Miyakogusa Predicted Gene

Lj1g3v4528600.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4528600.1 Non Characterized Hit- tr|H2W188|H2W188_CAEJA
Uncharacterized protein OS=Caenorhabditis japonica
GN=,28.69,2e-18,seg,NULL; Short conserved domain in transcriptional
re,Plus-3 domain, subgroup; SUBFAMILY NOT NAMED,,CUFF.32581.1
         (638 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g089070.1 | RNA polymerase-associated RTF1-like protein | ...   633   0.0  
Medtr7g099060.1 | RNA polymerase-associated RTF1-like protein | ...   627   e-180
Medtr4g032885.1 | plus-3 domain protein | HC | chr4:11370029-113...   444   e-125

>Medtr4g089070.1 | RNA polymerase-associated RTF1-like protein | HC
           | chr4:35689130-35693421 | 20130731
          Length = 655

 Score =  633 bits (1632), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/660 (54%), Positives = 410/660 (62%), Gaps = 27/660 (4%)

Query: 1   MADLENLLLEAAGR------NRHSLPPXXXXXXXXXXXXXXXXXXXXXXXXXXXYRAGKH 54
           MADLENLLLEAAGR      NRHSLPP                           Y + K 
Sbjct: 1   MADLENLLLEAAGRTGAAGRNRHSLPPSRRRRDGSYSDGGSDSRDDDSDDELN-YASRKP 59

Query: 55  SAMQVPLKKRXX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXYKNDGDRKKLSE 106
           S  QVPLKKR                                      YK++ DR+KLSE
Sbjct: 60  SGSQVPLKKRLDPADRDDDLGSQEEADDDGRSDREGDTSDESNIGDDLYKDEDDRRKLSE 119

Query: 107 MTELQREMILSDRASKKDDKGLLVKLTQNRGDKGKTRSASRMETPP---PXXXXXXXXXX 163
           M+ELQREMILSDRASKKDDK LL K+   R +KGK     + ++PP              
Sbjct: 120 MSELQREMILSDRASKKDDKSLLGKIASKR-EKGKAIMTGK-QSPPLSSSRMRASARSAD 177

Query: 164 XXXXXXXXNELRAKRSRRLGSEAQVTVSELSRSSG----LSPKRKPFXXXXXXXXXXXXX 219
                   NELRAKR ++   EA   + E SRSSG      PKRK F             
Sbjct: 178 RSAKNEALNELRAKRLKQQDPEAHRRLREASRSSGPRNFSPPKRKSFTSANLSSSSHSDS 237

Query: 220 XXXXXXXXXXXXXXXXXXXXXXXXXXXFG-GPSFEDIKEITIPRSKLAKWFMEPFFEELI 278
                                         G SF+DIKEITI RSKLAKWFMEPFFEELI
Sbjct: 238 ESRSHSDDEGSTGDGGIADSDDDRALSGSEGLSFQDIKEITIRRSKLAKWFMEPFFEELI 297

Query: 279 VGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRLYKFENRSTYKYLNVVWGNETSAARWQ 338
           VGCFVRVGIGRSK+GPIYRLCMVKNVD+SDPDR YK EN++TYKYLNVVWGNE+SAARWQ
Sbjct: 298 VGCFVRVGIGRSKTGPIYRLCMVKNVDSSDPDRQYKLENKTTYKYLNVVWGNESSAARWQ 357

Query: 339 MAMVSDSAPHEEEFKQWVKEVERSGGHMLMKKDVLEKKQDIQKINSFVYSAATVKQMLQE 398
           MAM+SDS P EEE+KQWVKEVERSGG M  K+DVL+KKQ I KI +FVYSAATVKQM+QE
Sbjct: 358 MAMISDSPPLEEEYKQWVKEVERSGGRMPSKQDVLDKKQAINKIITFVYSAATVKQMIQE 417

Query: 399 KKSASSRRINVAAEKDRLRWEMELAQSKHDEAAVERIKTRLEELEASRKAQEKDAKALRL 458
           KKSASSR +N+AAEKDRLR ++E AQ K+D+A VERIK RL ELEASR A+ KDAKAL+L
Sbjct: 418 KKSASSRPLNIAAEKDRLRSDLERAQGKNDDAEVERIKARLLELEASRHAKVKDAKALKL 477

Query: 459 SEMNRKNRFENFKNASQLKRANMDLKAGEAGYDPFSRRWTRSRNYYVSKPGEEXXXXXXX 518
           +EMNRKNR ENFKNAS+L R    LK G+AGYDPFSRRWTRSRNYYV+ P E+       
Sbjct: 478 AEMNRKNRVENFKNASEL-RPLTGLKEGDAGYDPFSRRWTRSRNYYVATPSEK-AAALNN 535

Query: 519 XXXXXXXXXXXKGTKAAVVVETGMVXXXXXXXXXXXXGKLVDTSAPVDQGTESNELHNFE 578
                       GT   V  E+G V            GKLVDTSAPVDQGTESN LHNFE
Sbjct: 536 NTVGLVSDAGANGTGVPVTAESGAVATAIALEAAADAGKLVDTSAPVDQGTESNTLHNFE 595

Query: 579 LPISLSALQKFGGAKGVYAAFMARKQRIEAVAGLQVPENDGKVHPLTLTVSDYKRRRGLL 638
           LP+SL+ L K+GGA+G  A FMARKQRIE+  G ++ ENDG+ H LTL+V DYKRRRGLL
Sbjct: 596 LPVSLALLHKYGGAQGAQAGFMARKQRIESTVGFKLSENDGRRHVLTLSVGDYKRRRGLL 655


>Medtr7g099060.1 | RNA polymerase-associated RTF1-like protein | HC
           | chr7:39696028-39698424 | 20130731
          Length = 624

 Score =  627 bits (1618), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 342/551 (62%), Positives = 385/551 (69%), Gaps = 19/551 (3%)

Query: 95  YKNDGDRKKLSEMTELQREMILSDRASKKDDKGLLVKLTQNRGDKGKTRSASRMETPP-- 152
           YK++ DRKKLSEMTELQREMILSDRA+KKDDK +L K+   R +KG   + SR ETPP  
Sbjct: 86  YKDEDDRKKLSEMTELQREMILSDRAAKKDDKDILSKIASKR-EKG---NVSRRETPPLP 141

Query: 153 --PXXXXXXXXXXXXXXXXXXNELRAKRSRRLGSEAQVTVSELSRSSG---LSPKRKPFX 207
                                NELRAKR ++   E Q  + E S+S+G   LS   KP  
Sbjct: 142 SSRMMSSTRSYDRSAAKDGALNELRAKRLKQRDPETQRELKEGSKSAGSGVLSKIGKP-N 200

Query: 208 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGGPSFEDIKEITIPRSKLAK 267
                                                  F  PSFEDI++ITIPRSKL K
Sbjct: 201 FSSSSHSESESRSRSDEDVEGLSEGEGIIDSNDDKIMPGFEKPSFEDIQDITIPRSKLTK 260

Query: 268 WFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDPDRLYKFENRSTYKYLNVV 327
           WFMEPFFEELIVGCFVRVGIGRSK+GPIYRLCMVKNVDASDPDRLYK +N++TYKYLNVV
Sbjct: 261 WFMEPFFEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASDPDRLYKLDNKTTYKYLNVV 320

Query: 328 WGNETSAARWQMAMVSDSAPHEEEFKQWVKEVERSGGHMLMKKDVLEKKQDIQKINSFVY 387
           WGNETSAARWQMAMVSDS P EEEFKQWVKEVERSGG ML + DV+EKKQ + KIN+FVY
Sbjct: 321 WGNETSAARWQMAMVSDSPPLEEEFKQWVKEVERSGGRMLKRLDVVEKKQAMLKINNFVY 380

Query: 388 SAATVKQMLQEKKSASSRRINVAAEKDRLRWEMELAQSKHDEAAVERIKTRLEELEASRK 447
           SAATVKQML+EKKS S R +NVAAEKDRL+ E+E+A+SK+D A VE+I+T+L+ELE SRK
Sbjct: 381 SAATVKQMLEEKKSISRRPLNVAAEKDRLKRELEIAESKNDAAGVEKIQTKLQELEESRK 440

Query: 448 AQEKDAKALRLSEMNRKNRFENFKNASQLKRANMDLKAGEAGYDPFSRRWTRSRNYYVSK 507
           ++EKDAKALRLSEMNRKNR ENFKNAS LK  N  LKAGEAGYDPFSRRWTRSRNYY SK
Sbjct: 441 SREKDAKALRLSEMNRKNRVENFKNASDLKPVNKALKAGEAGYDPFSRRWTRSRNYYNSK 500

Query: 508 PGEEXXXXXXXXXXXXXXXXXXKGTKAAVVVETGMVXXXXXXXXXXXXGKLVDTSAPVDQ 567
           P EE                   G   +  +  GM             GKLVDT APVD+
Sbjct: 501 PAEEATAGNNTSGGAV-------GDGGSNGIGAGMAATTEALEAAAGAGKLVDTRAPVDE 553

Query: 568 GTESNELHNFELPISLSALQKFGGAKGVYAAFMARKQRIEAVAGLQVPENDGKVHPLTLT 627
           GTESN LH+FELPISL+ LQKFGGAKGV A FMA+KQRIE V G +VPENDG+ H LTLT
Sbjct: 554 GTESNVLHDFELPISLAMLQKFGGAKGVQAGFMAKKQRIEEVVGFRVPENDGRRHQLTLT 613

Query: 628 VSDYKRRRGLL 638
           VSDYKRRRGLL
Sbjct: 614 VSDYKRRRGLL 624


>Medtr4g032885.1 | plus-3 domain protein | HC |
           chr4:11370029-11368086 | 20130731
          Length = 647

 Score =  444 bits (1143), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/391 (57%), Positives = 284/391 (72%), Gaps = 16/391 (4%)

Query: 250 PSFEDIKEITIPRSKLAKWFMEPFFEELIVGCFVRVGIGRSKSGPIYRLCMVKNVDASDP 309
           P+FEDIKEITI RS+L KW  EPFFEELIVGCFVRVGIG+S++ P+YRLCMV+ V+  +P
Sbjct: 271 PTFEDIKEITIKRSRLVKWLNEPFFEELIVGCFVRVGIGKSENVPVYRLCMVQKVECGNP 330

Query: 310 DRLYKFENRSTYKYLNVVWGNETSAARWQMAMVSDSAPHEEEFKQWVKEVERSGGHMLMK 369
           ++ YK EN+ T+KYL  VWG+E SA + Q+A+VS+SAP E+EFK W++EVER+  +M  K
Sbjct: 331 NKHYKVENKVTHKYLVCVWGSENSAKKIQVAVVSESAPLEKEFKHWIREVERTCSYMPSK 390

Query: 370 KDVLEKKQDIQKINSFVYSAATVKQMLQEKKSASSRRINVAAEKDRLRWEMELAQSKHDE 429
            +++EKK+ I+K N++VYSAATVKQML+EKK+A SR +NVA EKD+L+ E ELA+SK+DE
Sbjct: 391 VNIIEKKEAIRKTNTYVYSAATVKQMLEEKKTAPSRPLNVAVEKDKLKREFELAESKNDE 450

Query: 430 AAVERIKTRLEELEASRKAQEKDAKALRLSEMNRKNRFENFKNASQLKR-ANMDLKAGEA 488
           A +ERI+T+L ELEA R+A+E + KA+RL EMNRKNR EN+KN S+ +   N +LKAGE 
Sbjct: 451 AWMERIQTKLAELEALRRARENNVKAIRLEEMNRKNRVENYKNLSEHRNMMNANLKAGEE 510

Query: 489 GYDPFSRRWTRSRNYYVSKPGEEXXXXXXXXXXXXXXXXXXKGTKAAVVVETGMVXXXXX 548
           GYDPFSRRWTRSRNYY    G+E                  K  K   +V+  +      
Sbjct: 511 GYDPFSRRWTRSRNYYNEDQGKE------------SKEEDGKEEKDDKIVD--VEATKES 556

Query: 549 XXXXXXXGKLVDTSAPVDQGTESNELHNFELPISLSALQKFG-GAKGVYAAFMARKQRIE 607
                  GKL DT APVD  TESN LH+FEL ISL+ LQKFG G +     F ARKQ+IE
Sbjct: 557 LKEAANAGKLTDTIAPVDVETESNMLHDFELQISLAELQKFGSGEEQRRNVFFARKQKIE 616

Query: 608 AVAGLQVPENDGKVHPLTLTVSDYKRRRGLL 638
           A  G Q+PENDG+ H LTLT+SDYKRR GLL
Sbjct: 617 ATIGYQIPENDGRKHHLTLTISDYKRRMGLL 647