Miyakogusa Predicted Gene

Lj1g3v4517300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4517300.1 CUFF.32560.1
         (811 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g098430.1 | Pre-mRNA-processing factor 39 | HC | chr7:3939...  1229   0.0  
Medtr8g088050.1 | Pre-mRNA-processing factor 39, putative | HC |...   437   e-122
Medtr8g088050.2 | Pre-mRNA-processing factor 39, putative | HC |...   437   e-122
Medtr8g088050.3 | Pre-mRNA-processing factor 39, putative | HC |...   437   e-122
Medtr6g026900.2 | cleavage stimulation factor | HC | chr6:909410...    59   2e-08
Medtr6g026900.1 | cleavage stimulation factor | HC | chr6:909424...    59   2e-08

>Medtr7g098430.1 | Pre-mRNA-processing factor 39 | HC |
           chr7:39392862-39401978 | 20130731
          Length = 826

 Score = 1229 bits (3180), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/788 (80%), Positives = 666/788 (84%), Gaps = 26/788 (3%)

Query: 1   MGDSETVVXXXXXXXXXXXXXXXXXXDTVMDPVPEAGA---------ATGEASQANSAYG 51
           MGDSET+V                  +T  +PVPEAGA             A+Q NS Y 
Sbjct: 1   MGDSETMVAEASAAETYPSDGYN---NTSSNPVPEAGANVPAPAEIAGEAAAAQPNSGYA 57

Query: 52  Y---GEGNVY-ARDPNS---GQLGGTGDSKQXXXX--XXXXXXXXXXXXNSVVPEYNSTA 102
           +   G+GN Y A DPNS    Q   T +SKQ                  +++V   +S+ 
Sbjct: 58  FAYSGDGNAYTAGDPNSVLQAQFSATNESKQAAEVPNEDSSLVGKEAMDSAMVSADHSSV 117

Query: 103 NGSVVTNAAGLENGNAVDNVDGSADEKQLADGYAALSAEEDRLWNIVSANSLDFTAWTAL 162
           NGSV T   GLENGNA +NVD SADEKQL D YAALSAEEDRLWNIV+ANS DFTAWT+L
Sbjct: 118 NGSVDT--VGLENGNASENVDESADEKQLTDAYAALSAEEDRLWNIVTANSSDFTAWTSL 175

Query: 163 IEETEKVAEDNILKIRRVYDAFLGEFPLCYGYWKKYADHEARLGAVDKVVEVYERAVQGV 222
           I+ETEKVAE+NILK+RRVYDAFL EFPLCYGYWKKYADHEARLG+ DKVVEVYERAVQGV
Sbjct: 176 IDETEKVAENNILKMRRVYDAFLAEFPLCYGYWKKYADHEARLGSADKVVEVYERAVQGV 235

Query: 223 TYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWAR 282
           TYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWAR
Sbjct: 236 TYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQDWAR 295

Query: 283 LAMIYTRILENPNQQLDRYFNSFKELAGSRPLSELRTADEAAAVTGVASEATDQPLEGED 342
           LAMIYTRILENPNQQLDRYFNSFKELA +RPLSELRTADEAAAV GV SE  DQ +EGE 
Sbjct: 296 LAMIYTRILENPNQQLDRYFNSFKELASNRPLSELRTADEAAAVAGVVSEGIDQGVEGEV 355

Query: 343 RPDGAEISPKPVSAGLTEAEELEKYIAIREELYKKAKEFDSKIIGFETAIRRPYFHVRPL 402
            PDGA+ SPKP SAGLTEAEELEKYIAIREE+YKKAKEFDSKIIGFET IRRPYFHVRPL
Sbjct: 356 HPDGADNSPKPASAGLTEAEELEKYIAIREEMYKKAKEFDSKIIGFETTIRRPYFHVRPL 415

Query: 403 NIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASANMDLANN 462
           NIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEAS +MDLANN
Sbjct: 416 NIGELENWHNYLDFIEREGDLSKIVKLYERCVIACANYPEYWIRYVLCMEASESMDLANN 475

Query: 463 VLARATQVFVKRQPEIHLFCARFKEQAGDIAGARAAYQLVHTETSPGLLEAIIKHGNMEY 522
           VLARA+QVFVKRQPEIHLFCARFKEQAGDI GARAAYQLVHTE SPGLLEAII+H NME+
Sbjct: 476 VLARASQVFVKRQPEIHLFCARFKEQAGDIVGARAAYQLVHTEISPGLLEAIIRHANMEH 535

Query: 523 RLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASENAEKAREILVGGLENV 582
           RLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLAS N+EKAREILVGGLEN 
Sbjct: 536 RLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQYSRFVYLASGNSEKAREILVGGLENA 595

Query: 583 SLSKPLLEALLHFEAIQPQPKRVDMDFLESLVVKFIVPNPESPTVASAAEREELSSIFLE 642
           SLSKPLLEALLHFEAIQPQPKRVD+DFLESLVVKFI PNPE+P VASA EREELS+IFLE
Sbjct: 596 SLSKPLLEALLHFEAIQPQPKRVDIDFLESLVVKFITPNPENPGVASATEREELSNIFLE 655

Query: 643 FLNLFGDVQSIKRGEDRHAKLFLPHRSMSELKKRSAEDFLASNKTKVSRTYSVQSPAQSV 702
           FLNLFGDVQSIKR EDRHAKLFLP+R +SELKKR AEDFLAS+KTKVSR YS QSPAQSV
Sbjct: 656 FLNLFGDVQSIKRAEDRHAKLFLPNRGLSELKKRHAEDFLASDKTKVSRAYSAQSPAQSV 715

Query: 703 MGAYPNAPNQWTNYGAQPQTWPAVPQIQGQQWPAGYNQQ---ASYGTYPGYGGNYANPQL 759
            GAYPN PNQW NYG QPQTWPA  Q QGQQWPAGY QQ   ASYG Y GYGGNYANPQL
Sbjct: 716 AGAYPNGPNQWPNYGVQPQTWPATTQAQGQQWPAGYTQQQAAASYGAYAGYGGNYANPQL 775

Query: 760 PTSVPQNT 767
           P SVPQ+T
Sbjct: 776 PASVPQST 783


>Medtr8g088050.1 | Pre-mRNA-processing factor 39, putative | HC |
           chr8:36447242-36458261 | 20130731
          Length = 1188

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/564 (41%), Positives = 336/564 (59%), Gaps = 15/564 (2%)

Query: 145 LWNIVSANSLDFTAWTALIEETEKVAEDNILKIRRVYDAFLGEFPLCYGYWKKYADHEAR 204
           L  ++S  SLDF  W +LI + EK+  DN+ KI  VY  FL EFPLC+GYW+KYA H  +
Sbjct: 18  LEEVISKGSLDFDEWVSLIADIEKIYPDNVEKICVVYKHFLSEFPLCHGYWRKYAAHMTQ 77

Query: 205 LGAVDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSF 264
           L  +DKVVEV+E+AV   TYSV MW+ YC F +S++ D   +RRLF+R +++VG DYL  
Sbjct: 78  LSTMDKVVEVFEQAVSAATYSVGMWVDYCSFGMSSFEDASDIRRLFKRAISFVGKDYLCH 137

Query: 265 PLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFNSFKELAGSRPLSELRTADEAA 324
            LWD+YI +E+ QQ W  LA IY + L+ P ++L +Y++SFK+L     L E  T+ E++
Sbjct: 138 TLWDRYIHFEFSQQQWTCLAHIYIQTLKFPTKKLHQYYDSFKKLLTF--LEEGITSRESS 195

Query: 325 AVTGVASEATDQPLEGEDRPDGAEI-------SPKPVSAGLTEAEELEKYIAIREELYKK 377
                +    D  +      D  EI          PV  GLT +  L+KY  I E+LY  
Sbjct: 196 PKESQSEPCLDGEIPMTMCRDDDEIYCVIKDMVDSPV--GLTSSTALKKYRIIGEQLYHN 253

Query: 378 AKEFDSKIIGFETAIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIAC 437
           A E  SKI  FE  I+R YF  RPL+  +L+NWH YLDFIE  GD    VKLYERC+I C
Sbjct: 254 ACELYSKISSFEANIQRYYFDFRPLDANQLQNWHAYLDFIELHGDFDWAVKLYERCLIVC 313

Query: 438 ANYPEYWIRYVLCMEASANMDLANNVLARATQVFVKRQPEIHLFCARFKEQAGDIAGARA 497
           ANYP+YW+RY   MEA    ++AN  L RAT++++K  P IHLF ARFKEQ GD+  ARA
Sbjct: 314 ANYPDYWMRYADFMEAKGGREIANYSLDRATEIYLKSVPAIHLFNARFKEQIGDVLAARA 373

Query: 498 AYQLVHTETSPGLLEAIIKHGNMEYRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQY 557
           AY     ET    +E +I   NME RLG +E AFS+Y++A+ I   +E    LP+L+  +
Sbjct: 374 AYIHRCKETDSDFVENVISKANMEKRLGNMESAFSIYKEALEIAAAEEKQPALPILYVHF 433

Query: 558 SRFVYLASENAEKAREILVGGLENVSLSKPLLEALLHFEAIQPQPKRVDMDFLESLVVKF 617
           SR  ++++ + + AR +L+ G+  +  +K LLE L+ F  +    K +D   L+S++   
Sbjct: 434 SRLKFMSTNDVDAARVVLIDGIRTLPQNKLLLEELMKFSMMHGGAKHIDE--LDSIIAGA 491

Query: 618 IVPNPESPTVASAAEREELSSIFLEFLNLFGDVQSIKRGEDRHAKLFLPHRSMSELKKRS 677
           I P        SA + E++S+++LEF++  G +  ++R  +RH +L  P  +  +L+++S
Sbjct: 492 ISPRANGSQGLSAEDAEDISNLYLEFVDYCGTIHDVRRALNRHIRL-CPGSARIDLRQQS 550

Query: 678 AEDFLASNKTKVSR-TYSVQSPAQ 700
            +     N  K  R   SV  P Q
Sbjct: 551 IKSKRPLNLIKDKREEISVAMPNQ 574


>Medtr8g088050.2 | Pre-mRNA-processing factor 39, putative | HC |
           chr8:36447242-36458284 | 20130731
          Length = 1187

 Score =  437 bits (1125), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/564 (41%), Positives = 336/564 (59%), Gaps = 15/564 (2%)

Query: 145 LWNIVSANSLDFTAWTALIEETEKVAEDNILKIRRVYDAFLGEFPLCYGYWKKYADHEAR 204
           L  ++S  SLDF  W +LI + EK+  DN+ KI  VY  FL EFPLC+GYW+KYA H  +
Sbjct: 18  LEEVISKGSLDFDEWVSLIADIEKIYPDNVEKICVVYKHFLSEFPLCHGYWRKYAAHMTQ 77

Query: 205 LGAVDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSF 264
           L  +DKVVEV+E+AV   TYSV MW+ YC F +S++ D   +RRLF+R +++VG DYL  
Sbjct: 78  LSTMDKVVEVFEQAVSAATYSVGMWVDYCSFGMSSFEDASDIRRLFKRAISFVGKDYLCH 137

Query: 265 PLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFNSFKELAGSRPLSELRTADEAA 324
            LWD+YI +E+ QQ W  LA IY + L+ P ++L +Y++SFK+L     L E  T+ E++
Sbjct: 138 TLWDRYIHFEFSQQQWTCLAHIYIQTLKFPTKKLHQYYDSFKKLLTF--LEEGITSRESS 195

Query: 325 AVTGVASEATDQPLEGEDRPDGAEI-------SPKPVSAGLTEAEELEKYIAIREELYKK 377
                +    D  +      D  EI          PV  GLT +  L+KY  I E+LY  
Sbjct: 196 PKESQSEPCLDGEIPMTMCRDDDEIYCVIKDMVDSPV--GLTSSTALKKYRIIGEQLYHN 253

Query: 378 AKEFDSKIIGFETAIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIAC 437
           A E  SKI  FE  I+R YF  RPL+  +L+NWH YLDFIE  GD    VKLYERC+I C
Sbjct: 254 ACELYSKISSFEANIQRYYFDFRPLDANQLQNWHAYLDFIELHGDFDWAVKLYERCLIVC 313

Query: 438 ANYPEYWIRYVLCMEASANMDLANNVLARATQVFVKRQPEIHLFCARFKEQAGDIAGARA 497
           ANYP+YW+RY   MEA    ++AN  L RAT++++K  P IHLF ARFKEQ GD+  ARA
Sbjct: 314 ANYPDYWMRYADFMEAKGGREIANYSLDRATEIYLKSVPAIHLFNARFKEQIGDVLAARA 373

Query: 498 AYQLVHTETSPGLLEAIIKHGNMEYRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQY 557
           AY     ET    +E +I   NME RLG +E AFS+Y++A+ I   +E    LP+L+  +
Sbjct: 374 AYIHRCKETDSDFVENVISKANMEKRLGNMESAFSIYKEALEIAAAEEKQPALPILYVHF 433

Query: 558 SRFVYLASENAEKAREILVGGLENVSLSKPLLEALLHFEAIQPQPKRVDMDFLESLVVKF 617
           SR  ++++ + + AR +L+ G+  +  +K LLE L+ F  +    K +D   L+S++   
Sbjct: 434 SRLKFMSTNDVDAARVVLIDGIRTLPQNKLLLEELMKFSMMHGGAKHIDE--LDSIIAGA 491

Query: 618 IVPNPESPTVASAAEREELSSIFLEFLNLFGDVQSIKRGEDRHAKLFLPHRSMSELKKRS 677
           I P        SA + E++S+++LEF++  G +  ++R  +RH +L  P  +  +L+++S
Sbjct: 492 ISPRANGSQGLSAEDAEDISNLYLEFVDYCGTIHDVRRALNRHIRL-CPGSARIDLRQQS 550

Query: 678 AEDFLASNKTKVSR-TYSVQSPAQ 700
            +     N  K  R   SV  P Q
Sbjct: 551 IKSKRPLNLIKDKREEISVAMPNQ 574


>Medtr8g088050.3 | Pre-mRNA-processing factor 39, putative | HC |
           chr8:36447242-36458261 | 20130731
          Length = 1182

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/564 (41%), Positives = 336/564 (59%), Gaps = 15/564 (2%)

Query: 145 LWNIVSANSLDFTAWTALIEETEKVAEDNILKIRRVYDAFLGEFPLCYGYWKKYADHEAR 204
           L  ++S  SLDF  W +LI + EK+  DN+ KI  VY  FL EFPLC+GYW+KYA H  +
Sbjct: 18  LEEVISKGSLDFDEWVSLIADIEKIYPDNVEKICVVYKHFLSEFPLCHGYWRKYAAHMTQ 77

Query: 205 LGAVDKVVEVYERAVQGVTYSVDMWLHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSF 264
           L  +DKVVEV+E+AV   TYSV MW+ YC F +S++ D   +RRLF+R +++VG DYL  
Sbjct: 78  LSTMDKVVEVFEQAVSAATYSVGMWVDYCSFGMSSFEDASDIRRLFKRAISFVGKDYLCH 137

Query: 265 PLWDKYIEYEYMQQDWARLAMIYTRILENPNQQLDRYFNSFKELAGSRPLSELRTADEAA 324
            LWD+YI +E+ QQ W  LA IY + L+ P ++L +Y++SFK+L     L E  T+ E++
Sbjct: 138 TLWDRYIHFEFSQQQWTCLAHIYIQTLKFPTKKLHQYYDSFKKLLTF--LEEGITSRESS 195

Query: 325 AVTGVASEATDQPLEGEDRPDGAEI-------SPKPVSAGLTEAEELEKYIAIREELYKK 377
                +    D  +      D  EI          PV  GLT +  L+KY  I E+LY  
Sbjct: 196 PKESQSEPCLDGEIPMTMCRDDDEIYCVIKDMVDSPV--GLTSSTALKKYRIIGEQLYHN 253

Query: 378 AKEFDSKIIGFETAIRRPYFHVRPLNIGELENWHNYLDFIEREGDLSKIVKLYERCVIAC 437
           A E  SKI  FE  I+R YF  RPL+  +L+NWH YLDFIE  GD    VKLYERC+I C
Sbjct: 254 ACELYSKISSFEANIQRYYFDFRPLDANQLQNWHAYLDFIELHGDFDWAVKLYERCLIVC 313

Query: 438 ANYPEYWIRYVLCMEASANMDLANNVLARATQVFVKRQPEIHLFCARFKEQAGDIAGARA 497
           ANYP+YW+RY   MEA    ++AN  L RAT++++K  P IHLF ARFKEQ GD+  ARA
Sbjct: 314 ANYPDYWMRYADFMEAKGGREIANYSLDRATEIYLKSVPAIHLFNARFKEQIGDVLAARA 373

Query: 498 AYQLVHTETSPGLLEAIIKHGNMEYRLGKLEDAFSLYEQAIAIEKGKEHSQTLPMLFAQY 557
           AY     ET    +E +I   NME RLG +E AFS+Y++A+ I   +E    LP+L+  +
Sbjct: 374 AYIHRCKETDSDFVENVISKANMEKRLGNMESAFSIYKEALEIAAAEEKQPALPILYVHF 433

Query: 558 SRFVYLASENAEKAREILVGGLENVSLSKPLLEALLHFEAIQPQPKRVDMDFLESLVVKF 617
           SR  ++++ + + AR +L+ G+  +  +K LLE L+ F  +    K +D   L+S++   
Sbjct: 434 SRLKFMSTNDVDAARVVLIDGIRTLPQNKLLLEELMKFSMMHGGAKHIDE--LDSIIAGA 491

Query: 618 IVPNPESPTVASAAEREELSSIFLEFLNLFGDVQSIKRGEDRHAKLFLPHRSMSELKKRS 677
           I P        SA + E++S+++LEF++  G +  ++R  +RH +L  P  +  +L+++S
Sbjct: 492 ISPRANGSQGLSAEDAEDISNLYLEFVDYCGTIHDVRRALNRHIRL-CPGSARIDLRQQS 550

Query: 678 AEDFLASNKTKVSR-TYSVQSPAQ 700
            +     N  K  R   SV  P Q
Sbjct: 551 IKSKRPLNLIKDKREEISVAMPNQ 574


>Medtr6g026900.2 | cleavage stimulation factor | HC |
           chr6:9094104-9083521 | 20130731
          Length = 721

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/531 (18%), Positives = 201/531 (37%), Gaps = 96/531 (18%)

Query: 163 IEETEKVAED----NILKIRRVYDAFLGEFPLCYGYWKKYADHEARLGAVDKVVEVYERA 218
           +E  EK+A +    +I +   +Y+  L  +P    +WK+Y +    +   D + +++ R 
Sbjct: 7   VESAEKLANEAQALSIAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRC 66

Query: 219 VQGVTYSVDMWLHYCIFAISTYGDP------DTVRRLFERGLAYVGTDYLSFPLWDKYIE 272
           +      V +W  Y  F I    D       +  ++ FE  L+YVG+D  S P+W +YI 
Sbjct: 67  LLNCL-QVPLWRCYIRF-IRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIA 124

Query: 273 Y------EYMQQDWARLAM---IYTRILENPNQQLDRYFNSFKELAGSRPLSELRTADEA 323
           +       + Q++  R+ +   +Y R +  P   +++ +  +     S            
Sbjct: 125 FLKSLPAAHPQEETHRMTVVRKVYQRAIITPTHHIEQLWKDYDSFESS------------ 172

Query: 324 AAVTGVASEATDQPLEGEDRPDGAEISPKPVSAGLTEAEELEKYIAIREELYKKAKEFDS 383
                  S+   + L  E +P                     KY + R  +Y++ K+F  
Sbjct: 173 ------VSQKLAKGLISEYQP---------------------KYNSAR-AVYRERKKFFD 204

Query: 384 KIIGFETAIRRPYFHVRPLNIGELENWHNYLDF-------IEREGDLSKIVKLYERCVIA 436
           +I     A+     H   +   +  +W   L F       I+      +++  YE+C++ 
Sbjct: 205 EIDWNMLAVPPTGSHKEEM---QWMSWKKLLSFEKGNPQRIDIASSNKRVIFTYEQCLMY 261

Query: 437 CANYPEYWIRYVLCMEASANMDLANNVLARATQVFVKRQPEIHLF---CARFKEQAGDIA 493
             +YP+ W  Y      + ++D A  V  R+    +K  P+  +     A  +E  G I 
Sbjct: 262 LYHYPDVWYDYATWHAKAGSIDAAIKVFQRS----LKALPDSEMLRYAYAELEESRGAIQ 317

Query: 494 GARAAYQLVHTETSPGLLEAIIKHGNMEYRLGKLEDAFSLYEQAIAIEKGKEHSQTLPML 553
            A+  Y+ +  ++      A I+      R   +E A   +  A        H      +
Sbjct: 318 AAKKIYENLLGDSENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYH------V 371

Query: 554 FAQYSRFVYLASENAEKAREILVGGLENVSLSKPLLEALLHFEAIQPQPKRVDMDFLESL 613
           +  Y+   +   ++ + A  +   GL++      + E +   E      +  D   + +L
Sbjct: 372 YVAYASVAFCLDKDPKMAHNVFEAGLKHF-----MHEPVYILEYADFLIRLNDDQNIRAL 426

Query: 614 VVKFIVPNPESPTVASAAEREELSSIFLEFLNLFGDVQSIKRGEDRHAKLF 664
             + +   P   +V       E+   F++F   +GD+ S+ + E R  + F
Sbjct: 427 FERALSSLPLEDSV-------EVWKRFVKFEQTYGDLASMLKVEQRRKEAF 470


>Medtr6g026900.1 | cleavage stimulation factor | HC |
           chr6:9094247-9083521 | 20130731
          Length = 721

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 99/531 (18%), Positives = 201/531 (37%), Gaps = 96/531 (18%)

Query: 163 IEETEKVAED----NILKIRRVYDAFLGEFPLCYGYWKKYADHEARLGAVDKVVEVYERA 218
           +E  EK+A +    +I +   +Y+  L  +P    +WK+Y +    +   D + +++ R 
Sbjct: 7   VESAEKLANEAQALSIAEATPIYEQLLQLYPTAAKFWKQYVEAHMAVNNDDAIKQIFSRC 66

Query: 219 VQGVTYSVDMWLHYCIFAISTYGDP------DTVRRLFERGLAYVGTDYLSFPLWDKYIE 272
           +      V +W  Y  F I    D       +  ++ FE  L+YVG+D  S P+W +YI 
Sbjct: 67  LLNCL-QVPLWRCYIRF-IRKVNDKKGAEGQEETKKAFEFMLSYVGSDIASGPVWMEYIA 124

Query: 273 Y------EYMQQDWARLAM---IYTRILENPNQQLDRYFNSFKELAGSRPLSELRTADEA 323
           +       + Q++  R+ +   +Y R +  P   +++ +  +     S            
Sbjct: 125 FLKSLPAAHPQEETHRMTVVRKVYQRAIITPTHHIEQLWKDYDSFESS------------ 172

Query: 324 AAVTGVASEATDQPLEGEDRPDGAEISPKPVSAGLTEAEELEKYIAIREELYKKAKEFDS 383
                  S+   + L  E +P                     KY + R  +Y++ K+F  
Sbjct: 173 ------VSQKLAKGLISEYQP---------------------KYNSAR-AVYRERKKFFD 204

Query: 384 KIIGFETAIRRPYFHVRPLNIGELENWHNYLDF-------IEREGDLSKIVKLYERCVIA 436
           +I     A+     H   +   +  +W   L F       I+      +++  YE+C++ 
Sbjct: 205 EIDWNMLAVPPTGSHKEEM---QWMSWKKLLSFEKGNPQRIDIASSNKRVIFTYEQCLMY 261

Query: 437 CANYPEYWIRYVLCMEASANMDLANNVLARATQVFVKRQPEIHLF---CARFKEQAGDIA 493
             +YP+ W  Y      + ++D A  V  R+    +K  P+  +     A  +E  G I 
Sbjct: 262 LYHYPDVWYDYATWHAKAGSIDAAIKVFQRS----LKALPDSEMLRYAYAELEESRGAIQ 317

Query: 494 GARAAYQLVHTETSPGLLEAIIKHGNMEYRLGKLEDAFSLYEQAIAIEKGKEHSQTLPML 553
            A+  Y+ +  ++      A I+      R   +E A   +  A        H      +
Sbjct: 318 AAKKIYENLLGDSENATALAHIQFIRFLRRTEGVEPARKYFLDARKSPSCTYH------V 371

Query: 554 FAQYSRFVYLASENAEKAREILVGGLENVSLSKPLLEALLHFEAIQPQPKRVDMDFLESL 613
           +  Y+   +   ++ + A  +   GL++      + E +   E      +  D   + +L
Sbjct: 372 YVAYASVAFCLDKDPKMAHNVFEAGLKHF-----MHEPVYILEYADFLIRLNDDQNIRAL 426

Query: 614 VVKFIVPNPESPTVASAAEREELSSIFLEFLNLFGDVQSIKRGEDRHAKLF 664
             + +   P   +V       E+   F++F   +GD+ S+ + E R  + F
Sbjct: 427 FERALSSLPLEDSV-------EVWKRFVKFEQTYGDLASMLKVEQRRKEAF 470