCDVGEENLSGGVK 56
MD+ S V +++S LE T SLH+ D K E ++ G+ C++GE ++ +
Sbjct: 1 MDIHSPANVVECDIISKLEITFGGSLHIQDDQKLEHVSDDDEDGSSNCNIGEGHICCVFE 60
Query: 57 QQETKLNMICLTKSATFPIPHMMXXXXXXXXXXXXVAKSNSEQSASQTYSRSVSLPAP-E 115
Q+ET L + L + +TFP P M+ A + +S S+ SVS PAP +
Sbjct: 61 QEETTLKVKSLKECSTFPYPDMVLPSSSSDDEEADGALT---ESLSKQLPDSVSQPAPAK 117
Query: 116 LIPALKGSREKYRGSPMKLTVKWAPDVYDPVPTLMSHTV 154
L+ A+KGSR+K+ GS MKL+VKWAPDVYDPVPTL SHTV
Sbjct: 118 LVSAMKGSRKKHLGSQMKLSVKWAPDVYDPVPTLSSHTV 156
>Medtr1g068825.1 | hypothetical protein | HC |
chr1:29396818-29400008 | 20130731
Length = 257
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 94/159 (59%), Gaps = 8/159 (5%)
Query: 1 MDMCSRVPDVHNNLLSNLESTSHESLHVDDALKSELATE----GNGVCDVGEENLSGGVK 56
MD+ S V +++S LE T SLH+ D K E ++ G+ C++GE ++ +
Sbjct: 1 MDIHSPANVVECDIISKLEITFGGSLHIQDDQKLEHVSDDDEDGSSNCNIGEGHICCVFE 60
Query: 57 QQETKLNMICLTKSATFPIPHMMXXXXXXXXXXXXVAKSNSEQSASQTYSRSVSLPAP-E 115
Q+ET L + L + +TFP P M+ A + +S S+ SVS PAP +
Sbjct: 61 QEETTLKVKSLKECSTFPYPDMVLPSSSSDDEEADGALT---ESLSKQLPDSVSQPAPAK 117
Query: 116 LIPALKGSREKYRGSPMKLTVKWAPDVYDPVPTLMSHTV 154
L+ A+KGSR+K+ GS MKL+VKWAPDVYDPVPTL SHTV
Sbjct: 118 LVSAMKGSRKKHLGSQMKLSVKWAPDVYDPVPTLSSHTV 156