Miyakogusa Predicted Gene
- Lj1g3v4435480.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4435480.1 gene.g36475.t1.1
(270 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr7g095030.1 | F-box protein SKIP2 | HC | chr7:37984180-37989... 266 1e-71
Medtr7g095030.2 | F-box protein SKIP2 | HC | chr7:37984180-37989... 266 2e-71
Medtr7g095030.3 | F-box protein SKIP2 | HC | chr7:37984180-37989... 266 2e-71
Medtr4g095000.1 | F-box protein, putative | HC | chr4:39476733-3... 133 2e-31
Medtr7g094400.1 | hypothetical protein | LC | chr7:37580210-3757... 59 5e-09
>Medtr7g095030.1 | F-box protein SKIP2 | HC | chr7:37984180-37989655
| 20130731
Length = 510
Score = 266 bits (680), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 160/295 (54%), Positives = 173/295 (58%), Gaps = 68/295 (23%)
Query: 1 MAKRQCPSENPRPEQVENLLNAFXXXXXXXXXXXXXXFENLLQSKPPPHDSPDLIDRALK 60
MAKR CP++NPR E VE++L F ENLLQS P DLIDRALK
Sbjct: 21 MAKRPCPAQNPRME-VEHVLEEFLSLSDCPSLSIDLSLENLLQSMPA---DTDLIDRALK 76
Query: 61 MGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVTYIQSPNFIQLKIQCNHEMVVILCG 120
MGSLLL AA HSSRKRA +HNS+ WPL DLT K+
Sbjct: 77 MGSLLLDAAKHSSRKRAYNHNSIVWPLPPDLTFKI------------------------- 111
Query: 121 MFDFLIRRSLNQVFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTTPVPKVNNAVVA 180
FSMLDTQSLC+ DP+CY NLDL T VPKVNNAVVA
Sbjct: 112 -------------FSMLDTQSLCFVSAACSFFSKCAKDPLCYENLDLRTLVPKVNNAVVA 158
Query: 181 TMIQRAGKALRN-------------------------AIVDVSNISWIDKRSRQGRDPSS 215
TMIQRAGKALR+ AIV+ N SW DKRSRQGR+ SS
Sbjct: 159 TMIQRAGKALRSIKLGVVPVTACPLGFCQPSVSTVRKAIVEAPNYSWNDKRSRQGRE-SS 217
Query: 216 ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGL 270
ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDN SL AL ACPSLLDLEIVG+
Sbjct: 218 ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDNTSLCCALSACPSLLDLEIVGI 272
>Medtr7g095030.2 | F-box protein SKIP2 | HC | chr7:37984180-37989463
| 20130731
Length = 457
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/295 (54%), Positives = 173/295 (58%), Gaps = 68/295 (23%)
Query: 1 MAKRQCPSENPRPEQVENLLNAFXXXXXXXXXXXXXXFENLLQSKPPPHDSPDLIDRALK 60
MAKR CP++NPR E VE++L F ENLLQS P DLIDRALK
Sbjct: 21 MAKRPCPAQNPRME-VEHVLEEFLSLSDCPSLSIDLSLENLLQSMPA---DTDLIDRALK 76
Query: 61 MGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVTYIQSPNFIQLKIQCNHEMVVILCG 120
MGSLLL AA HSSRKRA +HNS+ WPL DLT K+
Sbjct: 77 MGSLLLDAAKHSSRKRAYNHNSIVWPLPPDLTFKI------------------------- 111
Query: 121 MFDFLIRRSLNQVFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTTPVPKVNNAVVA 180
FSMLDTQSLC+ DP+CY NLDL T VPKVNNAVVA
Sbjct: 112 -------------FSMLDTQSLCFVSAACSFFSKCAKDPLCYENLDLRTLVPKVNNAVVA 158
Query: 181 TMIQRAGKALRN-------------------------AIVDVSNISWIDKRSRQGRDPSS 215
TMIQRAGKALR+ AIV+ N SW DKRSRQGR+ SS
Sbjct: 159 TMIQRAGKALRSIKLGVVPVTACPLGFCQPSVSTVRKAIVEAPNYSWNDKRSRQGRE-SS 217
Query: 216 ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGL 270
ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDN SL AL ACPSLLDLEIVG+
Sbjct: 218 ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDNTSLCCALSACPSLLDLEIVGI 272
>Medtr7g095030.3 | F-box protein SKIP2 | HC | chr7:37984180-37989463
| 20130731
Length = 457
Score = 266 bits (679), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/295 (54%), Positives = 173/295 (58%), Gaps = 68/295 (23%)
Query: 1 MAKRQCPSENPRPEQVENLLNAFXXXXXXXXXXXXXXFENLLQSKPPPHDSPDLIDRALK 60
MAKR CP++NPR E VE++L F ENLLQS P DLIDRALK
Sbjct: 21 MAKRPCPAQNPRME-VEHVLEEFLSLSDCPSLSIDLSLENLLQSMPA---DTDLIDRALK 76
Query: 61 MGSLLLHAANHSSRKRASHHNSLSWPLSHDLTIKVTYIQSPNFIQLKIQCNHEMVVILCG 120
MGSLLL AA HSSRKRA +HNS+ WPL DLT K+
Sbjct: 77 MGSLLLDAAKHSSRKRAYNHNSIVWPLPPDLTFKI------------------------- 111
Query: 121 MFDFLIRRSLNQVFSMLDTQSLCYXXXXXXXXXXXXXDPMCYANLDLTTPVPKVNNAVVA 180
FSMLDTQSLC+ DP+CY NLDL T VPKVNNAVVA
Sbjct: 112 -------------FSMLDTQSLCFVSAACSFFSKCAKDPLCYENLDLRTLVPKVNNAVVA 158
Query: 181 TMIQRAGKALRN-------------------------AIVDVSNISWIDKRSRQGRDPSS 215
TMIQRAGKALR+ AIV+ N SW DKRSRQGR+ SS
Sbjct: 159 TMIQRAGKALRSIKLGVVPVTACPLGFCQPSVSTVRKAIVEAPNYSWNDKRSRQGRE-SS 217
Query: 216 ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDNASLGGALLACPSLLDLEIVGL 270
ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDN SL AL ACPSLLDLEIVG+
Sbjct: 218 ILTRCCLSPLSGDGGAPGALLRKLHLYNIERMDNTSLCCALSACPSLLDLEIVGI 272
>Medtr4g095000.1 | F-box protein, putative | HC |
chr4:39476733-39472979 | 20130731
Length = 429
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 73/87 (83%), Gaps = 1/87 (1%)
Query: 184 QRAGKALRNAIVDVSNISWIDKRSRQGRDPSSILTRCCLSPLSGDGGAPGALLRKLHLYN 243
Q + +R AIV+ N SW DKRSRQGR+ SSILTRCCLSPLSGDGGAPGALLRKLHLYN
Sbjct: 95 QPSVSTVRKAIVEAPNYSWNDKRSRQGRE-SSILTRCCLSPLSGDGGAPGALLRKLHLYN 153
Query: 244 IERMDNASLGGALLACPSLLDLEIVGL 270
IERMDN SL AL ACPSLLDLEIVG+
Sbjct: 154 IERMDNTSLCCALSACPSLLDLEIVGI 180
>Medtr7g094400.1 | hypothetical protein | LC |
chr7:37580210-37578283 | 20130731
Length = 116
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 33/41 (80%)
Query: 159 PMCYANLDLTTPVPKVNNAVVATMIQRAGKALRNAIVDVSN 199
P+CY NL L T +P+VNNAVVATMIQR GKALR I+D ++
Sbjct: 38 PLCYENLHLRTLLPRVNNAVVATMIQRVGKALRYEILDCTD 78