Miyakogusa Predicted Gene
- Lj1g3v4407610.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v4407610.1 tr|B7FL19|B7FL19_MEDTR Exosome complex
exonuclease RRP4 OS=Medicago truncatula GN=MTR_4g121550 PE=2
,86.54,0,coiled-coil,NULL; RRP4,NULL; PNAS-3 RELATED,Exosome complex
RNA-binding protein 1/RRP40/RRP4; seg,NU,CUFF.32320.1
(327 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g121550.1 | ribosomal RNA processing protein | HC | chr4:5... 556 e-159
Medtr2g093790.1 | ribosomal RNA processing protein | HC | chr2:4... 373 e-103
>Medtr4g121550.1 | ribosomal RNA processing protein | HC |
chr4:50237475-50242384 | 20130731
Length = 327
Score = 556 bits (1433), Expect = e-159, Method: Compositional matrix adjust.
Identities = 265/313 (84%), Positives = 286/313 (91%)
Query: 1 MRGIQLTLSQTQKIRLQKALEQLESLSSKVNSDASVTIADSIPVNHEDGVLKGHGTGDLN 60
MRGI L LSQTQK+RLQKALE LESLSSKVNSD+SVTIADSIPVNHEDGVLKGHGT DL+
Sbjct: 1 MRGIHLQLSQTQKLRLQKALEHLESLSSKVNSDSSVTIADSIPVNHEDGVLKGHGTADLD 60
Query: 61 GEVVATVCGVVERVNKLVYVRSLRSRYKPEVGDIIIGRVIEVAQKRWRLEINYSQDAFLM 120
GEVVAT+CGVVERVNKLVYVR+LRSRYKPEVGDI+IGRVIEVAQKRWRL+INYSQ+A+LM
Sbjct: 61 GEVVATLCGVVERVNKLVYVRALRSRYKPEVGDIVIGRVIEVAQKRWRLDINYSQNAYLM 120
Query: 121 LSSMNMPDGVQRRRTSVDELNMRCIFEEKDVVCAEVRGFQHDGLHLQARSKKYGKLNSGQ 180
LS+MNMPDGVQRRRT++DELNMRCIFEE DV+CAEVRGFQHDGLHLQARS+KYGKL++GQ
Sbjct: 121 LSAMNMPDGVQRRRTALDELNMRCIFEEADVICAEVRGFQHDGLHLQARSQKYGKLSTGQ 180
Query: 181 LLTVPPYLVKRQKLHFHHLEQYGVDLILGCNGFIWVGEHVEARDEMVEDQVNQSDPQVPS 240
LLTV PYLVKRQK HFHHLEQYG+DLI+GCNGFIWVGEHVE RD+MVEDQVNQSDPQV +
Sbjct: 181 LLTVTPYLVKRQKQHFHHLEQYGIDLIIGCNGFIWVGEHVEVRDDMVEDQVNQSDPQVLT 240
Query: 241 PNKNSRDLEEQEKNYTALETRKYICRAANAVRVLSTLGFVITVEIIKGXXXXXXXXXXXX 300
PNKNS LEEQEK YTALETRKYICRAANAVR LSTLGF+IT EIIKG
Sbjct: 241 PNKNSVSLEEQEKKYTALETRKYICRAANAVRGLSTLGFIITSEIIKGVIDLSLSANLDI 300
Query: 301 HDMLGSEFGVLVA 313
HDMLGSEF VLVA
Sbjct: 301 HDMLGSEFCVLVA 313
>Medtr2g093790.1 | ribosomal RNA processing protein | HC |
chr2:40007188-40004405 | 20130731
Length = 276
Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/313 (61%), Positives = 225/313 (71%), Gaps = 50/313 (15%)
Query: 1 MRGIQLTLSQTQKIRLQKALEQLESLSSKVNSDASVTIADSIPVNHEDGVLKGHGTGDLN 60
MRG QL SQ QK+RLQKAL++LESLSS D+SV +
Sbjct: 1 MRGNQLQFSQFQKLRLQKALDKLESLSS----DSSVLWS--------------------- 35
Query: 61 GEVVATVCGVVERVNKLVYVRSLRSRYKPEVGDIIIGRVIEVAQKRWRLEINYSQDAFLM 120
V T + V+VRSL SRYKP+ GDI+IGRVIEV Q RWRL+IN Q+A++M
Sbjct: 36 ---VLT--------STYVFVRSLLSRYKPKAGDIVIGRVIEVGQNRWRLDINCGQNAYMM 84
Query: 121 LSSMNMPDGVQRRRTSVDELNMRCIFEEKDVVCAEVRGFQHDGLHLQARSKKYGKLNSGQ 180
LS+MNMPDG+QRRRT++DELNMRCIFEE+DV+C VR FQHDGL+LQARS+KYGKL+SGQ
Sbjct: 85 LSAMNMPDGLQRRRTALDELNMRCIFEEEDVICVIVRDFQHDGLYLQARSQKYGKLSSGQ 144
Query: 181 LLTVPPYLVKRQKLHFHHLEQYGVDLILGCNGFIWVGEHVEARDEMVEDQVNQSDPQVPS 240
LLTV PYLVKRQ HFHHLE YG+DLILGCNGFIWVGEHVEARD+M+EDQ+NQSDPQV
Sbjct: 145 LLTVAPYLVKRQNQHFHHLEHYGIDLILGCNGFIWVGEHVEARDDMIEDQINQSDPQVLI 204
Query: 241 PNKNSRDLEEQEKNYTALETRKYICRAANAVRVLSTLGFVITVEIIKGXXXXXXXXXXXX 300
PN KNYT+ +YICRAA+AVR LSTLGF++T+EIIKG
Sbjct: 205 PN----------KNYTS----EYICRAADAVRALSTLGFILTLEIIKGVIDLSLSTNLDI 250
Query: 301 HDMLGSEFGVLVA 313
HDMLGSEF VLVA
Sbjct: 251 HDMLGSEFCVLVA 263