Miyakogusa Predicted Gene

Lj1g3v4467940.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4467940.1 Non Characterized Hit- tr|I1KU63|I1KU63_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.43611
PE,56.58,0.000000000000009, ,CUFF.32423.1
         (104 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g064740.1 | U5 small nuclear ribonucleoprotein 200 kDa hel...    82   1e-16
Medtr4g011450.1 | U5 small nuclear ribonucleoprotein 200 kDa hel...    74   4e-14
Medtr4g011450.2 | U5 small nuclear ribonucleoprotein 200 kDa hel...    74   4e-14
Medtr2g064390.1 | U5 small nuclear ribonucleoprotein helicase | ...    61   2e-10

>Medtr2g064740.1 | U5 small nuclear ribonucleoprotein 200 kDa
           helicase | HC | chr2:29260637-29270804 | 20130731
          Length = 2188

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/76 (53%), Positives = 48/76 (63%), Gaps = 7/76 (9%)

Query: 23  LNAEPFGPYEKLVKISSMPDWVQPAFKGMTQLNRVQRKVYDAALFKP-------PPKANP 75
           L A+P  P EKL+KIS+MPDW QPAFKGMTQLNRVQ KVY+ ALFKP       P  A  
Sbjct: 493 LKAKPLDPNEKLLKISAMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLCAPTGAGK 552

Query: 76  PKTQIQNSISSIAKPR 91
               +   +  IA+ R
Sbjct: 553 TNVAVLTILQQIARHR 568


>Medtr4g011450.1 | U5 small nuclear ribonucleoprotein 200 kDa
           helicase | HC | chr4:2793467-2800896 | 20130731
          Length = 2099

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 23  LNAEPFGPYEKLVKISSMPDWVQPAFKGMTQLNRVQRKVYDAALFK-------PPPKANP 75
           L A+P  P EKLV I  MPDW QPAFKGM QLNRVQ KVY+ ALFK        P  A  
Sbjct: 448 LKAKPIDPNEKLVNIGYMPDWAQPAFKGMIQLNRVQSKVYETALFKSDNLLLCAPTGAGK 507

Query: 76  PKTQIQNSISSIAKPR 91
               +   +  IA+ R
Sbjct: 508 TNVAVLTILQEIARHR 523


>Medtr4g011450.2 | U5 small nuclear ribonucleoprotein 200 kDa
           helicase | HC | chr4:2793467-2800740 | 20130731
          Length = 2072

 Score = 73.6 bits (179), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/76 (50%), Positives = 43/76 (56%), Gaps = 7/76 (9%)

Query: 23  LNAEPFGPYEKLVKISSMPDWVQPAFKGMTQLNRVQRKVYDAALFK-------PPPKANP 75
           L A+P  P EKLV I  MPDW QPAFKGM QLNRVQ KVY+ ALFK        P  A  
Sbjct: 448 LKAKPIDPNEKLVNIGYMPDWAQPAFKGMIQLNRVQSKVYETALFKSDNLLLCAPTGAGK 507

Query: 76  PKTQIQNSISSIAKPR 91
               +   +  IA+ R
Sbjct: 508 TNVAVLTILQEIARHR 523


>Medtr2g064390.1 | U5 small nuclear ribonucleoprotein helicase | LC
           | chr2:29190848-29183241 | 20130731
          Length = 1579

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/34 (76%), Positives = 28/34 (82%)

Query: 34  LVKISSMPDWVQPAFKGMTQLNRVQRKVYDAALF 67
           +V IS+MPDW QPAFKGMT LNRVQ KVY  ALF
Sbjct: 97  IVMISTMPDWAQPAFKGMTHLNRVQSKVYKTALF 130