Miyakogusa Predicted Gene

Lj1g3v4551350.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4551350.1 tr|Q6ZNE1|Q6ZNE1_HUMAN cDNA FLJ16186 fis, clone
BRTHA2007060, moderately similar to EUKARYOTIC TRANS,87.86,0,seg,NULL;
coiled-coil,NULL; PCI,Proteasome component (PCI) domain; SUBFAMILY NOT
NAMED,NULL; EUKARYO,CUFF.32634.1
         (960 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g099920.1 | eukaryotic translation initiation factor 3a | ...  1206   0.0  
Medtr7g099920.2 | eukaryotic translation initiation factor 3a | ...  1107   0.0  
Medtr7g087180.1 | eukaryotic translation initiation factor 3a | ...   868   0.0  
Medtr7g098840.1 | eukaryotic translation initiation factor 3A | ...   142   2e-33
Medtr7g053110.1 | eukaryotic translation initiation factor 3A | ...    80   1e-14

>Medtr7g099920.1 | eukaryotic translation initiation factor 3a | HC
           | chr7:40165155-40158125 | 20130731
          Length = 959

 Score = 1206 bits (3119), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 626/936 (66%), Positives = 662/936 (70%), Gaps = 9/936 (0%)

Query: 1   MTSFLKPENALKRAEELINVGQKQDALQTLHDVITSKRYRAWQKTLERIMFKYVELCVEL 60
           MTSFLKPENALKRAEELINVGQKQDALQTLHD+ITSKRYRAWQKTLERIMFKYVELCV++
Sbjct: 1   MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDM 60

Query: 61  RKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQXXXXXXXXXXXX 120
           RKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQ            
Sbjct: 61  RKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLE 120

Query: 121 XXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180
             KRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH
Sbjct: 121 ADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180

Query: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSIPESLQLYLDTRFEQLKI 240
           RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLS PESLQLYLDTRFEQLKI
Sbjct: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI 240

Query: 241 ATELELWQEAFRSVEDIHGLMCMVKKVPKASLMAIYYVKLTEIFWVSSSHLYHAYAWFRL 300
           ATELELWQEAFRSVEDIHGLMCMVKK PK SLM +YYVKLTEIFW SSSHLYHAYAWF+L
Sbjct: 241 ATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWKSSSHLYHAYAWFKL 300

Query: 301 FLLQKSFNKNLSQKDLQXXXXXXXXXXXXXPPHDHTHGASHLELEHEKERNLRMSNLIGF 360
           FLLQKSFNKNL QKDLQ             PPHD THGASHLELEHEKERNLRM+NLIGF
Sbjct: 301 FLLQKSFNKNLGQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGF 360

Query: 361 NLENKPXXXXXXXXXXXXXXXXXKGVMSCVTQEVKDIHYLLEHEFLPSDLAQKVLPLLTK 420
           NLE KP                 KGVMSCV+QEVKDI+YLLE+EFLPSDLA KVLPLL K
Sbjct: 361 NLETKPDSREVLSRSSLLAELASKGVMSCVSQEVKDIYYLLENEFLPSDLALKVLPLLNK 420

Query: 421 FSKLGGKLSTASSIPEVHLSQYVPALEKLATLRLLQQVSNVYQTMKIETLSGMIPFFEFS 480
            SKLGGK + ASS+PEV  SQYVPALEKLATLRLLQQVSNVYQ+MKIE L+GMIPFF+FS
Sbjct: 421 ISKLGGKFTFASSVPEVQFSQYVPALEKLATLRLLQQVSNVYQSMKIENLAGMIPFFDFS 480

Query: 481 VVEKISVDAVKQKFVSMKVDHMKNVVIFCKMSLESDGLRDHLANFAERLNKARQMIYPPD 540
           VVEKISVDAVKQKF+SMKVDHMKNVVIFCK SLE+DGLRDHLA+FAE+LNKARQMI PPD
Sbjct: 481 VVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSLEADGLRDHLASFAEQLNKARQMICPPD 540

Query: 541 RKPSKLGALLPTLTEVVAKEHKRLLARKSIIXXXXXXXXXXXXXXXXXXXXXXXXXXXIT 600
           RK SKLGALLPTL+EVVAKEHKRLLARKSII                           I 
Sbjct: 541 RKQSKLGALLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLLEKEREEESKRLRLLKID 600

Query: 601 EEAEQRRLATEYEQRKXXXXXXXXXXXXXXXXXXXXXXXXKRIKKRGKKPMIEGEKIXXX 660
           EEAEQRRLATE EQRK                        KR+K++GKKP+IEG +I   
Sbjct: 601 EEAEQRRLATEIEQRKIQRLQREKEERDREEAEALRLEAEKRLKRKGKKPVIEGGQISRE 660

Query: 661 XXXXXXXXXXXXXXXXMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQXXXXXXXXXXXX 720
                           MEKKLQKLAKTMDHLERAKREEAAPLI+AAYQ            
Sbjct: 661 SLMQLTLVEQVRERQEMEKKLQKLAKTMDHLERAKREEAAPLIDAAYQQRLVEERVLHER 720

Query: 721 XXXXXVEVSRQRHEGDLIEKERLSRMMGSKEIYQERVVNQRQAXXXXXXXXXXXXXSKIL 780
                VE+SRQRH GDL EKERLSRMMG+KEIYQERVV+ RQA             SKIL
Sbjct: 721 EQQLEVELSRQRHAGDLNEKERLSRMMGNKEIYQERVVSHRQAEFNRLQRDRLDRISKIL 780

Query: 781 QTRRQDREKARKLKYYLQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXISXXX 840
            +R+Q+REK RKLKYYL+V                                    I+   
Sbjct: 781 LSRKQEREKMRKLKYYLKVEEEKRQKLREEEEAREREEAERKKKEQAERQAKLDEIAEKQ 840

Query: 841 XXX-XXXXXXXXXXXXXXXXGRPTEPVLKXXX---XXXXXXXXXXXXXXXXXXXGRYVPR 896
                               GRP EP L+                         G+YVP+
Sbjct: 841 KQRLREIEEKAEREKREALLGRPAEPALRPYEPPVRPVDPGTAAPAAAAAAPAPGKYVPK 900

Query: 897 HRRQGGEXXXXXXXXXXXXETDRWNNSSSRPDGDRW 932
            RR GGE            E DRW NS SRPDGDRW
Sbjct: 901 FRRGGGE-----TAGAPPPEADRWGNSGSRPDGDRW 931


>Medtr7g099920.2 | eukaryotic translation initiation factor 3a | HC
           | chr7:40164501-40158180 | 20130731
          Length = 910

 Score = 1107 bits (2864), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/887 (65%), Positives = 613/887 (69%), Gaps = 9/887 (1%)

Query: 50  MFKYVELCVELRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQX 109
           MFKYVELCV++RKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQ 
Sbjct: 1   MFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQA 60

Query: 110 XXXXXXXXXXXXXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNS 169
                        KRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNS
Sbjct: 61  LEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNS 120

Query: 170 KLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSIPESLQL 229
           KLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLS PESLQL
Sbjct: 121 KLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQL 180

Query: 230 YLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKVPKASLMAIYYVKLTEIFWVSSS 289
           YLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKK PK SLM +YYVKLTEIFW SSS
Sbjct: 181 YLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMTVYYVKLTEIFWKSSS 240

Query: 290 HLYHAYAWFRLFLLQKSFNKNLSQKDLQXXXXXXXXXXXXXPPHDHTHGASHLELEHEKE 349
           HLYHAYAWF+LFLLQKSFNKNL QKDLQ             PPHD THGASHLELEHEKE
Sbjct: 241 HLYHAYAWFKLFLLQKSFNKNLGQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKE 300

Query: 350 RNLRMSNLIGFNLENKPXXXXXXXXXXXXXXXXXKGVMSCVTQEVKDIHYLLEHEFLPSD 409
           RNLRM+NLIGFNLE KP                 KGVMSCV+QEVKDI+YLLE+EFLPSD
Sbjct: 301 RNLRMANLIGFNLETKPDSREVLSRSSLLAELASKGVMSCVSQEVKDIYYLLENEFLPSD 360

Query: 410 LAQKVLPLLTKFSKLGGKLSTASSIPEVHLSQYVPALEKLATLRLLQQVSNVYQTMKIET 469
           LA KVLPLL K SKLGGK + ASS+PEV  SQYVPALEKLATLRLLQQVSNVYQ+MKIE 
Sbjct: 361 LALKVLPLLNKISKLGGKFTFASSVPEVQFSQYVPALEKLATLRLLQQVSNVYQSMKIEN 420

Query: 470 LSGMIPFFEFSVVEKISVDAVKQKFVSMKVDHMKNVVIFCKMSLESDGLRDHLANFAERL 529
           L+GMIPFF+FSVVEKISVDAVKQKF+SMKVDHMKNVVIFCK SLE+DGLRDHLA+FAE+L
Sbjct: 421 LAGMIPFFDFSVVEKISVDAVKQKFLSMKVDHMKNVVIFCKTSLEADGLRDHLASFAEQL 480

Query: 530 NKARQMIYPPDRKPSKLGALLPTLTEVVAKEHKRLLARKSIIXXXXXXXXXXXXXXXXXX 589
           NKARQMI PPDRK SKLGALLPTL+EVVAKEHKRLLARKSII                  
Sbjct: 481 NKARQMICPPDRKQSKLGALLPTLSEVVAKEHKRLLARKSIIEKRKEEQERQLLEKEREE 540

Query: 590 XXXXXXXXXITEEAEQRRLATEYEQRKXXXXXXXXXXXXXXXXXXXXXXXXKRIKKRGKK 649
                    I EEAEQRRLATE EQRK                        KR+K++GKK
Sbjct: 541 ESKRLRLLKIDEEAEQRRLATEIEQRKIQRLQREKEERDREEAEALRLEAEKRLKRKGKK 600

Query: 650 PMIEGEKIXXXXXXXXXXXXXXXXXXXMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQX 709
           P+IEG +I                   MEKKLQKLAKTMDHLERAKREEAAPLI+AAYQ 
Sbjct: 601 PVIEGGQISRESLMQLTLVEQVRERQEMEKKLQKLAKTMDHLERAKREEAAPLIDAAYQQ 660

Query: 710 XXXXXXXXXXXXXXXXVEVSRQRHEGDLIEKERLSRMMGSKEIYQERVVNQRQAXXXXXX 769
                           VE+SRQRH GDL EKERLSRMMG+KEIYQERVV+ RQA      
Sbjct: 661 RLVEERVLHEREQQLEVELSRQRHAGDLNEKERLSRMMGNKEIYQERVVSHRQAEFNRLQ 720

Query: 770 XXXXXXXSKILQTRRQDREKARKLKYYLQVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 829
                  SKIL +R+Q+REK RKLKYYL+V                              
Sbjct: 721 RDRLDRISKILLSRKQEREKMRKLKYYLKVEEEKRQKLREEEEAREREEAERKKKEQAER 780

Query: 830 XXXXXXISXXXXXX-XXXXXXXXXXXXXXXXGRPTEPVLKXXX---XXXXXXXXXXXXXX 885
                 I+                       GRP EP L+                    
Sbjct: 781 QAKLDEIAEKQKQRLREIEEKAEREKREALLGRPAEPALRPYEPPVRPVDPGTAAPAAAA 840

Query: 886 XXXXXGRYVPRHRRQGGEXXXXXXXXXXXXETDRWNNSSSRPDGDRW 932
                G+YVP+ RR GGE            E DRW NS SRPDGDRW
Sbjct: 841 AAPAPGKYVPKFRRGGGE-----TAGAPPPEADRWGNSGSRPDGDRW 882


>Medtr7g087180.1 | eukaryotic translation initiation factor 3a | HC
           | chr7:33950498-33944753 | 20130731
          Length = 849

 Score =  868 bits (2242), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/571 (75%), Positives = 468/571 (81%), Gaps = 8/571 (1%)

Query: 1   MTSFLKPENALKRAEELINVGQKQDALQTLHDVITSKRYRAWQKTLERIMFKYVELCVEL 60
           M  FLK ENALKRAEELINV QKQ ALQTLHDVITSKRYR+WQ+  E+IMFKYVELCV+L
Sbjct: 1   MALFLK-ENALKRAEELINVEQKQGALQTLHDVITSKRYRSWQEIQEKIMFKYVELCVDL 59

Query: 61  RKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQXXXXXXXXXXXX 120
           RKG+FAKDGLI YRIICQQVNV SLEEV+K F+HLSTEKAE+A SQA+            
Sbjct: 60  RKGQFAKDGLIHYRIICQQVNVGSLEEVVKRFIHLSTEKAEKACSQAREMEQALDVDDLE 119

Query: 121 XXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180
             KRPEDL+  YVS EKGKDRSDRELVT  FKFLWETYR VLE+LRNNSK EALYAMTA+
Sbjct: 120 ADKRPEDLLKCYVSEEKGKDRSDRELVTARFKFLWETYRIVLEVLRNNSKFEALYAMTAY 179

Query: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSIPESLQLYLDTRFEQLKI 240
           RA QFCKQYKR TEFRRLCEI+RNHLANLNKY DQRDRPDLS PESLQLYLDTRFEQLKI
Sbjct: 180 RALQFCKQYKRKTEFRRLCEILRNHLANLNKYPDQRDRPDLSAPESLQLYLDTRFEQLKI 239

Query: 241 ATELELWQEAFRSVEDIHGLMCMVKKVPKASLMAIYYVKLTEIFWVSSSHLYHAYAWFRL 300
           ATELELW+EAFRSVEDIHGLMCM KK  K SLM +YY  L EIFW+SSSHLYHAYAWF+L
Sbjct: 240 ATELELWKEAFRSVEDIHGLMCMAKKTLKPSLMTVYYATLIEIFWISSSHLYHAYAWFKL 299

Query: 301 FLLQKSFNKNLSQKDLQXXXXXXXXXXXXXPPHDHTHGASHLELEHEKERNLRMSNLIGF 360
           FLLQKSFNK+LSQKDL+             PPHD      +LELEHEKERNLRM+NLIGF
Sbjct: 300 FLLQKSFNKDLSQKDLEFIASSVVLAALSVPPHDR-----NLELEHEKERNLRMANLIGF 354

Query: 361 NLENKPXXXXXXXXXXXXXXXXXKGVMSCVTQEVKDIHYLLEHEFLPSDLAQKVLPLLTK 420
           NL+NK                  KGVMSCV QEVKDI+YLLE++FLPSD A KV PLL K
Sbjct: 355 NLKNKMNSSKVLSRSSLLAELASKGVMSCVAQEVKDIYYLLENKFLPSDFALKVPPLLNK 414

Query: 421 FSKLGGKLSTASSIPEVHLSQYVPALEKLATLRLLQQVSNVYQTMKIETLSGMIPFFEFS 480
            SKLGGK S ASS+PEV LSQYVPAL+KLATLRLLQQVSNVYQTMK+E L+GM+PF +FS
Sbjct: 415 ISKLGGKFSFASSVPEVQLSQYVPALKKLATLRLLQQVSNVYQTMKVENLAGMMPFSDFS 474

Query: 481 VVEKISVDAVKQKFVSMKVDHMKNVVIFCKMSLESDGLRDHLANFAERLNKARQMIYPPD 540
           VVEKISVDAV QKF+SMKVDHMK VVIFCK SLE+DGLRDHLA+ A  LNKAR+MI PPD
Sbjct: 475 VVEKISVDAVNQKFLSMKVDHMKKVVIFCKKSLEADGLRDHLASSA--LNKAREMISPPD 532

Query: 541 RKPSKLGALLPTLTEVVAKEHKRLLARKSII 571
           RK SKLG LLP+L EVVAK+HK LLARKSII
Sbjct: 533 RKQSKLGPLLPSLLEVVAKDHKILLARKSII 563



 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 73/123 (59%), Gaps = 19/123 (15%)

Query: 677 MEKKLQKLAKTMDHLERAKREEAAPLIEAAYQXXXXXXXXXXXXXXXXXVEVSRQRHEGD 736
           MEKKL+KL+KTMD LERAKREE+APLIEAAYQ                 +    Q+ E +
Sbjct: 638 MEKKLKKLSKTMDFLERAKREESAPLIEAAYQ---------QRLVEERILHEREQQQEAE 688

Query: 737 LIEKERLSRMMGSKEIYQERVVNQRQAXXXXXXXXXXXXXSKILQTRRQDREKARKLKYY 796
           L  KERLS  M +K I++E+V N+R+                  ++R+Q+REK RKLK+Y
Sbjct: 689 L--KERLSHRMENK-IFEEKVFNRRKVEFNRLGGERE-------ESRKQEREKMRKLKHY 738

Query: 797 LQV 799
           L++
Sbjct: 739 LRL 741


>Medtr7g098840.1 | eukaryotic translation initiation factor 3A | HC
           | chr7:39609039-39610673 | 20130731
          Length = 230

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 86/123 (69%)

Query: 677 MEKKLQKLAKTMDHLERAKREEAAPLIEAAYQXXXXXXXXXXXXXXXXXVEVSRQRHEGD 736
           MEKKLQKLAKTMDHLERAKREEAAPLIEAAYQ                 VE+SRQRH  D
Sbjct: 66  MEKKLQKLAKTMDHLERAKREEAAPLIEAAYQHGLVEERILYEREQQQEVELSRQRHAAD 125

Query: 737 LIEKERLSRMMGSKEIYQERVVNQRQAXXXXXXXXXXXXXSKILQTRRQDREKARKLKYY 796
           LIEKERLSRMMG KEIYQERVV+ RQ              S+IL +R+Q+REK RKLKYY
Sbjct: 126 LIEKERLSRMMGCKEIYQERVVSHRQVEFNRLMREREERISRILPSRKQEREKMRKLKYY 185

Query: 797 LQV 799
           L++
Sbjct: 186 LEL 188


>Medtr7g053110.1 | eukaryotic translation initiation factor 3A | HC
           | chr7:18698090-18696928 | 20130731
          Length = 206

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/180 (35%), Positives = 78/180 (43%), Gaps = 46/180 (25%)

Query: 529 LNKARQMIYPPDRKPSKLGALLPTLTEVVAKEHKRLLARKSIIXXXXXXXXXXXXXXXXX 588
           +NKA+QMI PPDRK SKLGALL +L+EVVA+E K+LLA                      
Sbjct: 1   MNKAKQMICPPDRKQSKLGALLSSLSEVVAEERKKLLA----------------PEMEQA 44

Query: 589 XXXXXXXXXXITEEAEQRRLATEYEQRKXXXXXXXXXXXXXXXXXXXXXXXXKRIKKRGK 648
                     ITE AE+ RL    EQR+                        K  K++  
Sbjct: 45  EESKRLRVQQITEGAEEMRLTAALEQRRNQRICREITERDYKQTQVSLQEAKKPFKRQ-- 102

Query: 649 KPMIEGEKIXXXXXXXXXXXXXXXXXXXMEKKLQKLAKTMDHLERAKREEAAPLIEAAYQ 708
                                       MEK L+KL KT+D LERAKR ++APLIEAAYQ
Sbjct: 103 ----------------------------MEKILKKLIKTIDFLERAKRGKSAPLIEAAYQ 134