Miyakogusa Predicted Gene
- Lj1g3v4454670.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4454670.1 Non Characterized Hit- tr|I1PGB5|I1PGB5_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,44.76,6e-18,ZF_RING_2,Zinc finger, RING-type; seg,NULL;
RING/U-box,NULL; RING FINGER PROTEIN,NULL; no descriptio,CUFF.32543.1
(428 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g096210.2 | E3 ubiquitin protein ligase DRIP2, putative | ... 582 e-166
Medtr7g096210.1 | E3 ubiquitin protein ligase DRIP2, putative | ... 582 e-166
Medtr7g115240.1 | E3 ubiquitin protein ligase DRIP2, putative | ... 398 e-111
Medtr1g093150.1 | hypothetical protein | LC | chr1:33789663-3378... 125 1e-28
Medtr1g057690.1 | hypothetical protein | LC | chr1:25354425-2535... 104 1e-22
Medtr7g021270.1 | hypothetical protein | HC | chr7:6706427-67050... 64 4e-10
Medtr1g093160.1 | hypothetical protein | HC | chr1:33790576-3378... 60 5e-09
Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protei... 53 6e-07
Medtr2g090595.1 | RING zinc finger protein | HC | chr2:38732918-... 52 1e-06
Medtr2g090595.2 | RING zinc finger protein | HC | chr2:38732994-... 52 1e-06
>Medtr7g096210.2 | E3 ubiquitin protein ligase DRIP2, putative | HC
| chr7:38583482-38588861 | 20130731
Length = 428
Score = 582 bits (1500), Expect = e-166, Method: Compositional matrix adjust.
Identities = 319/433 (73%), Positives = 350/433 (80%), Gaps = 10/433 (2%)
Query: 1 MPNPVVKVRWNTIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDKLSDEELECCPICN 60
M N VVKV+ TIAACMTCPLCN LFK+ TTISECLHTFCRKCIYDK +DE+LECCP+CN
Sbjct: 1 MSNDVVKVKRETIAACMTCPLCNNLFKQPTTISECLHTFCRKCIYDKFTDEDLECCPVCN 60
Query: 61 IDLGCVPLEKLRPDHNLQDMRAKIFPLKGRKAKAPE---VAPSVPLPARRKERSLSSLVV 117
IDLGCVPLEKLRPDH QD+RAKIFPLKGRK KAPE VA S PLPA+RKERSLSSLVV
Sbjct: 61 IDLGCVPLEKLRPDHTKQDVRAKIFPLKGRKVKAPEPEAVAASEPLPAKRKERSLSSLVV 120
Query: 118 ITPRVSAQATMTGRRTKPTRKASGLRSSSFSIEKPIKKE-EVSGDHPESSSSRDTSNKLP 176
TPRVS Q TMTGRRTKPTRKAS LRSSSFSI+K IKKE E+ D PESSSS + SNKL
Sbjct: 121 NTPRVSVQTTMTGRRTKPTRKASSLRSSSFSIDKSIKKEAELLDDCPESSSSPEASNKLR 180
Query: 177 QNTEQSSSPCGGSQSKPNKESENSAEPWDAKLDLWKPLNFLVEVASRSKSFKSN-AQGSD 235
QN QS GSQS PN+ +EN ++ DAK+DLWKPLN LVEVASR+KS KSN QGSD
Sbjct: 181 QNNGQSE----GSQSAPNRVTENDSKTCDAKMDLWKPLNCLVEVASRTKSLKSNNIQGSD 236
Query: 236 AKLEPIPVNESDSQVQXXXXXXXXXXXXXXXXRISPHLVSSDTSKPNKLRRIRKKKEPAL 295
AK EP NES SQVQ ISP VSSDT+KPNKLRR+R+KKEP
Sbjct: 237 AKPEPAQANESGSQVQKIKNKEKKRKAKVEDESISPFPVSSDTAKPNKLRRVRRKKEP-F 295
Query: 296 GESGISPQAVLHSSSNKLLRDGPIWFSLVASENQEGDAPLPQIPSSYVRIKDGSLPVSFI 355
GESGISPQAV+ S+ +KL + GPIWFSLVASENQEGD PLPQIP+SYVRIKDGS+PVSFI
Sbjct: 296 GESGISPQAVVDSTGSKLFKGGPIWFSLVASENQEGDTPLPQIPASYVRIKDGSVPVSFI 355
Query: 356 QKYLMKKLDLSSESEVENKCMGQPVIPTLRLHNLVELWLDSAASSSLRIPATIGSSAKDF 415
QKYLMKKLDL++E+E+E CMGQPV+PTL LHNLVELWLDS AS+S RIPA IGSSAKDF
Sbjct: 356 QKYLMKKLDLTNETEIEIICMGQPVLPTLTLHNLVELWLDSTASTSHRIPAIIGSSAKDF 415
Query: 416 VMVLAYARKVSHP 428
VMVLAYARK P
Sbjct: 416 VMVLAYARKSPRP 428
>Medtr7g096210.1 | E3 ubiquitin protein ligase DRIP2, putative | HC
| chr7:38583482-38588867 | 20130731
Length = 429
Score = 582 bits (1500), Expect = e-166, Method: Compositional matrix adjust.
Identities = 319/433 (73%), Positives = 350/433 (80%), Gaps = 9/433 (2%)
Query: 1 MPNPVVKVRWNTIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDKLSDEELECCPICN 60
M N VVKV+ TIAACMTCPLCN LFK+ TTISECLHTFCRKCIYDK +DE+LECCP+CN
Sbjct: 1 MSNDVVKVKRETIAACMTCPLCNNLFKQPTTISECLHTFCRKCIYDKFTDEDLECCPVCN 60
Query: 61 IDLGCVPLEKLRPDHNLQDMRAKIFPLKGRKAKAPE---VAPSVPLPARRKERSLSSLVV 117
IDLGCVPLEKLRPDH QD+RAKIFPLKGRK KAPE VA S PLPA+RKERSLSSLVV
Sbjct: 61 IDLGCVPLEKLRPDHTKQDVRAKIFPLKGRKVKAPEPEAVAASEPLPAKRKERSLSSLVV 120
Query: 118 ITPRVSAQATMTGRRTKPTRKASGLRSSSFSIEKPIKKE-EVSGDHPESSSSRDTSNKLP 176
TPRVS Q TMTGRRTKPTRKAS LRSSSFSI+K IKKE E+ D PESSSS + SNKL
Sbjct: 121 NTPRVSVQTTMTGRRTKPTRKASSLRSSSFSIDKSIKKEAELLDDCPESSSSPEASNKLR 180
Query: 177 QNTEQSSSPCGGSQSKPNKESENSAEPWDAKLDLWKPLNFLVEVASRSKSFKSN-AQGSD 235
QN Q S GSQS PN+ +EN ++ DAK+DLWKPLN LVEVASR+KS KSN QGSD
Sbjct: 181 QNNGQQSE---GSQSAPNRVTENDSKTCDAKMDLWKPLNCLVEVASRTKSLKSNNIQGSD 237
Query: 236 AKLEPIPVNESDSQVQXXXXXXXXXXXXXXXXRISPHLVSSDTSKPNKLRRIRKKKEPAL 295
AK EP NES SQVQ ISP VSSDT+KPNKLRR+R+KKEP
Sbjct: 238 AKPEPAQANESGSQVQKIKNKEKKRKAKVEDESISPFPVSSDTAKPNKLRRVRRKKEP-F 296
Query: 296 GESGISPQAVLHSSSNKLLRDGPIWFSLVASENQEGDAPLPQIPSSYVRIKDGSLPVSFI 355
GESGISPQAV+ S+ +KL + GPIWFSLVASENQEGD PLPQIP+SYVRIKDGS+PVSFI
Sbjct: 297 GESGISPQAVVDSTGSKLFKGGPIWFSLVASENQEGDTPLPQIPASYVRIKDGSVPVSFI 356
Query: 356 QKYLMKKLDLSSESEVENKCMGQPVIPTLRLHNLVELWLDSAASSSLRIPATIGSSAKDF 415
QKYLMKKLDL++E+E+E CMGQPV+PTL LHNLVELWLDS AS+S RIPA IGSSAKDF
Sbjct: 357 QKYLMKKLDLTNETEIEIICMGQPVLPTLTLHNLVELWLDSTASTSHRIPAIIGSSAKDF 416
Query: 416 VMVLAYARKVSHP 428
VMVLAYARK P
Sbjct: 417 VMVLAYARKSPRP 429
>Medtr7g115240.1 | E3 ubiquitin protein ligase DRIP2, putative | HC
| chr7:47590926-47596695 | 20130731
Length = 428
Score = 398 bits (1023), Expect = e-111, Method: Compositional matrix adjust.
Identities = 221/441 (50%), Positives = 291/441 (65%), Gaps = 37/441 (8%)
Query: 5 VVKVRWNTIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDKLSDEELECCPICNIDLG 64
VVKV+ + ACMTCPLC+KL K+ATTIS CLHTFCRKCI++KLSDEE++ CP+CNIDLG
Sbjct: 2 VVKVKRENLEACMTCPLCHKLLKDATTISLCLHTFCRKCIHEKLSDEEVDSCPVCNIDLG 61
Query: 65 CVPLEKLRPDHNLQDMRAKIFPLKGRKAKAPEVAPSVPLPARRKERSLSSLVVITPRVSA 124
+P+EKLRPDHNLQD+R KIFP K +K KA EV PS PLP +RKERSLSSLVV P+VS
Sbjct: 62 ILPVEKLRPDHNLQDIRTKIFPCKRQKVKAEEVVPSTPLPPKRKERSLSSLVVSAPKVST 121
Query: 125 QATMTGRRTK-PTRKASGLRSSSFSIEKPIKKEEVSGDHPESSSSRDTSNKLPQNTEQSS 183
T TG+RTK TRKA+ LR SF E+ IKKEE + SS +TS K
Sbjct: 122 HTTFTGKRTKTATRKAAALRGCSFIPEETIKKEETHNEDNPDSSIAETSKK--------- 172
Query: 184 SPCGGSQSKPNKESENSAEPWDAKLDLWKPLNFLVEVASRSKSFKSNAQGSD-AKLEP-- 240
++PN++++N+ + + K DLW PLN LVE A+R+KS +SN QG+ KLE
Sbjct: 173 -------NRPNEDTDNNIDLTEGKADLWTPLNCLVEAANRTKSSRSNLQGTPLTKLESPT 225
Query: 241 -----IPVNESDSQVQXXXXXXXXXXXXXXXXRISPHLVSSDTSK--------PNKLRRI 287
+ ++E ++ + + + H K P K +R+
Sbjct: 226 TPHGGLEMSEITTKSEPPTSVQGELHMPKTKNKSNGHKTKFGDDKGGNTMPSGPVKRKRM 285
Query: 288 R--KKKEPALGESGISPQAVLHSSSNKLLR-DGPIWFSLVASENQEGDAPLPQIPSSYVR 344
R K+K A E S Q +L ++ ++ R + PIWF+LVASE+Q G+ LPQI + Y+R
Sbjct: 286 RPSKQKRAAAFEMSASAQLMLDATESRCNRKNNPIWFTLVASEDQNGEVSLPQISACYLR 345
Query: 345 IKDGSLPVSFIQKYLMKKLDLSSESEVENKCMGQPVIPTLRLHNLVELWLDSAASSSLRI 404
IKDG++PVS+IQKYLMKKL+L+SE+EVE C GQ V+PTL+LHNLV+LW AS+S ++
Sbjct: 346 IKDGTVPVSYIQKYLMKKLNLASEAEVEIMCRGQSVLPTLQLHNLVDLWF-CTASTSKKL 404
Query: 405 PATIGSSAKDFVMVLAYARKV 425
PA++GSSAKDFVM L+Y RK
Sbjct: 405 PASVGSSAKDFVMALSYCRKT 425
>Medtr1g093150.1 | hypothetical protein | LC |
chr1:33789663-33787293 | 20130731
Length = 411
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 85/108 (78%), Gaps = 2/108 (1%)
Query: 317 GPIWFSLVASENQEGDAPLPQIPSSYVRIKDGSLPVSFIQKYLMKKLDLSSESEVENKCM 376
PIWFSLVAS+ Q+ A LPQI S Y+ +++GSLPVS I+K+L++KLDL+SE+EVE
Sbjct: 304 NPIWFSLVASKEQDVGA-LPQISSPYIMVRNGSLPVSHIKKHLVQKLDLASEAEVEILLR 362
Query: 377 GQPVIPTLRLHNLVELWLDSAASSSLRIPATIGSSAKDFVMVLAYARK 424
G+PV+ +++L NLVE+WL++ + RI ++GSSAKDFVMVL+Y RK
Sbjct: 363 GKPVLCSMQLQNLVEMWLETMPKNE-RIQTSVGSSAKDFVMVLSYGRK 409
>Medtr1g057690.1 | hypothetical protein | LC |
chr1:25354425-25355604 | 20130731
Length = 154
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 63/92 (68%), Gaps = 1/92 (1%)
Query: 9 RWNTIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDKLSDEELECCPICNIDLGCVPL 68
R IA C++C LC +L +AT I C HTFC+KCIY KLSDE L+CCP+C++ LG P
Sbjct: 10 RSREIAKCLSCELCKQLLTDATKIIICFHTFCKKCIYTKLSDEILDCCPVCDVHLGIDPF 69
Query: 69 EKLRPDHNLQDMRAKIFPLKGRKAKAPEVAPS 100
KLR D NLQD R ++FP+ G++ ++ + P
Sbjct: 70 SKLRSDFNLQDTRNRLFPI-GKEEESLKYLPG 100
>Medtr7g021270.1 | hypothetical protein | HC | chr7:6706427-6705001
| 20130731
Length = 366
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%)
Query: 319 IWFSLVASENQEGDAPLPQIPSSYVRIKDGSLPVSFIQKYLMKKLDLSSESEV 371
IWF L AS+NQ + LPQIP +Y+RIKDG + V + KYL+ KL L SESEV
Sbjct: 309 IWFMLQASQNQLKEPFLPQIPKNYLRIKDGRMTVRLLFKYLVSKLKLESESEV 361
>Medtr1g093160.1 | hypothetical protein | HC |
chr1:33790576-33789951 | 20130731
Length = 116
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 43/103 (41%)
Query: 13 IAACMTCPLCNKLFKEATTISECLHT---------------------------------- 38
+ A +TCPLC+ +F+E TTI ECLHT
Sbjct: 11 LTAPLTCPLCSNIFREPTTIPECLHTCKSFLFSSSFSPLFNYAMMNIMPCFHLCLLCDEY 70
Query: 39 ---------FCRKCIYDKLSDEELECCPICNIDLGCVPLEKLR 72
CR+CI K DE L CP+C +DLG PL+KL+
Sbjct: 71 MPKSLSLVTVCRECIERKFIDERLNHCPVCKVDLGYYPLDKLK 113
>Medtr4g088520.1 | E3 ubiquitin-protein ligase RING1a-like protein,
putative | HC | chr4:35141489-35136880 | 20130731
Length = 440
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 5 VVKVRWNTIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDK---LSDEELECCPICNI 61
V ++ + + + CP+C + ++ T+ ECLH FCR+CI DK L + E CP C
Sbjct: 58 YVAIKLSDVRKEVQCPICLGIIRKTRTVMECLHRFCRECI-DKSMRLGNNE---CPACRT 113
Query: 62 DLGCVPLEKLRPDHNLQDMRAKIFPLKGRKAKAPEVAPSVPLPARRKERSLSSLVVITPR 121
C LR D N + A I+P K + E+A R K+ + + T +
Sbjct: 114 H--CASRRSLRDDPNYDALIAAIYP-DIDKYEEEELALHEDEMTRHKQ--FQASIAQTLQ 168
Query: 122 VSAQATMTGRRTKPT-----RKASG-LRSSSFSIEKPIKKEEVSGDHPESSSSRDTSNKL 175
++A R K T R++ G R+S + I+ +GD SS + ++
Sbjct: 169 RQSEALSKKRNAKATAAAFMRRSKGNYRTSHLRRRRNIRN---AGDFQVSSDNNGMNDN- 224
Query: 176 PQNTEQSSSPCGGSQSKPNK 195
+ SSS G ++++P +
Sbjct: 225 -DGEKDSSSDDGQTETQPRR 243
>Medtr2g090595.1 | RING zinc finger protein | HC |
chr2:38732918-38738851 | 20130731
Length = 504
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 6 VKVRWNTIAACMTCPLCNKLFKEATTISECLHTFCRKCIYD--KLSDEELECCPICNIDL 63
V V + I + CP+C + K+ T+ ECLH FCR+CI +L + E CP C
Sbjct: 112 VYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNE---CPACRT-- 166
Query: 64 GCVPLEKLRPDHNLQDMRAKIFP 86
C LR D N + A ++P
Sbjct: 167 HCASRRSLRDDPNYDALIATLYP 189
>Medtr2g090595.2 | RING zinc finger protein | HC |
chr2:38732994-38739213 | 20130731
Length = 433
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 21/142 (14%)
Query: 5 VVKVRWNTIAACMTCPLCNKLFKEATTISECLHTFCRKCIYDK---LSDEELECCPICNI 61
V V + I + CP+C + K+ T+ ECLH FCR+CI DK L + E CP C
Sbjct: 111 YVYVELSDIRKDVQCPICLGIIKKTRTVMECLHRFCRECI-DKSMRLGNNE---CPACRT 166
Query: 62 DLGCVPLEKLRPDHNLQDMRAKIFP------------LKGRKAKAPEVAPSVPLPARRKE 109
C LR D N + A ++P + K + ++ S+ +R+
Sbjct: 167 H--CASRRSLRDDPNYDALIATLYPNIEKYEEEELEFREEEKNRNKQIQASIAKVFKRQS 224
Query: 110 RSLSSLVVITPRVSAQATMTGR 131
+LS TP S+ T + R
Sbjct: 225 EALSKKRKDTPSSSSFVTRSQR 246