Miyakogusa Predicted Gene

Lj1g3v4551280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4551280.1 CUFF.32641.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g099860.1 | transmembrane protein, putative | HC | chr7:40...   126   4e-30
Medtr2g096630.1 | transmembrane protein, putative | HC | chr2:41...    55   1e-08

>Medtr7g099860.1 | transmembrane protein, putative | HC |
          chr7:40105619-40104341 | 20130731
          Length = 117

 Score =  126 bits (317), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 79/94 (84%)

Query: 1  MSHWLSELFHWRLTTPWPILAYAATWMTLLTVTVAVASISPQVAFVTGVSPSSSFSQKCR 60
          MS WLS  F    TTPWPIL YA TW+ LLT+TVAVASI+PQV FV+ +SPSSSFSQKCR
Sbjct: 1  MSLWLSNFFRLHFTTPWPILTYATTWIALLTLTVAVASIAPQVTFVSAISPSSSFSQKCR 60

Query: 61 ADGSIRIPLDLPGEILCFPASMFMKSKIDLILPP 94
           DG IR+PLD+PGEILCFP+ +F+KSK+DLI+PP
Sbjct: 61 NDGLIRMPLDVPGEILCFPSHLFVKSKLDLIVPP 94


>Medtr2g096630.1 | transmembrane protein, putative | HC |
          chr2:41260652-41261149 | 20130731
          Length = 110

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 20 LAYAATWMTLLTVTVAVASISPQVAFVTGVSPSSSFSQKCRADGSIRIPLDLPGEILCFP 79
          L YA TW  LL VTV + S++P VAF+  VS S   S+ C     +RIP D P E++C P
Sbjct: 18 LPYATTWTVLLIVTVVLTSLAPGVAFMFAVSQS---SKPCHHHEFVRIPFDSPTEMVCLP 74

Query: 80 ASMFMK-SKIDLILP 93
            + +  S  D  LP
Sbjct: 75 EHVVVSTSHFDFFLP 89