Miyakogusa Predicted Gene

Lj1g3v4516120.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4516120.1 CUFF.32575.1
         (140 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g098290.1 | 60S ribosomal L23-like protein | HC | chr7:393...   278   1e-75
Medtr1g069585.1 | 60S ribosomal L23-like protein | HC | chr1:302...   278   1e-75
Medtr7g098290.2 | 60S ribosomal L23-like protein | HC | chr7:393...   249   7e-67
Medtr1g026090.1 | 60S ribosomal L23-like protein | LC | chr1:842...   212   1e-55
Medtr5g054560.1 | 60S ribosomal L23-like protein | HC | chr5:224...   164   3e-41
Medtr5g464620.1 | 60S ribosomal L23-like protein | LC | chr5:268...    92   2e-19
Medtr2g070580.1 | ribosomal protein L14p/L23e | LC | chr2:297577...    83   6e-17
Medtr1779s0020.1 | 50S ribosomal protein L14p | HC | scaffold177...    70   7e-13
Medtr4g051390.1 | 50S ribosomal protein L14p | HC | chr4:1834305...    70   8e-13
Medtr0002s0780.1 | 50S ribosomal protein L16 | HC | scaffold0002...    68   2e-12
Medtr2g087550.1 | 50S ribosomal protein L14 | HC | chr2:36840828...    68   3e-12
Medtr4g017930.1 | 60S ribosomal protein L23, putative | LC | chr...    59   2e-09
Medtr4g066540.1 | 60S ribosomal protein L23, putative | LC | chr...    55   2e-08

>Medtr7g098290.1 | 60S ribosomal L23-like protein | HC |
           chr7:39328259-39326901 | 20130731
          Length = 140

 Score =  278 bits (711), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/140 (98%), Positives = 138/140 (98%)

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSAC GDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACAGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 140
           I KECADLWPRIASAANAIV
Sbjct: 121 IAKECADLWPRIASAANAIV 140


>Medtr1g069585.1 | 60S ribosomal L23-like protein | HC |
           chr1:30233917-30235880 | 20130731
          Length = 140

 Score =  278 bits (711), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 138/140 (98%), Positives = 138/140 (98%)

Query: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
           MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSAC GDM
Sbjct: 1   MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACAGDM 60

Query: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
           VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP
Sbjct: 61  VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120

Query: 121 IGKECADLWPRIASAANAIV 140
           I KECADLWPRIASAANAIV
Sbjct: 121 IAKECADLWPRIASAANAIV 140


>Medtr7g098290.2 | 60S ribosomal L23-like protein | HC |
           chr7:39328210-39327083 | 20130731
          Length = 125

 Score =  249 bits (635), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 123/125 (98%), Positives = 123/125 (98%)

Query: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75
           MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSAC GDMVMATVKKGKPDLRKK
Sbjct: 1   MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACAGDMVMATVKKGKPDLRKK 60

Query: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135
           VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPI KECADLWPRIASA
Sbjct: 61  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIAKECADLWPRIASA 120

Query: 136 ANAIV 140
           ANAIV
Sbjct: 121 ANAIV 125


>Medtr1g026090.1 | 60S ribosomal L23-like protein | LC |
           chr1:8424552-8425507 | 20130731
          Length = 186

 Score =  212 bits (539), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/135 (81%), Positives = 112/135 (82%), Gaps = 15/135 (11%)

Query: 2   SKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMV 61
           SK G   SAGNKFRMSLGLPVAATVNC DNT AKN+YIISVKGIKGRLNRLPSACVGDMV
Sbjct: 42  SKVGVVPSAGNKFRMSLGLPVAATVNCVDNTEAKNMYIISVKGIKGRLNRLPSACVGDMV 101

Query: 62  MATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPI 121
                          LPAVIVRQ KPWR KDGVFMYFEDNAGVIVNPKGEMKGSAITGPI
Sbjct: 102 ---------------LPAVIVRQCKPWRPKDGVFMYFEDNAGVIVNPKGEMKGSAITGPI 146

Query: 122 GKECADLWPRIASAA 136
           GKECADLWPRIA+AA
Sbjct: 147 GKECADLWPRIANAA 161


>Medtr5g054560.1 | 60S ribosomal L23-like protein | HC |
           chr5:22476304-22475923 | 20130731
          Length = 101

 Score =  164 bits (414), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 91/125 (72%), Gaps = 24/125 (19%)

Query: 16  MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK 75
           MSLGL VAATVN ADN G  +L+IISVKGIKGRLNRLPSACVGDM               
Sbjct: 1   MSLGLSVAATVNSADNIGGNSLHIISVKGIKGRLNRLPSACVGDM--------------- 45

Query: 76  VLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASA 135
                    RKPWR+ D VFMYF+DNAGVIVNPKGEMKGSAITGPIG ECA+LWP IASA
Sbjct: 46  ---------RKPWRQNDCVFMYFKDNAGVIVNPKGEMKGSAITGPIGNECAELWPMIASA 96

Query: 136 ANAIV 140
           AN IV
Sbjct: 97  ANTIV 101


>Medtr5g464620.1 | 60S ribosomal L23-like protein | LC |
          chr5:26841676-26842358 | 20130731
          Length = 73

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/49 (89%), Positives = 46/49 (93%)

Query: 14 FRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVM 62
           RMSLGL VAATVNCADNTG KNL+IISVKGIKGRLNRLPSACVGDMV+
Sbjct: 16 IRMSLGLSVAATVNCADNTGGKNLHIISVKGIKGRLNRLPSACVGDMVI 64


>Medtr2g070580.1 | ribosomal protein L14p/L23e | LC |
           chr2:29757748-29759277 | 20130731
          Length = 127

 Score = 83.2 bits (204), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/41 (92%), Positives = 39/41 (95%)

Query: 100 DNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
           +NAGVIVNPKGEMKGS ITGPIGKECADLWPRIASAAN IV
Sbjct: 87  NNAGVIVNPKGEMKGSVITGPIGKECADLWPRIASAANVIV 127


>Medtr1779s0020.1 | 50S ribosomal protein L14p | HC |
           scaffold1779:662-1030 | 20130731
          Length = 122

 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 68/115 (59%), Gaps = 8/115 (6%)

Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPAVIV 82
           +N ADN+GA+ L  I V G   R      A +GD+++A +K+  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRVIGASNR----RYAHIGDVIVAVIKEAVPNTPLERSEVIRAVIV 63

Query: 83  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 136
           R  K  +R +G+ + ++DNA V+++ +G  KG+ I G I +E   L + +I S A
Sbjct: 64  RTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLA 118


>Medtr4g051390.1 | 50S ribosomal protein L14p | HC |
           chr4:18343055-18342544 | 20130731
          Length = 122

 Score = 69.7 bits (169), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/115 (36%), Positives = 67/115 (58%), Gaps = 8/115 (6%)

Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVLPAVIV 82
           +N ADN+GA+ L  I + G   R      A +GD+V+A +KK  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRIIGASNR----RYAYIGDIVVAVIKKAVPNSSLERSEVIRAVIV 63

Query: 83  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAA 136
           R  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E   L + +I S A
Sbjct: 64  RTCKELKRSNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQLNFTKIVSLA 118


>Medtr0002s0780.1 | 50S ribosomal protein L16 | HC |
           scaffold0002:278350-277415 | 20130731
          Length = 250

 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 7/122 (5%)

Query: 23  AATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVLPA 79
           A ++   DN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ A
Sbjct: 132 AISIAATDNSGARKLMCIRVIGAAGNQR---YARIGDVIVAVIKDALPQMPLERSEVIRA 188

Query: 80  VIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANA 138
           VIVR  K ++ +DG+ + ++DNA VI++ KG  KG+ + G I +E  +L + +I S A  
Sbjct: 189 VIVRTCKEFKCEDGIIIRYDDNAAVIIDQKGNPKGTRVFGAIAEELRELNFTKIVSLAPE 248

Query: 139 IV 140
           ++
Sbjct: 249 VL 250


>Medtr2g087550.1 | 50S ribosomal protein L14 | HC |
           chr2:36840828-36840103 | 20130731
          Length = 209

 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 7/106 (6%)

Query: 26  VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVLPAVIV 82
           +N ADN+GA+ L  I + G   R      A +GD+V+A +KK  P+    R +V+ AVIV
Sbjct: 8   LNVADNSGARELMCIRIIGASNR----RYAYIGDIVVAVIKKAVPNSSLERSEVIRAVIV 63

Query: 83  RQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 128
           R  K  +R +G+ + ++DNA V+++ +G  KG+ I   I +E   L
Sbjct: 64  RTCKELKRSNGIIIKYDDNAAVLIDKEGNPKGTRIFSAIARELRQL 109


>Medtr4g017930.1 | 60S ribosomal protein L23, putative | LC |
           chr4:5690472-5689273 | 20130731
          Length = 122

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 31/36 (86%), Gaps = 2/36 (5%)

Query: 104 VIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 139
           +IVN   E+  SAITGPIGKECADLWPRIASAANAI
Sbjct: 13  IIVN--HEVDCSAITGPIGKECADLWPRIASAANAI 46


>Medtr4g066540.1 | 60S ribosomal protein L23, putative | LC |
           chr4:25152671-25154206 | 20130731
          Length = 90

 Score = 55.5 bits (132), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 31/40 (77%), Gaps = 4/40 (10%)

Query: 100 DNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 139
           +N+GVIVNPKGEMK   I     KE ADLWPRIASAANAI
Sbjct: 54  NNSGVIVNPKGEMKDQLI----DKEYADLWPRIASAANAI 89