Miyakogusa Predicted Gene
- Lj1g3v4432100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4432100.1 tr|Q2LMD6|Q2LMD6_MALDO MYBR5 OS=Malus domestica
PE=2 SV=1,70.13,3e-19,SWI/SNF COMPLEX-RELATED,NULL,CUFF.32339.1
(68 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr0123s0070.1 | myb transcription factor | HC | scaffold0123:... 127 3e-30
Medtr0123s0070.2 | myb transcription factor | HC | scaffold0123:... 127 3e-30
Medtr8g028655.1 | myb transcription factor | HC | chr8:10999892-... 85 2e-17
Medtr1g067000.2 | myb transcription factor | HC | chr1:28822118-... 62 1e-10
Medtr1g067000.1 | myb transcription factor | HC | chr1:28822118-... 62 1e-10
Medtr7g118330.2 | late elongated hypocotyl-like protein | HC | c... 59 1e-09
Medtr7g118330.1 | late elongated hypocotyl-like protein | HC | c... 59 1e-09
Medtr6g477860.1 | myb transcription factor | HC | chr6:28638569-... 55 2e-08
Medtr5g076960.1 | myb transcription factor | HC | chr5:32831868-... 55 2e-08
Medtr3g064500.1 | myb transcription factor | HC | chr3:29064791-... 55 2e-08
>Medtr0123s0070.1 | myb transcription factor | HC |
scaffold0123:45193-37242 | 20130731
Length = 307
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 65/68 (95%), Gaps = 1/68 (1%)
Query: 1 MVSKNPNPPEGFCLDPSTMALPGLSPFASVSSAAEDAAKKIRKPYTITKSRENWTEPEHD 60
MVSKNPNPPEGFCLDP++MALPG PFA+V+S+ EDA+KKIRKPYTITKSRENWTEPEHD
Sbjct: 1 MVSKNPNPPEGFCLDPTSMALPGFGPFAAVNSS-EDASKKIRKPYTITKSRENWTEPEHD 59
Query: 61 KFLEALQL 68
KFLEALQL
Sbjct: 60 KFLEALQL 67
>Medtr0123s0070.2 | myb transcription factor | HC |
scaffold0123:45193-37193 | 20130731
Length = 286
Score = 127 bits (318), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 59/68 (86%), Positives = 65/68 (95%), Gaps = 1/68 (1%)
Query: 1 MVSKNPNPPEGFCLDPSTMALPGLSPFASVSSAAEDAAKKIRKPYTITKSRENWTEPEHD 60
MVSKNPNPPEGFCLDP++MALPG PFA+V+S+ EDA+KKIRKPYTITKSRENWTEPEHD
Sbjct: 1 MVSKNPNPPEGFCLDPTSMALPGFGPFAAVNSS-EDASKKIRKPYTITKSRENWTEPEHD 59
Query: 61 KFLEALQL 68
KFLEALQL
Sbjct: 60 KFLEALQL 67
>Medtr8g028655.1 | myb transcription factor | HC |
chr8:10999892-11006608 | 20130731
Length = 333
Score = 84.7 bits (208), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 53/81 (65%), Gaps = 13/81 (16%)
Query: 1 MVSKNPNP-PEGFCL-DPSTMALPGLSPFASVSSAA-----------EDAAKKIRKPYTI 47
MVS NPNP P+GF DPSTMALPG++ ED KKIRKPYTI
Sbjct: 1 MVSINPNPTPQGFYFFDPSTMALPGVNNLPPPPPPPSTTAAAASTVPEDPNKKIRKPYTI 60
Query: 48 TKSRENWTEPEHDKFLEALQL 68
TKSRE+WT+ EHDKFLEALQL
Sbjct: 61 TKSRESWTDQEHDKFLEALQL 81
>Medtr1g067000.2 | myb transcription factor | HC |
chr1:28822118-28815959 | 20130731
Length = 298
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
S + + KK+RKPYTITKSRE+W++ EHDKFLEALQL
Sbjct: 28 SGGDASGKKVRKPYTITKSRESWSDEEHDKFLEALQL 64
>Medtr1g067000.1 | myb transcription factor | HC |
chr1:28822118-28815959 | 20130731
Length = 298
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
S + + KK+RKPYTITKSRE+W++ EHDKFLEALQL
Sbjct: 28 SGGDASGKKVRKPYTITKSRESWSDEEHDKFLEALQL 64
>Medtr7g118330.2 | late elongated hypocotyl-like protein | HC |
chr7:49115628-49123834 | 20130731
Length = 754
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 28 ASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
A+ S+ ED K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 3 AAAYSSGEDVVLKTRKPYTITKQRERWTEDEHNRFLEALKL 43
>Medtr7g118330.1 | late elongated hypocotyl-like protein | HC |
chr7:49115628-49123834 | 20130731
Length = 754
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 31/41 (75%)
Query: 28 ASVSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
A+ S+ ED K RKPYTITK RE WTE EH++FLEAL+L
Sbjct: 3 AAAYSSGEDVVLKTRKPYTITKQRERWTEDEHNRFLEALKL 43
>Medtr6g477860.1 | myb transcription factor | HC |
chr6:28638569-28642957 | 20130731
Length = 467
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 29/39 (74%)
Query: 30 VSSAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
+ S + A K+RKPYTITK RE WT+ EH KFLEAL+L
Sbjct: 36 IPSVGNNLAPKVRKPYTITKQREKWTDEEHQKFLEALKL 74
>Medtr5g076960.1 | myb transcription factor | HC |
chr5:32831868-32828390 | 20130731
Length = 420
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 27/37 (72%)
Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
S D A K RKPYTITK RE WT+ EH KFLEAL+L
Sbjct: 24 SCGNDHALKARKPYTITKQREKWTDEEHKKFLEALKL 60
>Medtr3g064500.1 | myb transcription factor | HC |
chr3:29064791-29066449 | 20130731
Length = 353
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/37 (67%), Positives = 28/37 (75%)
Query: 32 SAAEDAAKKIRKPYTITKSRENWTEPEHDKFLEALQL 68
S A D A K RKPYTI+K RE WT+ EH KFLEAL+L
Sbjct: 38 SCANDYALKARKPYTISKQRERWTDEEHKKFLEALKL 74