Miyakogusa Predicted Gene

Lj1g3v4372230.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v4372230.1 tr|B9HLW3|B9HLW3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_565231 PE=4
SV=1,50,0.00004,seg,NULL; ZINC_FINGER_C2H2_1,Zinc finger, C2H2;
ZINC_FINGER_C2H2_2,Zinc finger, C2H2,gene.g36400.t1.1
         (214 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g008320.1 | zinc finger-like protein | HC | chr5:1744167-1...    52   5e-07
Medtr2g067740.1 | C2H2-type zinc finger protein | LC | chr2:2835...    51   9e-07
Medtr5g008280.1 | zinc finger-like protein | LC | chr5:1724313-1...    51   1e-06

>Medtr5g008320.1 | zinc finger-like protein | HC |
           chr5:1744167-1745171 | 20130731
          Length = 334

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 34/46 (73%), Gaps = 1/46 (2%)

Query: 37  SHGYGCLYCSKRFSSVQAVGGHQNAHRTER-VESEMRQLIMMNMRE 81
           S  + CL+C  +FS+ QA+GGHQNAH+TER ++ +++Q  ++ + +
Sbjct: 71  SRSFSCLFCKGKFSTSQALGGHQNAHKTERALQKQLKQKYVLGLEQ 116


>Medtr2g067740.1 | C2H2-type zinc finger protein | LC |
          chr2:28357489-28358133 | 20130731
          Length = 214

 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 28/38 (73%)

Query: 40 YGCLYCSKRFSSVQAVGGHQNAHRTERVESEMRQLIMM 77
          Y C +C+K+F S QA+GGHQNAHR ERV S + + I +
Sbjct: 61 YPCKFCNKKFPSSQALGGHQNAHRRERVLSRIEKEIQL 98


>Medtr5g008280.1 | zinc finger-like protein | LC |
          chr5:1724313-1725476 | 20130731
          Length = 387

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 40 YGCLYCSKRFSSVQAVGGHQNAHRTERVESEMRQL 74
          + CL+C ++FS+ QA+GGHQNAH+ ER   + R+L
Sbjct: 48 FSCLFCKRKFSTSQALGGHQNAHKAERALKKQRKL 82