Miyakogusa Predicted Gene

Lj1g3v4528350.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4528350.2 Non Characterized Hit- tr|D8SDC7|D8SDC7_SELML
Putative uncharacterized protein OS=Selaginella
moelle,41.09,4e-17,Coa1,Cytochrome oxidase assembly protein
1,CUFF.32558.2
         (180 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g098470.2 | cytochrome oxidase complex assembly protein | ...   289   1e-78
Medtr7g098470.1 | cytochrome oxidase complex assembly protein | ...   289   1e-78
Medtr7g098470.3 | cytochrome oxidase complex assembly protein | ...   206   1e-53

>Medtr7g098470.2 | cytochrome oxidase complex assembly protein | HC
           | chr7:39416368-39421126 | 20130731
          Length = 194

 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/179 (75%), Positives = 154/179 (86%)

Query: 1   MLAKRLGSFFKLSPKPQVSSSTRSVDEEKSKYYGRKAVQFLLITTTGGVALSALDDLAIY 60
           ML KRL SF KLSPKP  SS+ ++VD+  S  +GRKAV F+LIT TGGVALSAL+DLAIY
Sbjct: 1   MLPKRLSSFLKLSPKPHNSSAVKNVDKVPSTNFGRKAVSFVLITVTGGVALSALNDLAIY 60

Query: 61  HSCSSKAMEKVSKNQAVIDAIGEPIVKGSWYNASLAVAHKRHSVSCSFPVSGPQGTGLLQ 120
           H CSSKAME  SKNQA+IDAIGEPIVKG WYNASLAVAHKR SVSCSFPVSGP G+G+LQ
Sbjct: 61  HGCSSKAMENASKNQAIIDAIGEPIVKGPWYNASLAVAHKRQSVSCSFPVSGPLGSGVLQ 120

Query: 121 LKAVRNGDDSWSSYYLARDWDILIMDALLHVPGNEERHRTFRINISDNLPPSPACPECV 179
           LKAVRNGDD+WSS++L RDW+ILIMDALLHVPGNEE++RT RIN+S  L PS AC EC+
Sbjct: 121 LKAVRNGDDTWSSFFLPRDWNILIMDALLHVPGNEEKNRTLRINLSHKLSPSTACTECI 179


>Medtr7g098470.1 | cytochrome oxidase complex assembly protein | HC
           | chr7:39416354-39421124 | 20130731
          Length = 194

 Score =  289 bits (739), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/179 (75%), Positives = 154/179 (86%)

Query: 1   MLAKRLGSFFKLSPKPQVSSSTRSVDEEKSKYYGRKAVQFLLITTTGGVALSALDDLAIY 60
           ML KRL SF KLSPKP  SS+ ++VD+  S  +GRKAV F+LIT TGGVALSAL+DLAIY
Sbjct: 1   MLPKRLSSFLKLSPKPHNSSAVKNVDKVPSTNFGRKAVSFVLITVTGGVALSALNDLAIY 60

Query: 61  HSCSSKAMEKVSKNQAVIDAIGEPIVKGSWYNASLAVAHKRHSVSCSFPVSGPQGTGLLQ 120
           H CSSKAME  SKNQA+IDAIGEPIVKG WYNASLAVAHKR SVSCSFPVSGP G+G+LQ
Sbjct: 61  HGCSSKAMENASKNQAIIDAIGEPIVKGPWYNASLAVAHKRQSVSCSFPVSGPLGSGVLQ 120

Query: 121 LKAVRNGDDSWSSYYLARDWDILIMDALLHVPGNEERHRTFRINISDNLPPSPACPECV 179
           LKAVRNGDD+WSS++L RDW+ILIMDALLHVPGNEE++RT RIN+S  L PS AC EC+
Sbjct: 121 LKAVRNGDDTWSSFFLPRDWNILIMDALLHVPGNEEKNRTLRINLSHKLSPSTACTECI 179


>Medtr7g098470.3 | cytochrome oxidase complex assembly protein | HC
           | chr7:39416354-39421114 | 20130731
          Length = 149

 Score =  206 bits (523), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 106/179 (59%), Positives = 117/179 (65%), Gaps = 45/179 (25%)

Query: 1   MLAKRLGSFFKLSPKPQVSSSTRSVDEEKSKYYGRKAVQFLLITTTGGVALSALDDLAIY 60
           ML KRL SF KLSPKP  SS                                        
Sbjct: 1   MLPKRLSSFLKLSPKPHNSS---------------------------------------- 20

Query: 61  HSCSSKAMEKVSKNQAVIDAIGEPIVKGSWYNASLAVAHKRHSVSCSFPVSGPQGTGLLQ 120
                KAME  SKNQA+IDAIGEPIVKG WYNASLAVAHKR SVSCSFPVSGP G+G+LQ
Sbjct: 21  -----KAMENASKNQAIIDAIGEPIVKGPWYNASLAVAHKRQSVSCSFPVSGPLGSGVLQ 75

Query: 121 LKAVRNGDDSWSSYYLARDWDILIMDALLHVPGNEERHRTFRINISDNLPPSPACPECV 179
           LKAVRNGDD+WSS++L RDW+ILIMDALLHVPGNEE++RT RIN+S  L PS AC EC+
Sbjct: 76  LKAVRNGDDTWSSFFLPRDWNILIMDALLHVPGNEEKNRTLRINLSHKLSPSTACTECI 134