Miyakogusa Predicted Gene

Lj1g3v4483920.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4483920.1 Non Characterized Hit- tr|B9SWI6|B9SWI6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,39.52,4e-18,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.32493.1
         (191 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g093000.1 | transcription termination factor family protei...   133   1e-31
Medtr5g084810.1 | transcription termination factor family protei...    55   5e-08

>Medtr7g093000.1 | transcription termination factor family protein |
           HC | chr7:36920060-36916504 | 20130731
          Length = 571

 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/192 (46%), Positives = 125/192 (65%), Gaps = 18/192 (9%)

Query: 8   KLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGG------GWVE 61
           K+KAYE+LG++AS LV+AVA SP +LVGDV+++FVKVVE LK + VAKGG      GW++
Sbjct: 183 KIKAYEDLGISASILVNAVAVSPGILVGDVNVEFVKVVEMLK-NIVAKGGDGDFDSGWIQ 241

Query: 62  EHFLDGGVYCNWGMVLRLLCLLSEVGFREGHIDDELIRDRPCVVFHESGGRALSLIAFLS 121
            H+LD  V CNWG++L LLCLLS+ GF E  +  E+I   PC+VF ESGG+ LS+I FL 
Sbjct: 242 WHYLD-EVSCNWGLMLELLCLLSDTGFSEKQL-AEIIHRSPCIVFEESGGKTLSMIGFLV 299

Query: 122 KFGLSVDRIGNSSWYQNSRSLPYRFFTYYNCKQTFLRTITKI-----SISILFTEHITFS 176
           KFGLSV++I    + +  + L  +FF      +  L+ +T+I      I  +F  H   +
Sbjct: 300 KFGLSVNQIA-LLFLEFPQILMVKFFANL---RVCLQLLTEIEMEAKEIGKIFQSHTILA 355

Query: 177 ILHLTKTSKPLL 188
             +  KT+K LL
Sbjct: 356 GSNTLKTTKSLL 367


>Medtr5g084810.1 | transcription termination factor family protein |
           HC | chr5:36606004-36603602 | 20130731
          Length = 592

 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 7/119 (5%)

Query: 5   LSLKLKAYEELGVAASTLVDAVAASPSLLVGDVDLDFVKVVEKLKEHFVAKGGGWVEEHF 64
           L  K +AYE+LG++ S+L+      P LLVGDVD +FV V++ LK   +     W     
Sbjct: 203 LEKKFQAYEDLGLSKSSLIKLFVCCPLLLVGDVDSEFVVVLDWLKR--IGIESKWFVNCM 260

Query: 65  LDGGVYCNWGMVLRLLCLLSEVGFREGHIDDELIRDRPCVVFHESGGRALSLIAFLSKF 123
                Y +W  ++  L    +VG+ E H+ D L +  P ++  E  GR L L  FL +F
Sbjct: 261 SSSNTY-SWKRMIETLEFFHQVGYSEKHMYD-LFKVDPNLLL-EGLGRKLYL--FLGRF 314